RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 XPCQ01831 940 aaPredicted RBP14.38□□□□□ -0.11
UBR4-216ENST00000494503 USP21Q9UK80 565 aa14.37□□□□□ -0.11
UBR4-216ENST00000494503 SOS2Q07890 1332 aaPredicted RBP14.36□□□□□ -0.11
UBR4-216ENST00000494503 ADGRF5Q8IZF2 1346 aa14.36□□□□□ -0.11
UBR4-216ENST00000494503 NPHP3Q7Z494 1330 aa14.35□□□□□ -0.11
UBR4-216ENST00000494503 CDC42BPGQ6DT37 1551 aa14.34□□□□□ -0.11
UBR4-216ENST00000494503 LAMC1P11047 1609 aa14.34□□□□□ -0.11
UBR4-216ENST00000494503 FOXO3O43524 673 aa14.34□□□□□ -0.11
UBR4-216ENST00000494503 PLEKHG5O94827 1062 aa14.34□□□□□ -0.11
UBR4-216ENST00000494503 WAPLQ7Z5K2 1190 aa14.34□□□□□ -0.11
UBR4-216ENST00000494503 TMEM132EQ6IEE7 984 aa14.33□□□□□ -0.12
UBR4-216ENST00000494503 TRPC5Q9UL62 973 aaPredicted RBP14.33□□□□□ -0.12
UBR4-216ENST00000494503 HAP1P54257 671 aaPredicted RBP14.32□□□□□ -0.12
UBR4-216ENST00000494503 ATAD2Q6PL18 1390 aa14.32□□□□□ -0.12
UBR4-216ENST00000494503 IFT172Q9UG01 1749 aa14.32□□□□□ -0.12
UBR4-216ENST00000494503 COL22A1Q8NFW1 1626 aaPredicted RBP14.31□□□□□ -0.12
UBR4-216ENST00000494503 MPHOSPH9Q99550 1183 aa14.31□□□□□ -0.12
UBR4-216ENST00000494503 LRPPRCP42704 1394 aaKnown RBP14.31□□□□□ -0.12
UBR4-216ENST00000494503 ANKRD30BQ9BXX2 1392 aa14.31□□□□□ -0.12
UBR4-216ENST00000494503 PRAG1Q86YV5 1406 aa14.31□□□□□ -0.12
UBR4-216ENST00000494503 MARF1Q9Y4F3 1742 aaKnown RBP14.3□□□□□ -0.12
UBR4-216ENST00000494503 KNDC1Q76NI1 1749 aa14.29□□□□□ -0.12
UBR4-216ENST00000494503 PLEKHH1Q9ULM0 1364 aa14.29□□□□□ -0.12
UBR4-216ENST00000494503 PXDNQ92626 1479 aa14.29□□□□□ -0.12
UBR4-216ENST00000494503 SAFB2Q14151 953 aaKnown RBP eCLIP14.28□□□□□ -0.12
UBR4-216ENST00000494503 LMOD2Q6P5Q4 547 aa14.28□□□□□ -0.12
UBR4-216ENST00000494503 FMN2Q9NZ56 1722 aa14.27□□□□□ -0.12
UBR4-216ENST00000494503 MYOM2P54296 1465 aa14.27□□□□□ -0.12
UBR4-216ENST00000494503 SPATA31E1Q6ZUB1 1445 aa14.27□□□□□ -0.12
UBR4-216ENST00000494503 RGPD8O14715 1765 aaPredicted RBP14.27□□□□□ -0.13
UBR4-216ENST00000494503 KIF1AQ12756 1690 aa14.26□□□□□ -0.13
UBR4-216ENST00000494503 PIK3C2GO75747 1445 aa14.26□□□□□ -0.13
UBR4-216ENST00000494503 ATRNO75882 1429 aa14.26□□□□□ -0.13
UBR4-216ENST00000494503 YTHDC2Q9H6S0 1430 aaKnown RBP14.26□□□□□ -0.13
UBR4-216ENST00000494503 FNBP4Q8N3X1 1017 aaPredicted RBP14.26□□□□□ -0.13
UBR4-216ENST00000494503 TECPR2O15040 1411 aa14.25□□□□□ -0.13
UBR4-216ENST00000494503 ABCC11Q96J66 1382 aa14.24□□□□□ -0.13
UBR4-216ENST00000494503 CCDC9Q9Y3X0 531 aaKnown RBP14.24□□□□□ -0.13
UBR4-216ENST00000494503 KRT28Q7Z3Y7 464 aa14.23□□□□□ -0.13
UBR4-216ENST00000494503 POGKQ9P215 609 aa14.23□□□□□ -0.13
UBR4-216ENST00000494503 DHX57Q6P158 1386 aaKnown RBP14.22□□□□□ -0.13
UBR4-216ENST00000494503 CFAP70Q5T0N1 1121 aa14.22□□□□□ -0.13
UBR4-216ENST00000494503 GJD4Q96KN9 370 aaPredicted RBP14.22□□□□□ -0.13
UBR4-216ENST00000494503 BCL9LQ86UU0 1499 aa14.22□□□□□ -0.13
UBR4-216ENST00000494503 SPATA31A3Q5VYP0 1347 aa14.21□□□□□ -0.13
UBR4-216ENST00000494503 A0A0G2JS52 829 aa14.21□□□□□ -0.13
UBR4-216ENST00000494503 MYT1Q01538 1121 aa14.21□□□□□ -0.13
UBR4-216ENST00000494503 PSME1Q06323 249 aa14.21□□□□□ -0.13
UBR4-216ENST00000494503 CABLES1Q8TDN4 633 aa14.21□□□□□ -0.13
UBR4-216ENST00000494503 PRAM1Q96QH2 718 aa14.21□□□□□ -0.13
UBR4-216ENST00000494503 PHF8Q9UPP1 1060 aa14.21□□□□□ -0.13
UBR4-216ENST00000494503 USP32Q8NFA0 1604 aa14.21□□□□□ -0.13
UBR4-216ENST00000494503 EP400Q96L91 3159 aa14.21□□□□□ -0.14
UBR4-216ENST00000494503 UNC5CLQ8IV45 518 aa14.2□□□□□ -0.14
UBR4-216ENST00000494503 ZRANB1Q9UGI0 708 aa14.2□□□□□ -0.14
UBR4-216ENST00000494503 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.2□□□□□ -0.14
UBR4-216ENST00000494503 TNS3Q68CZ2 1445 aa14.19□□□□□ -0.14
UBR4-216ENST00000494503 PMFBP1Q8TBY8 1022 aa14.19□□□□□ -0.14
UBR4-216ENST00000494503 C14orf93Q9H972 538 aaKnown RBP14.19□□□□□ -0.14
UBR4-216ENST00000494503 RALGAPBQ86X10 1494 aa14.18□□□□□ -0.14
UBR4-216ENST00000494503 PLCH1Q4KWH8 1693 aa14.18□□□□□ -0.14
UBR4-216ENST00000494503 HIRIP3Q9BW71 556 aaPredicted RBP14.18□□□□□ -0.14
UBR4-216ENST00000494503 KDM2AQ9Y2K7 1162 aa14.18□□□□□ -0.14
UBR4-216ENST00000494503 BRWD3Q6RI45 1802 aa14.18□□□□□ -0.14
UBR4-216ENST00000494503 SF3B2Q13435 895 aaKnown RBP14.17□□□□□ -0.14
UBR4-216ENST00000494503 ACIN1Q9UKV3 1341 aaKnown RBP14.16□□□□□ -0.14
UBR4-216ENST00000494503 TRAK1Q9UPV9 953 aa14.16□□□□□ -0.14
UBR4-216ENST00000494503 RAB3GAP2Q9H2M9 1393 aa14.16□□□□□ -0.14
UBR4-216ENST00000494503 GLI3P10071 1580 aa14.16□□□□□ -0.14
UBR4-216ENST00000494503 SRCAPQ6ZRS2 3230 aa14.16□□□□□ -0.14
UBR4-216ENST00000494503 MINK1Q8N4C8 1332 aaPredicted RBP14.15□□□□□ -0.14
UBR4-216ENST00000494503 SLIT2O94813 1529 aa14.15□□□□□ -0.14
UBR4-216ENST00000494503 ABCA3Q99758 1704 aa14.15□□□□□ -0.14
UBR4-216ENST00000494503 ARHGEF10O15013 1369 aa14.15□□□□□ -0.14
UBR4-216ENST00000494503 CCDC125Q86Z20 511 aa14.15□□□□□ -0.14
UBR4-216ENST00000494503 NRXN1Q9ULB1 1477 aa14.14□□□□□ -0.15
UBR4-216ENST00000494503 SIRT1Q96EB6 747 aa14.14□□□□□ -0.15
UBR4-216ENST00000494503 NWD2Q9ULI1 1742 aa14.13□□□□□ -0.15
UBR4-216ENST00000494503 PAK3O75914 559 aaPredicted RBP14.13□□□□□ -0.15
UBR4-216ENST00000494503 SEPT12Q8IYM1 358 aa14.13□□□□□ -0.15
UBR4-216ENST00000494503 DCAF11Q8TEB1 546 aa14.13□□□□□ -0.15
UBR4-216ENST00000494503 GPRASP1Q5JY77 1395 aa14.12□□□□□ -0.15
UBR4-216ENST00000494503 SBNO1A3KN83 1393 aa14.11□□□□□ -0.15
UBR4-216ENST00000494503 DLC1Q96QB1 1528 aa14.11□□□□□ -0.15
UBR4-216ENST00000494503 BLMP54132 1417 aaPredicted RBP14.11□□□□□ -0.15
UBR4-216ENST00000494503 VPS72Q15906 364 aa14.11□□□□□ -0.15
UBR4-216ENST00000494503 ANKARQ7Z5J8 1434 aa14.11□□□□□ -0.15
UBR4-216ENST00000494503 DEFB132Q7Z7B7 95 aa14.11□□□□□ -0.15
UBR4-216ENST00000494503 NGDNQ8NEJ9 315 aaKnown RBP14.11□□□□□ -0.15
UBR4-216ENST00000494503 EIF3AQ14152 1382 aaKnown RBP14.1□□□□□ -0.15
UBR4-216ENST00000494503 ADGRB2O60241 1585 aa14.09□□□□□ -0.15
UBR4-216ENST00000494503 KRT27Q7Z3Y8 459 aa14.09□□□□□ -0.15
UBR4-216ENST00000494503 BTG4Q9NY30 223 aa14.09□□□□□ -0.15
UBR4-216ENST00000494503 FAM83GA6ND36 823 aa14.08□□□□□ -0.16
UBR4-216ENST00000494503 FAM98CQ17RN3 349 aaKnown RBP14.08□□□□□ -0.16
UBR4-216ENST00000494503 ADGRB1O14514 1584 aa14.08□□□□□ -0.16
UBR4-216ENST00000494503 TRPM3Q9HCF6 1732 aaPredicted RBP14.07□□□□□ -0.16
UBR4-216ENST00000494503 TULP4Q9NRJ4 1543 aa14.07□□□□□ -0.16
UBR4-216ENST00000494503 ITSN1Q15811 1721 aa14.07□□□□□ -0.16
UBR4-216ENST00000494503 WASLO00401 505 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms