RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 RSPH4AQ5TD94 716 aa7.68□□□□□ -1.18
VPS13A-212ENST00000493341 HLA-CQ95604 372 aa7.68□□□□□ -1.18
VPS13A-212ENST00000493341 PTPREP23469 700 aa7.68□□□□□ -1.18
VPS13A-212ENST00000493341 GCGRP47871 477 aa7.68□□□□□ -1.18
VPS13A-212ENST00000493341 MTMR2Q13614 643 aa7.68□□□□□ -1.18
VPS13A-212ENST00000493341 PPP4R3BQ5MIZ7 849 aa7.68□□□□□ -1.18
VPS13A-212ENST00000493341 EPS8L1Q8TE68 723 aa7.68□□□□□ -1.18
VPS13A-212ENST00000493341 TRIM6-TRIM34B2RNG4 842 aa7.67□□□□□ -1.18
VPS13A-212ENST00000493341 PPP1R3GB7ZBB8 358 aa7.67□□□□□ -1.18
VPS13A-212ENST00000493341 VRTNQ9H8Y1 702 aa7.67□□□□□ -1.18
VPS13A-212ENST00000493341 BCL2L12Q9HB09 334 aa7.67□□□□□ -1.18
VPS13A-212ENST00000493341 DOK7Q18PE1 504 aa7.66□□□□□ -1.18
VPS13A-212ENST00000493341 PRR7Q8TB68 274 aa7.66□□□□□ -1.18
VPS13A-212ENST00000493341 UCN2Q96RP3 112 aa7.66□□□□□ -1.18
VPS13A-212ENST00000493341 LHX6Q9UPM6 363 aa7.66□□□□□ -1.18
VPS13A-212ENST00000493341 RIMBP2O15034 1052 aa7.66□□□□□ -1.18
VPS13A-212ENST00000493341 MYT1LQ9UL68 1186 aa7.66□□□□□ -1.18
VPS13A-212ENST00000493341 SEMA3FQ13275 785 aa7.65□□□□□ -1.18
VPS13A-212ENST00000493341 C6orf229H3BNL8 230 aa7.64□□□□□ -1.19
VPS13A-212ENST00000493341 GPR153Q6NV75 609 aa7.64□□□□□ -1.19
VPS13A-212ENST00000493341 SND1Q7KZF4 910 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS13A-212ENST00000493341 CFAP99D6REC4 459 aa7.64□□□□□ -1.19
VPS13A-212ENST00000493341 TMEM88BA6NKF7 163 aa7.63□□□□□ -1.19
VPS13A-212ENST00000493341 ATG7O95352 703 aa7.63□□□□□ -1.19
VPS13A-212ENST00000493341 PROX2Q3B8N5 592 aa7.63□□□□□ -1.19
VPS13A-212ENST00000493341 MAFBQ9Y5Q3 323 aaPredicted RBP7.63□□□□□ -1.19
VPS13A-212ENST00000493341 IGSF3O75054 1194 aa7.62□□□□□ -1.19
VPS13A-212ENST00000493341 LOC105371045A0A1W2PR82 267 aa7.62□□□□□ -1.19
VPS13A-212ENST00000493341 SLC10A3P09131 477 aa7.62□□□□□ -1.19
VPS13A-212ENST00000493341 HOXB3P14651 431 aaPredicted RBP7.62□□□□□ -1.19
VPS13A-212ENST00000493341 SOX11P35716 441 aa7.62□□□□□ -1.19
VPS13A-212ENST00000493341 NR6A1Q15406 480 aa7.62□□□□□ -1.19
VPS13A-212ENST00000493341 TBC1D9Q6ZT07 1266 aa7.61□□□□□ -1.19
VPS13A-212ENST00000493341 ZSWIM6Q9HCJ5 1215 aa7.61□□□□□ -1.19
VPS13A-212ENST00000493341 AMOTL2Q9Y2J4 779 aa7.61□□□□□ -1.19
VPS13A-212ENST00000493341 PSDA5PKW4 1024 aaPredicted RBP7.61□□□□□ -1.19
VPS13A-212ENST00000493341 PNMA1Q8ND90 353 aa7.6□□□□□ -1.19
VPS13A-212ENST00000493341 SYMPKQ92797 1274 aaKnown RBP7.6□□□□□ -1.19
VPS13A-212ENST00000493341 SWT1Q5T5J6 900 aaKnown RBP7.59□□□□□ -1.19
VPS13A-212ENST00000493341 SLF2Q8IX21 1173 aa7.59□□□□□ -1.19
VPS13A-212ENST00000493341 EIF4G2P78344 907 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS13A-212ENST00000493341 FUT2Q10981 343 aa7.59□□□□□ -1.19
VPS13A-212ENST00000493341 GRIPAP1Q4V328 841 aa7.59□□□□□ -1.19
VPS13A-212ENST00000493341 KIAA1468Q9P260 1216 aa7.59□□□□□ -1.19
VPS13A-212ENST00000493341 ATP9BO43861 1147 aa7.58□□□□□ -1.2
VPS13A-212ENST00000493341 PER1O15534 1290 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-212ENST00000493341 KCNK17Q96T54 332 aa7.57□□□□□ -1.2
VPS13A-212ENST00000493341 HDGFP51858 240 aaKnown RBP7.57□□□□□ -1.2
VPS13A-212ENST00000493341 B4GALNT3Q6L9W6 998 aa7.56□□□□□ -1.2
VPS13A-212ENST00000493341 GNEQ9Y223 722 aaKnown RBP7.56□□□□□ -1.2
VPS13A-212ENST00000493341 SLC4A3P48751 1232 aa7.55□□□□□ -1.2
VPS13A-212ENST00000493341 KANK4Q5T7N3 995 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-212ENST00000493341 TMEM164Q5U3C3 297 aa7.54□□□□□ -1.2
VPS13A-212ENST00000493341 CCER1Q8TC90 406 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-212ENST00000493341 KCNH8Q96L42 1107 aa7.54□□□□□ -1.2
VPS13A-212ENST00000493341 SEPT9Q9UHD8 586 aaPredicted RBP7.54□□□□□ -1.2
VPS13A-212ENST00000493341 SHROOM4Q9ULL8 1493 aa7.54□□□□□ -1.2
VPS13A-212ENST00000493341 STK32AQ8WU08 396 aa7.54□□□□□ -1.2
VPS13A-212ENST00000493341 PIK3CDO00329 1044 aa7.53□□□□□ -1.2
VPS13A-212ENST00000493341 ATP6V1AP38606 617 aa7.53□□□□□ -1.2
VPS13A-212ENST00000493341 RNF40O75150 1001 aa7.52□□□□□ -1.2
VPS13A-212ENST00000493341 CFHP08603 1231 aa7.52□□□□□ -1.2
VPS13A-212ENST00000493341 ZMIZ1Q9ULJ6 1067 aa7.52□□□□□ -1.2
VPS13A-212ENST00000493341 NR1H3Q13133 447 aa7.52□□□□□ -1.21
VPS13A-212ENST00000493341 NOVA2Q9UNW9 492 aaKnown RBP7.52□□□□□ -1.21
VPS13A-212ENST00000493341 FBXO45P0C2W1 286 aa7.51□□□□□ -1.21
VPS13A-212ENST00000493341 ELOAQ14241 798 aaKnown RBP7.51□□□□□ -1.21
VPS13A-212ENST00000493341 ZBED2Q9BTP6 218 aa7.51□□□□□ -1.21
VPS13A-212ENST00000493341 USP17L3A6NCW0 530 aa7.51□□□□□ -1.21
VPS13A-212ENST00000493341 USP17L4A6NCW7 530 aa7.51□□□□□ -1.21
VPS13A-212ENST00000493341 POTEB2H3BUK9 544 aa7.51□□□□□ -1.21
VPS13A-212ENST00000493341 SKIP12755 728 aa7.51□□□□□ -1.21
VPS13A-212ENST00000493341 USP17L2Q6R6M4 530 aa7.51□□□□□ -1.21
VPS13A-212ENST00000493341 USP17L1Q7RTZ2 530 aa7.51□□□□□ -1.21
VPS13A-212ENST00000493341 RETREG3Q86VR2 466 aa7.51□□□□□ -1.21
VPS13A-212ENST00000493341 DEPDC4Q8N2C3 294 aa7.51□□□□□ -1.21
VPS13A-212ENST00000493341 UNCXA6NJT0 531 aa7.49□□□□□ -1.21
VPS13A-212ENST00000493341 ZBBXA8MT70 800 aa7.49□□□□□ -1.21
VPS13A-212ENST00000493341 PHLDB3Q6NSJ2 640 aa7.49□□□□□ -1.21
VPS13A-212ENST00000493341 SAMD7Q7Z3H4 446 aa7.49□□□□□ -1.21
VPS13A-212ENST00000493341 TXNDC2Q86VQ3 553 aa7.49□□□□□ -1.21
VPS13A-212ENST00000493341 OTUD5Q96G74 571 aa7.49□□□□□ -1.21
VPS13A-212ENST00000493341 RABGEF1Q9UJ41 708 aa7.49□□□□□ -1.21
VPS13A-212ENST00000493341 USP17L5A8MUK1 530 aa7.48□□□□□ -1.21
VPS13A-212ENST00000493341 PSEN2P49810 448 aa7.48□□□□□ -1.21
VPS13A-212ENST00000493341 PUS10Q3MIT2 529 aaKnown RBP7.48□□□□□ -1.21
VPS13A-212ENST00000493341 USP35Q9P2H5 1018 aa7.48□□□□□ -1.21
VPS13A-212ENST00000493341 ARID4AP29374 1257 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-212ENST00000493341 DESI1Q6ICB0 168 aa7.47□□□□□ -1.21
VPS13A-212ENST00000493341 NFATC2IPQ8NCF5 419 aa7.47□□□□□ -1.21
VPS13A-212ENST00000493341 MKRN1Q9UHC7 482 aaKnown RBP7.47□□□□□ -1.21
VPS13A-212ENST00000493341 CRTC2Q53ET0 693 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-212ENST00000493341 LYPD8Q6UX82 237 aa7.47□□□□□ -1.21
VPS13A-212ENST00000493341 RBM47A0AV96 593 aaKnown RBP7.46□□□□□ -1.22
VPS13A-212ENST00000493341 SSFA2P28290 1259 aa7.46□□□□□ -1.22
VPS13A-212ENST00000493341 FAM98CQ17RN3 349 aaKnown RBP7.46□□□□□ -1.22
VPS13A-212ENST00000493341 FKBPLQ9UIM3 349 aa7.46□□□□□ -1.22
VPS13A-212ENST00000493341 SLC27A5Q9Y2P5 690 aa7.46□□□□□ -1.22
VPS13A-212ENST00000493341 FAM196BA6NMK8 535 aa7.45□□□□□ -1.22
VPS13A-212ENST00000493341 USP17L15C9J2P7 530 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms