RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 ORAI2Q96SN7 254 aa13.6□□□□□ -0.23
HDAC3-212ENST00000492407 LRPPRCP42704 1394 aaKnown RBP13.59□□□□□ -0.23
HDAC3-212ENST00000492407 PPLO60437 1756 aa13.59□□□□□ -0.23
HDAC3-212ENST00000492407 QTRT2Q9H974 415 aaKnown RBP13.59□□□□□ -0.23
HDAC3-212ENST00000492407 NPHP3Q7Z494 1330 aa13.59□□□□□ -0.23
HDAC3-212ENST00000492407 ADGRF5Q8IZF2 1346 aa13.59□□□□□ -0.23
HDAC3-212ENST00000492407 DDX17Q92841 729 aaKnown RBP13.58□□□□□ -0.24
HDAC3-212ENST00000492407 NGLY1Q96IV0 654 aa13.58□□□□□ -0.24
HDAC3-212ENST00000492407 C8orf37Q96NL8 207 aa13.58□□□□□ -0.24
HDAC3-212ENST00000492407 CDC42BPGQ6DT37 1551 aa13.58□□□□□ -0.24
HDAC3-212ENST00000492407 FOXD1Q16676 465 aa13.57□□□□□ -0.24
HDAC3-212ENST00000492407 RGL3Q3MIN7 710 aa13.56□□□□□ -0.24
HDAC3-212ENST00000492407 ESCO1Q5FWF5 840 aa13.56□□□□□ -0.24
HDAC3-212ENST00000492407 FNBP4Q8N3X1 1017 aaPredicted RBP13.56□□□□□ -0.24
HDAC3-212ENST00000492407 PIK3C2GO75747 1445 aa13.56□□□□□ -0.24
HDAC3-212ENST00000492407 C14orf93Q9H972 538 aaKnown RBP13.54□□□□□ -0.24
HDAC3-212ENST00000492407 TRPC5Q9UL62 973 aaPredicted RBP13.54□□□□□ -0.24
HDAC3-212ENST00000492407 ADAMTS2O95450 1211 aa13.53□□□□□ -0.24
HDAC3-212ENST00000492407 STK26Q9P289 416 aa13.53□□□□□ -0.24
HDAC3-212ENST00000492407 COL22A1Q8NFW1 1626 aaPredicted RBP13.53□□□□□ -0.24
HDAC3-212ENST00000492407 WAPLQ7Z5K2 1190 aa13.52□□□□□ -0.25
HDAC3-212ENST00000492407 STAC3Q96MF2 364 aa13.52□□□□□ -0.25
HDAC3-212ENST00000492407 USP21Q9UK80 565 aa13.52□□□□□ -0.25
HDAC3-212ENST00000492407 YTHDC2Q9H6S0 1430 aaKnown RBP13.52□□□□□ -0.25
HDAC3-212ENST00000492407 MYOM2P54296 1465 aa13.52□□□□□ -0.25
HDAC3-212ENST00000492407 PXDNQ92626 1479 aa13.51□□□□□ -0.25
HDAC3-212ENST00000492407 NRXN1Q9ULB1 1477 aa13.51□□□□□ -0.25
HDAC3-212ENST00000492407 DHX57Q6P158 1386 aaKnown RBP13.51□□□□□ -0.25
HDAC3-212ENST00000492407 FOXO3O43524 673 aa13.51□□□□□ -0.25
HDAC3-212ENST00000492407 RGS12O14924 1447 aa13.5□□□□□ -0.25
HDAC3-212ENST00000492407 TMEM132EQ6IEE7 984 aa13.5□□□□□ -0.25
HDAC3-212ENST00000492407 IFT172Q9UG01 1749 aa13.5□□□□□ -0.25
HDAC3-212ENST00000492407 ATRNO75882 1429 aa13.49□□□□□ -0.25
HDAC3-212ENST00000492407 HRCP23327 699 aa13.49□□□□□ -0.25
HDAC3-212ENST00000492407 KNDC1Q76NI1 1749 aa13.49□□□□□ -0.25
HDAC3-212ENST00000492407 PSME1Q06323 249 aa13.48□□□□□ -0.25
HDAC3-212ENST00000492407 ATAD2Q6PL18 1390 aa13.47□□□□□ -0.25
HDAC3-212ENST00000492407 PLEKHH1Q9ULM0 1364 aa13.47□□□□□ -0.25
HDAC3-212ENST00000492407 SPATA31A3Q5VYP0 1347 aa13.47□□□□□ -0.25
HDAC3-212ENST00000492407 CCDC125Q86Z20 511 aa13.47□□□□□ -0.25
HDAC3-212ENST00000492407 CFAP70Q5T0N1 1121 aa13.46□□□□□ -0.25
HDAC3-212ENST00000492407 BCL9LQ86UU0 1499 aa13.46□□□□□ -0.25
HDAC3-212ENST00000492407 KRT28Q7Z3Y7 464 aa13.45□□□□□ -0.26
HDAC3-212ENST00000492407 PHF8Q9UPP1 1060 aa13.45□□□□□ -0.26
HDAC3-212ENST00000492407 DLC1Q96QB1 1528 aa13.44□□□□□ -0.26
HDAC3-212ENST00000492407 KIF1AQ12756 1690 aa13.44□□□□□ -0.26
HDAC3-212ENST00000492407 GJD4Q96KN9 370 aaPredicted RBP13.44□□□□□ -0.26
HDAC3-212ENST00000492407 SBNO1A3KN83 1393 aa13.44□□□□□ -0.26
HDAC3-212ENST00000492407 RAB3GAP2Q9H2M9 1393 aa13.44□□□□□ -0.26
HDAC3-212ENST00000492407 NUTM2FA1L443 756 aa13.43□□□□□ -0.26
HDAC3-212ENST00000492407 XPCQ01831 940 aaPredicted RBP13.43□□□□□ -0.26
HDAC3-212ENST00000492407 ANKARQ7Z5J8 1434 aa13.43□□□□□ -0.26
HDAC3-212ENST00000492407 UNC5CLQ8IV45 518 aa13.43□□□□□ -0.26
HDAC3-212ENST00000492407 PRAM1Q96QH2 718 aa13.43□□□□□ -0.26
HDAC3-212ENST00000492407 FMN2Q9NZ56 1722 aa13.43□□□□□ -0.26
HDAC3-212ENST00000492407 POGKQ9P215 609 aa13.42□□□□□ -0.26
HDAC3-212ENST00000492407 ARHGEF10O15013 1369 aa13.42□□□□□ -0.26
HDAC3-212ENST00000492407 EIF3AQ14152 1382 aaKnown RBP13.42□□□□□ -0.26
HDAC3-212ENST00000492407 TNS3Q68CZ2 1445 aa13.41□□□□□ -0.26
HDAC3-212ENST00000492407 SLIT2O94813 1529 aa13.41□□□□□ -0.26
HDAC3-212ENST00000492407 ONECUT3O60422 494 aaPredicted RBP13.39□□□□□ -0.27
HDAC3-212ENST00000492407 ADGRB1O14514 1584 aa13.39□□□□□ -0.27
HDAC3-212ENST00000492407 VPS72Q15906 364 aa13.38□□□□□ -0.27
HDAC3-212ENST00000492407 ADGRB2O60241 1585 aa13.37□□□□□ -0.27
HDAC3-212ENST00000492407 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.37□□□□□ -0.27
HDAC3-212ENST00000492407 MARF1Q9Y4F3 1742 aaKnown RBP13.37□□□□□ -0.27
HDAC3-212ENST00000492407 HAP1P54257 671 aaPredicted RBP13.37□□□□□ -0.27
HDAC3-212ENST00000492407 DCAF11Q8TEB1 546 aa13.37□□□□□ -0.27
HDAC3-212ENST00000492407 TRAK1Q9UPV9 953 aa13.36□□□□□ -0.27
HDAC3-212ENST00000492407 RALGAPBQ86X10 1494 aa13.36□□□□□ -0.27
HDAC3-212ENST00000492407 GPRASP1Q5JY77 1395 aa13.35□□□□□ -0.27
HDAC3-212ENST00000492407 WASLO00401 505 aaPredicted RBP13.35□□□□□ -0.27
HDAC3-212ENST00000492407 SAFB2Q14151 953 aaKnown RBP eCLIP13.35□□□□□ -0.27
HDAC3-212ENST00000492407 USP32Q8NFA0 1604 aa13.35□□□□□ -0.27
HDAC3-212ENST00000492407 ZRANB1Q9UGI0 708 aa13.34□□□□□ -0.27
HDAC3-212ENST00000492407 PMFBP1Q8TBY8 1022 aa13.33□□□□□ -0.28
HDAC3-212ENST00000492407 KDM2AQ9Y2K7 1162 aa13.33□□□□□ -0.28
HDAC3-212ENST00000492407 BLMP54132 1417 aaPredicted RBP13.32□□□□□ -0.28
HDAC3-212ENST00000492407 FAM83GA6ND36 823 aa13.32□□□□□ -0.28
HDAC3-212ENST00000492407 LMOD2Q6P5Q4 547 aa13.32□□□□□ -0.28
HDAC3-212ENST00000492407 CABLES1Q8TDN4 633 aa13.32□□□□□ -0.28
HDAC3-212ENST00000492407 TULP4Q9NRJ4 1543 aa13.32□□□□□ -0.28
HDAC3-212ENST00000492407 SEPT12Q8IYM1 358 aa13.31□□□□□ -0.28
HDAC3-212ENST00000492407 GLI3P10071 1580 aa13.31□□□□□ -0.28
HDAC3-212ENST00000492407 MINK1Q8N4C8 1332 aaPredicted RBP13.31□□□□□ -0.28
HDAC3-212ENST00000492407 NWD2Q9ULI1 1742 aa13.3□□□□□ -0.28
HDAC3-212ENST00000492407 HIRIP3Q9BW71 556 aaPredicted RBP13.3□□□□□ -0.28
HDAC3-212ENST00000492407 PRR36Q9H6K5 1346 aa13.3□□□□□ -0.28
HDAC3-212ENST00000492407 NGDNQ8NEJ9 315 aaKnown RBP13.29□□□□□ -0.28
HDAC3-212ENST00000492407 SF3B2Q13435 895 aaKnown RBP13.28□□□□□ -0.28
HDAC3-212ENST00000492407 KRT27Q7Z3Y8 459 aa13.28□□□□□ -0.28
HDAC3-212ENST00000492407 NUDT16Q96DE0 195 aaKnown RBP13.28□□□□□ -0.28
HDAC3-212ENST00000492407 EP400Q96L91 3159 aa13.28□□□□□ -0.28
HDAC3-212ENST00000492407 RGPD8O14715 1765 aaPredicted RBP13.27□□□□□ -0.28
HDAC3-212ENST00000492407 BTG4Q9NY30 223 aa13.27□□□□□ -0.29
HDAC3-212ENST00000492407 CCDC9Q9Y3X0 531 aaKnown RBP13.27□□□□□ -0.29
HDAC3-212ENST00000492407 PLEKHG3A1L390 1219 aa13.26□□□□□ -0.29
HDAC3-212ENST00000492407 TRPM3Q9HCF6 1732 aaPredicted RBP13.26□□□□□ -0.29
HDAC3-212ENST00000492407 CCDC61Q9Y6R9 512 aa13.26□□□□□ -0.29
HDAC3-212ENST00000492407 POLR3AO14802 1390 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms