RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 C1orf167Q5SNV9 1468 aa12.06□□□□□ -0.48
HDAC6-234ENST00000493923 CCDC144AA2RUR9 1427 aa12.05□□□□□ -0.48
HDAC6-234ENST00000493923 PRAG1Q86YV5 1406 aa12.05□□□□□ -0.48
HDAC6-234ENST00000493923 ORAI2Q96SN7 254 aa12.05□□□□□ -0.48
HDAC6-234ENST00000493923 NUTM2BA6NNL0 878 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-234ENST00000493923 NUTM2EB1AL46 878 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-234ENST00000493923 TMEM132EQ6IEE7 984 aa12.04□□□□□ -0.48
HDAC6-234ENST00000493923 NUTM2AQ8IVF1 878 aaPredicted RBP12.04□□□□□ -0.48
HDAC6-234ENST00000493923 RAB3GAP2Q9H2M9 1393 aa12.04□□□□□ -0.48
HDAC6-234ENST00000493923 PLEKHH1Q9ULM0 1364 aa12.04□□□□□ -0.48
HDAC6-234ENST00000493923 WAPLQ7Z5K2 1190 aa12.03□□□□□ -0.48
HDAC6-234ENST00000493923 STK26Q9P289 416 aa12.03□□□□□ -0.48
HDAC6-234ENST00000493923 SPATA31A6Q5VVP1 1343 aa12.02□□□□□ -0.49
HDAC6-234ENST00000493923 PNPLA6Q8IY17 1366 aa12.01□□□□□ -0.49
HDAC6-234ENST00000493923 PIK3C2GO75747 1445 aa12.01□□□□□ -0.49
HDAC6-234ENST00000493923 LAMC1P11047 1609 aa12□□□□□ -0.49
HDAC6-234ENST00000493923 LRPPRCP42704 1394 aaKnown RBP12□□□□□ -0.49
HDAC6-234ENST00000493923 NUTM2FA1L443 756 aa11.99□□□□□ -0.49
HDAC6-234ENST00000493923 MEX3CQ5U5Q3 659 aaKnown RBP11.99□□□□□ -0.49
HDAC6-234ENST00000493923 ANKRD30BQ9BXX2 1392 aa11.99□□□□□ -0.49
HDAC6-234ENST00000493923 TECPR2O15040 1411 aa11.99□□□□□ -0.49
HDAC6-234ENST00000493923 KNDC1Q76NI1 1749 aa11.98□□□□□ -0.49
HDAC6-234ENST00000493923 CDC42BPGQ6DT37 1551 aa11.98□□□□□ -0.49
HDAC6-234ENST00000493923 NRXN1Q9ULB1 1477 aa11.98□□□□□ -0.49
HDAC6-234ENST00000493923 CFAP70Q5T0N1 1121 aa11.98□□□□□ -0.49
HDAC6-234ENST00000493923 YTHDC2Q9H6S0 1430 aaKnown RBP11.97□□□□□ -0.49
HDAC6-234ENST00000493923 ABCC11Q96J66 1382 aa11.97□□□□□ -0.49
HDAC6-234ENST00000493923 AFF2P51816 1311 aa11.97□□□□□ -0.49
HDAC6-234ENST00000493923 SOS2Q07890 1332 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-234ENST00000493923 XPCQ01831 940 aaPredicted RBP11.97□□□□□ -0.49
HDAC6-234ENST00000493923 LRRC59Q96AG4 307 aaKnown RBP11.97□□□□□ -0.49
HDAC6-234ENST00000493923 C14orf93Q9H972 538 aaKnown RBP11.96□□□□□ -0.49
HDAC6-234ENST00000493923 RGPD8O14715 1765 aaPredicted RBP11.95□□□□□ -0.5
HDAC6-234ENST00000493923 FMN2Q9NZ56 1722 aa11.95□□□□□ -0.5
HDAC6-234ENST00000493923 KCNA4P22459 653 aa11.95□□□□□ -0.5
HDAC6-234ENST00000493923 MYOM2P54296 1465 aa11.95□□□□□ -0.5
HDAC6-234ENST00000493923 PXDNQ92626 1479 aa11.95□□□□□ -0.5
HDAC6-234ENST00000493923 ADAMTS2O95450 1211 aa11.94□□□□□ -0.5
HDAC6-234ENST00000493923 TRIM26Q12899 539 aaPredicted RBP11.94□□□□□ -0.5
HDAC6-234ENST00000493923 ESCO1Q5FWF5 840 aa11.94□□□□□ -0.5
HDAC6-234ENST00000493923 C8orf37Q96NL8 207 aa11.94□□□□□ -0.5
HDAC6-234ENST00000493923 FOXO3O43524 673 aa11.93□□□□□ -0.5
HDAC6-234ENST00000493923 SAFB2Q14151 953 aaKnown RBP eCLIP11.93□□□□□ -0.5
HDAC6-234ENST00000493923 ZNF772Q68DY9 489 aaPredicted RBP11.93□□□□□ -0.5
HDAC6-234ENST00000493923 ADGRB1O14514 1584 aa11.92□□□□□ -0.5
HDAC6-234ENST00000493923 ACIN1Q9UKV3 1341 aaKnown RBP11.92□□□□□ -0.5
HDAC6-234ENST00000493923 COL22A1Q8NFW1 1626 aaPredicted RBP11.92□□□□□ -0.5
HDAC6-234ENST00000493923 DHX57Q6P158 1386 aaKnown RBP11.92□□□□□ -0.5
HDAC6-234ENST00000493923 CENPBP07199 599 aaPredicted RBP11.91□□□□□ -0.5
HDAC6-234ENST00000493923 KDM2AQ9Y2K7 1162 aa11.91□□□□□ -0.5
HDAC6-234ENST00000493923 RGS12O14924 1447 aa11.9□□□□□ -0.5
HDAC6-234ENST00000493923 RXRBP28702 533 aa11.9□□□□□ -0.5
HDAC6-234ENST00000493923 PRAM1Q96QH2 718 aa11.9□□□□□ -0.5
HDAC6-234ENST00000493923 USP32Q8NFA0 1604 aa11.89□□□□□ -0.51
HDAC6-234ENST00000493923 QTRT2Q9H974 415 aaKnown RBP11.89□□□□□ -0.51
HDAC6-234ENST00000493923 DCAF11Q8TEB1 546 aa11.88□□□□□ -0.51
HDAC6-234ENST00000493923 UPF1Q92900 1129 aaKnown RBP eCLIP11.88□□□□□ -0.51
HDAC6-234ENST00000493923 SIRT1Q96EB6 747 aa11.88□□□□□ -0.51
HDAC6-234ENST00000493923 NGLY1Q96IV0 654 aa11.88□□□□□ -0.51
HDAC6-234ENST00000493923 NPHP3Q7Z494 1330 aa11.87□□□□□ -0.51
HDAC6-234ENST00000493923 HIRIP3Q9BW71 556 aaPredicted RBP11.87□□□□□ -0.51
HDAC6-234ENST00000493923 TRAK1Q9UPV9 953 aa11.87□□□□□ -0.51
HDAC6-234ENST00000493923 DLC1Q96QB1 1528 aa11.86□□□□□ -0.51
HDAC6-234ENST00000493923 MARF1Q9Y4F3 1742 aaKnown RBP11.86□□□□□ -0.51
HDAC6-234ENST00000493923 CDK12Q9NYV4 1490 aaPredicted RBP11.86□□□□□ -0.51
HDAC6-234ENST00000493923 ATRNO75882 1429 aa11.86□□□□□ -0.51
HDAC6-234ENST00000493923 SPATA31A3Q5VYP0 1347 aa11.86□□□□□ -0.51
HDAC6-234ENST00000493923 PRR36Q9H6K5 1346 aa11.86□□□□□ -0.51
HDAC6-234ENST00000493923 KIF1AQ12756 1690 aa11.85□□□□□ -0.51
HDAC6-234ENST00000493923 BCL9LQ86UU0 1499 aa11.85□□□□□ -0.51
HDAC6-234ENST00000493923 RBM6P78332 1123 aaKnown RBP11.85□□□□□ -0.51
HDAC6-234ENST00000493923 KRT28Q7Z3Y7 464 aa11.85□□□□□ -0.51
HDAC6-234ENST00000493923 FNBP4Q8N3X1 1017 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-234ENST00000493923 PHF8Q9UPP1 1060 aa11.85□□□□□ -0.51
HDAC6-234ENST00000493923 MINK1Q8N4C8 1332 aaPredicted RBP11.85□□□□□ -0.51
HDAC6-234ENST00000493923 ADGRB2O60241 1585 aa11.84□□□□□ -0.51
HDAC6-234ENST00000493923 PLEKHG5O94827 1062 aa11.84□□□□□ -0.51
HDAC6-234ENST00000493923 PMFBP1Q8TBY8 1022 aa11.84□□□□□ -0.51
HDAC6-234ENST00000493923 CABLES1Q8TDN4 633 aa11.84□□□□□ -0.51
HDAC6-234ENST00000493923 USP21Q9UK80 565 aa11.84□□□□□ -0.51
HDAC6-234ENST00000493923 POGKQ9P215 609 aa11.83□□□□□ -0.52
HDAC6-234ENST00000493923 ARHGEF28Q8N1W1 1705 aaKnown RBP11.83□□□□□ -0.52
HDAC6-234ENST00000493923 ABCA3Q99758 1704 aa11.83□□□□□ -0.52
HDAC6-234ENST00000493923 TRPM3Q9HCF6 1732 aaPredicted RBP11.82□□□□□ -0.52
HDAC6-234ENST00000493923 EP400Q96L91 3159 aa11.82□□□□□ -0.52
HDAC6-234ENST00000493923 TNS3Q68CZ2 1445 aa11.81□□□□□ -0.52
HDAC6-234ENST00000493923 NBPF1Q3BBV0 1214 aa11.8□□□□□ -0.52
HDAC6-234ENST00000493923 TRPC5Q9UL62 973 aaPredicted RBP11.8□□□□□ -0.52
HDAC6-234ENST00000493923 SLIT2O94813 1529 aa11.8□□□□□ -0.52
HDAC6-234ENST00000493923 GLI3P10071 1580 aa11.79□□□□□ -0.52
HDAC6-234ENST00000493923 ANKARQ7Z5J8 1434 aa11.79□□□□□ -0.52
HDAC6-234ENST00000493923 ALS2Q96Q42 1657 aa11.78□□□□□ -0.52
HDAC6-234ENST00000493923 TULP4Q9NRJ4 1543 aa11.78□□□□□ -0.52
HDAC6-234ENST00000493923 WASLO00401 505 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-234ENST00000493923 U3KPZ7 1027 aaPredicted RBP11.78□□□□□ -0.52
HDAC6-234ENST00000493923 SBNO1A3KN83 1393 aa11.78□□□□□ -0.52
HDAC6-234ENST00000493923 PLCH1Q4KWH8 1693 aa11.78□□□□□ -0.52
HDAC6-234ENST00000493923 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.77□□□□□ -0.52
HDAC6-234ENST00000493923 BRWD3Q6RI45 1802 aa11.77□□□□□ -0.52
HDAC6-234ENST00000493923 PSME1Q06323 249 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms