RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 SPHKAPQ2M3C7 1700 aa21.43■■□□□ 1.02
EXOSC3-207ENST00000490516 HRCP23327 699 aa21.42■■□□□ 1.02
EXOSC3-207ENST00000490516 ZNF326Q5BKZ1 582 aaKnown RBP21.38■■□□□ 1.01
EXOSC3-207ENST00000490516 UNC5CLQ8IV45 518 aa21.37■■□□□ 1.01
EXOSC3-207ENST00000490516 PXDNQ92626 1479 aa21.37■■□□□ 1.01
EXOSC3-207ENST00000490516 XPCQ01831 940 aaPredicted RBP21.36■■□□□ 1.01
EXOSC3-207ENST00000490516 ROBO2Q9HCK4 1378 aa21.36■■□□□ 1.01
EXOSC3-207ENST00000490516 SLIT2O94813 1529 aa21.35■■□□□ 1.01
EXOSC3-207ENST00000490516 FAM50AQ14320 339 aaKnown RBP21.35■■□□□ 1.01
EXOSC3-207ENST00000490516 SEPT12Q8IYM1 358 aa21.35■■□□□ 1.01
EXOSC3-207ENST00000490516 NPHP3Q7Z494 1330 aa21.33■■□□□ 1.01
EXOSC3-207ENST00000490516 NEXMIFQ5QGS0 1516 aa21.33■■□□□ 1
EXOSC3-207ENST00000490516 ESCO1Q5FWF5 840 aa21.32■■□□□ 1
EXOSC3-207ENST00000490516 FOXO3O43524 673 aa21.3■■□□□ 1
EXOSC3-207ENST00000490516 APLP2Q06481 763 aa21.3■■□□□ 1
EXOSC3-207ENST00000490516 BAG6P46379 1132 aa21.29■■□□□ 1
EXOSC3-207ENST00000490516 KRT27Q7Z3Y8 459 aa21.29■■□□□ 1
EXOSC3-207ENST00000490516 NUP155O75694 1391 aa21.28■■□□□ 1
EXOSC3-207ENST00000490516 YY1P25490 414 aa21.28■■□□□ 1
EXOSC3-207ENST00000490516 USP32Q8NFA0 1604 aa21.28■■□□□ 1
EXOSC3-207ENST00000490516 LOC105371045A0A1W2PR82 267 aa21.27■■□□□ 1
EXOSC3-207ENST00000490516 PLCH1Q4KWH8 1693 aa21.26■□□□□ 0.99
EXOSC3-207ENST00000490516 R3HDM1Q15032 1099 aaKnown RBP21.26■□□□□ 0.99
EXOSC3-207ENST00000490516 CLTCL1P53675 1640 aa21.25■□□□□ 0.99
EXOSC3-207ENST00000490516 CDC42BPGQ6DT37 1551 aa21.24■□□□□ 0.99
EXOSC3-207ENST00000490516 ONECUT3O60422 494 aaPredicted RBP21.24■□□□□ 0.99
EXOSC3-207ENST00000490516 EN1Q05925 392 aaPredicted RBP21.24■□□□□ 0.99
EXOSC3-207ENST00000490516 VPS72Q15906 364 aa21.23■□□□□ 0.99
EXOSC3-207ENST00000490516 CCDC9Q9Y3X0 531 aaKnown RBP21.23■□□□□ 0.99
EXOSC3-207ENST00000490516 KIF1BO60333 1816 aa21.22■□□□□ 0.99
EXOSC3-207ENST00000490516 HFM1A2PYH4 1435 aa21.22■□□□□ 0.99
EXOSC3-207ENST00000490516 RGPD1P0DJD0 1748 aa21.22■□□□□ 0.99
EXOSC3-207ENST00000490516 NWD2Q9ULI1 1742 aa21.22■□□□□ 0.99
EXOSC3-207ENST00000490516 PRAG1Q86YV5 1406 aa21.21■□□□□ 0.99
EXOSC3-207ENST00000490516 NUTM2FA1L443 756 aa21.2■□□□□ 0.98
EXOSC3-207ENST00000490516 SPATA31A3Q5VYP0 1347 aa21.2■□□□□ 0.98
EXOSC3-207ENST00000490516 LRPPRCP42704 1394 aaKnown RBP21.2■□□□□ 0.98
EXOSC3-207ENST00000490516 A0A0G2JS52 829 aa21.18■□□□□ 0.98
EXOSC3-207ENST00000490516 MYT1Q01538 1121 aa21.18■□□□□ 0.98
EXOSC3-207ENST00000490516 TNS1Q9HBL0 1735 aaKnown RBP21.16■□□□□ 0.98
EXOSC3-207ENST00000490516 PLEKHG5O94827 1062 aa21.16■□□□□ 0.98
EXOSC3-207ENST00000490516 CABLES1Q8TDN4 633 aa21.16■□□□□ 0.98
EXOSC3-207ENST00000490516 ABCA3Q99758 1704 aa21.15■□□□□ 0.98
EXOSC3-207ENST00000490516 ROCK1Q13464 1354 aa21.15■□□□□ 0.98
EXOSC3-207ENST00000490516 HAP1P54257 671 aaPredicted RBP21.15■□□□□ 0.98
EXOSC3-207ENST00000490516 FAM182BQ5T319 152 aa21.15■□□□□ 0.98
EXOSC3-207ENST00000490516 NAIPQ13075 1403 aa21.14■□□□□ 0.98
EXOSC3-207ENST00000490516 FAM98CQ17RN3 349 aaKnown RBP21.13■□□□□ 0.97
EXOSC3-207ENST00000490516 KIF1AQ12756 1690 aa21.12■□□□□ 0.97
EXOSC3-207ENST00000490516 VGFO15240 615 aaPredicted RBP21.12■□□□□ 0.97
EXOSC3-207ENST00000490516 EZH2Q15910 746 aaKnown RBP21.11■□□□□ 0.97
EXOSC3-207ENST00000490516 KRT28Q7Z3Y7 464 aa21.11■□□□□ 0.97
EXOSC3-207ENST00000490516 NRAPQ86VF7 1730 aa21.11■□□□□ 0.97
EXOSC3-207ENST00000490516 CCDC144AA2RUR9 1427 aa21.11■□□□□ 0.97
EXOSC3-207ENST00000490516 RGPD8O14715 1765 aaPredicted RBP21.1■□□□□ 0.97
EXOSC3-207ENST00000490516 FMN2Q9NZ56 1722 aa21.1■□□□□ 0.97
EXOSC3-207ENST00000490516 DISP2A7MBM2 1401 aa21.1■□□□□ 0.97
EXOSC3-207ENST00000490516 PPLO60437 1756 aa21.09■□□□□ 0.97
EXOSC3-207ENST00000490516 TNS3Q68CZ2 1445 aa21.08■□□□□ 0.97
EXOSC3-207ENST00000490516 FAM83GA6ND36 823 aa21.07■□□□□ 0.96
EXOSC3-207ENST00000490516 WAPLQ7Z5K2 1190 aa21.07■□□□□ 0.96
EXOSC3-207ENST00000490516 CAMKK2Q96RR4 588 aa21.04■□□□□ 0.96
EXOSC3-207ENST00000490516 STK26Q9P289 416 aa21.04■□□□□ 0.96
EXOSC3-207ENST00000490516 LMOD2Q6P5Q4 547 aa21.03■□□□□ 0.96
EXOSC3-207ENST00000490516 PLEKHH1Q9ULM0 1364 aa21.02■□□□□ 0.96
EXOSC3-207ENST00000490516 ITGAEP38570 1179 aa21.02■□□□□ 0.96
EXOSC3-207ENST00000490516 THSD7AQ9UPZ6 1657 aa21.02■□□□□ 0.95
EXOSC3-207ENST00000490516 CAMTA1Q9Y6Y1 1673 aa21.02■□□□□ 0.95
EXOSC3-207ENST00000490516 ADGRB2O60241 1585 aa21.02■□□□□ 0.95
EXOSC3-207ENST00000490516 BTG4Q9NY30 223 aa21.01■□□□□ 0.95
EXOSC3-207ENST00000490516 RREB1Q92766 1687 aa21.01■□□□□ 0.95
EXOSC3-207ENST00000490516 NUP188Q5SRE5 1749 aa21.01■□□□□ 0.95
EXOSC3-207ENST00000490516 IFT172Q9UG01 1749 aa21.01■□□□□ 0.95
EXOSC3-207ENST00000490516 PSME1Q06323 249 aa21■□□□□ 0.95
EXOSC3-207ENST00000490516 TRIM37O94972 964 aa20.99■□□□□ 0.95
EXOSC3-207ENST00000490516 RPGRIP1LQ68CZ1 1315 aa20.99■□□□□ 0.95
EXOSC3-207ENST00000490516 TECPR2O15040 1411 aa20.98■□□□□ 0.95
EXOSC3-207ENST00000490516 KNDC1Q76NI1 1749 aa20.98■□□□□ 0.95
EXOSC3-207ENST00000490516 COL14A1Q05707 1796 aaKnown RBP20.97■□□□□ 0.95
EXOSC3-207ENST00000490516 DCAF8L1A6NGE4 600 aa20.97■□□□□ 0.95
EXOSC3-207ENST00000490516 PPP1R1BQ9UD71 204 aaPredicted RBP20.97■□□□□ 0.95
EXOSC3-207ENST00000490516 PHF8Q9UPP1 1060 aa20.97■□□□□ 0.95
EXOSC3-207ENST00000490516 SBNO1A3KN83 1393 aa20.97■□□□□ 0.95
EXOSC3-207ENST00000490516 ARHGEF10O15013 1369 aa20.97■□□□□ 0.95
EXOSC3-207ENST00000490516 SPATA31A5Q5VU36 1347 aa20.96■□□□□ 0.95
EXOSC3-207ENST00000490516 SPATA31A7Q8IWB4 1347 aa20.96■□□□□ 0.95
EXOSC3-207ENST00000490516 APBA3O96018 575 aa20.95■□□□□ 0.94
EXOSC3-207ENST00000490516 IFFO2Q5TF58 517 aa20.95■□□□□ 0.94
EXOSC3-207ENST00000490516 NRXN1Q9ULB1 1477 aa20.94■□□□□ 0.94
EXOSC3-207ENST00000490516 SENP3-EIF4A1A0A087X0R7 540 aa20.93■□□□□ 0.94
EXOSC3-207ENST00000490516 PARD3Q8TEW0 1356 aa20.93■□□□□ 0.94
EXOSC3-207ENST00000490516 NINLQ9Y2I6 1382 aa20.93■□□□□ 0.94
EXOSC3-207ENST00000490516 TMEM132EQ6IEE7 984 aa20.92■□□□□ 0.94
EXOSC3-207ENST00000490516 SPON1Q9HCB6 807 aa20.92■□□□□ 0.94
EXOSC3-207ENST00000490516 ADGRF5Q8IZF2 1346 aa20.92■□□□□ 0.94
EXOSC3-207ENST00000490516 FAM196AQ6ZSG2 479 aa20.91■□□□□ 0.94
EXOSC3-207ENST00000490516 ZNF784Q8NCA9 323 aaPredicted RBP20.91■□□□□ 0.94
EXOSC3-207ENST00000490516 ABCC11Q96J66 1382 aa20.91■□□□□ 0.94
EXOSC3-207ENST00000490516 TRPM3Q9HCF6 1732 aaPredicted RBP20.9■□□□□ 0.94
EXOSC3-207ENST00000490516 KCNQ2O43526 872 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms