RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ATRNO75882 1429 aa21.15■□□□□ 0.98
VARS-227ENST00000489979 PPLO60437 1756 aa21.14■□□□□ 0.97
VARS-227ENST00000489979 ESCO1Q5FWF5 840 aa21.13■□□□□ 0.97
VARS-227ENST00000489979 NPHP3Q7Z494 1330 aa21.12■□□□□ 0.97
VARS-227ENST00000489979 MYOM2P54296 1465 aa21.12■□□□□ 0.97
VARS-227ENST00000489979 RRBP1Q9P2E9 1410 aaKnown RBP21.12■□□□□ 0.97
VARS-227ENST00000489979 PXDNQ92626 1479 aa21.1■□□□□ 0.97
VARS-227ENST00000489979 CDC42BPGQ6DT37 1551 aa21.1■□□□□ 0.97
VARS-227ENST00000489979 XPCQ01831 940 aaPredicted RBP21.09■□□□□ 0.97
VARS-227ENST00000489979 SLC4A1APQ9BWU0 796 aaKnown RBP21.09■□□□□ 0.97
VARS-227ENST00000489979 MARF1Q9Y4F3 1742 aaKnown RBP21.09■□□□□ 0.97
VARS-227ENST00000489979 EP400Q96L91 3159 aa21.09■□□□□ 0.97
VARS-227ENST00000489979 BCL9LQ86UU0 1499 aa21.08■□□□□ 0.97
VARS-227ENST00000489979 FOXO3O43524 673 aa21.08■□□□□ 0.97
VARS-227ENST00000489979 ZRANB1Q9UGI0 708 aa21.07■□□□□ 0.96
VARS-227ENST00000489979 NUTM2FA1L443 756 aa21.05■□□□□ 0.96
VARS-227ENST00000489979 FOXD1Q16676 465 aa21.05■□□□□ 0.96
VARS-227ENST00000489979 ADGRF5Q8IZF2 1346 aa21.04■□□□□ 0.96
VARS-227ENST00000489979 WAPLQ7Z5K2 1190 aa21.04■□□□□ 0.96
VARS-227ENST00000489979 GJD4Q96KN9 370 aaPredicted RBP21.04■□□□□ 0.96
VARS-227ENST00000489979 STK26Q9P289 416 aa21.04■□□□□ 0.96
VARS-227ENST00000489979 LRPPRCP42704 1394 aaKnown RBP21.03■□□□□ 0.96
VARS-227ENST00000489979 CCDC125Q86Z20 511 aa21.02■□□□□ 0.96
VARS-227ENST00000489979 RGL3Q3MIN7 710 aa21■□□□□ 0.95
VARS-227ENST00000489979 TECPR2O15040 1411 aa21■□□□□ 0.95
VARS-227ENST00000489979 TNKS1BP1Q9C0C2 1729 aaKnown RBP21■□□□□ 0.95
VARS-227ENST00000489979 PLEKHH1Q9ULM0 1364 aa20.99■□□□□ 0.95
VARS-227ENST00000489979 TMEM132EQ6IEE7 984 aa20.98■□□□□ 0.95
VARS-227ENST00000489979 UNC5CLQ8IV45 518 aa20.98■□□□□ 0.95
VARS-227ENST00000489979 ABCC11Q96J66 1382 aa20.97■□□□□ 0.95
VARS-227ENST00000489979 CCDC144AA2RUR9 1427 aa20.97■□□□□ 0.95
VARS-227ENST00000489979 RALGAPBQ86X10 1494 aa20.97■□□□□ 0.95
VARS-227ENST00000489979 KNDC1Q76NI1 1749 aa20.97■□□□□ 0.95
VARS-227ENST00000489979 SLIT2O94813 1529 aa20.97■□□□□ 0.95
VARS-227ENST00000489979 SPATA31A3Q5VYP0 1347 aa20.97■□□□□ 0.95
VARS-227ENST00000489979 GLI3P10071 1580 aa20.97■□□□□ 0.95
VARS-227ENST00000489979 FMN2Q9NZ56 1722 aa20.96■□□□□ 0.95
VARS-227ENST00000489979 IFT172Q9UG01 1749 aa20.96■□□□□ 0.95
VARS-227ENST00000489979 SPATA31E1Q6ZUB1 1445 aa20.95■□□□□ 0.95
VARS-227ENST00000489979 KIF1AQ12756 1690 aa20.95■□□□□ 0.94
VARS-227ENST00000489979 ANKRD30BQ9BXX2 1392 aa20.95■□□□□ 0.94
VARS-227ENST00000489979 KRT28Q7Z3Y7 464 aa20.94■□□□□ 0.94
VARS-227ENST00000489979 BRWD3Q6RI45 1802 aa20.93■□□□□ 0.94
VARS-227ENST00000489979 USP32Q8NFA0 1604 aa20.93■□□□□ 0.94
VARS-227ENST00000489979 PIK3C2GO75747 1445 aa20.92■□□□□ 0.94
VARS-227ENST00000489979 BLMP54132 1417 aaPredicted RBP20.92■□□□□ 0.94
VARS-227ENST00000489979 YTHDC2Q9H6S0 1430 aaKnown RBP20.92■□□□□ 0.94
VARS-227ENST00000489979 RGPD8O14715 1765 aaPredicted RBP20.91■□□□□ 0.94
VARS-227ENST00000489979 HAP1P54257 671 aaPredicted RBP20.89■□□□□ 0.93
VARS-227ENST00000489979 DEFB132Q7Z7B7 95 aa20.89■□□□□ 0.93
VARS-227ENST00000489979 TNS3Q68CZ2 1445 aa20.88■□□□□ 0.93
VARS-227ENST00000489979 PLEKHG5O94827 1062 aa20.88■□□□□ 0.93
VARS-227ENST00000489979 SEPT12Q8IYM1 358 aa20.88■□□□□ 0.93
VARS-227ENST00000489979 CABLES1Q8TDN4 633 aa20.88■□□□□ 0.93
VARS-227ENST00000489979 MPHOSPH9Q99550 1183 aa20.88■□□□□ 0.93
VARS-227ENST00000489979 PHF8Q9UPP1 1060 aa20.88■□□□□ 0.93
VARS-227ENST00000489979 PSME1Q06323 249 aa20.87■□□□□ 0.93
VARS-227ENST00000489979 SIRT1Q96EB6 747 aa20.87■□□□□ 0.93
VARS-227ENST00000489979 VPS72Q15906 364 aa20.86■□□□□ 0.93
VARS-227ENST00000489979 SF3B2Q13435 895 aaKnown RBP20.85■□□□□ 0.93
VARS-227ENST00000489979 CCDC9Q9Y3X0 531 aaKnown RBP20.85■□□□□ 0.93
VARS-227ENST00000489979 PLCH1Q4KWH8 1693 aa20.85■□□□□ 0.93
VARS-227ENST00000489979 NWD2Q9ULI1 1742 aa20.84■□□□□ 0.93
VARS-227ENST00000489979 LMOD2Q6P5Q4 547 aa20.84■□□□□ 0.93
VARS-227ENST00000489979 C14orf93Q9H972 538 aaKnown RBP20.84■□□□□ 0.93
VARS-227ENST00000489979 ABCA3Q99758 1704 aa20.83■□□□□ 0.92
VARS-227ENST00000489979 SBNO1A3KN83 1393 aa20.83■□□□□ 0.92
VARS-227ENST00000489979 NRXN1Q9ULB1 1477 aa20.82■□□□□ 0.92
VARS-227ENST00000489979 ONECUT3O60422 494 aaPredicted RBP20.82■□□□□ 0.92
VARS-227ENST00000489979 SAFB2Q14151 953 aaKnown RBP eCLIP20.82■□□□□ 0.92
VARS-227ENST00000489979 CFAP70Q5T0N1 1121 aa20.82■□□□□ 0.92
VARS-227ENST00000489979 KRT27Q7Z3Y8 459 aa20.81■□□□□ 0.92
VARS-227ENST00000489979 DHX57Q6P158 1386 aaKnown RBP20.81■□□□□ 0.92
VARS-227ENST00000489979 PRAM1Q96QH2 718 aa20.8■□□□□ 0.92
VARS-227ENST00000489979 ARHGEF10O15013 1369 aa20.8■□□□□ 0.92
VARS-227ENST00000489979 FAM83GA6ND36 823 aa20.79■□□□□ 0.92
VARS-227ENST00000489979 PMFBP1Q8TBY8 1022 aa20.78■□□□□ 0.92
VARS-227ENST00000489979 A0A0G2JS52 829 aa20.76■□□□□ 0.91
VARS-227ENST00000489979 MYT1Q01538 1121 aa20.76■□□□□ 0.91
VARS-227ENST00000489979 POGKQ9P215 609 aa20.75■□□□□ 0.91
VARS-227ENST00000489979 NRAPQ86VF7 1730 aa20.75■□□□□ 0.91
VARS-227ENST00000489979 FAM98CQ17RN3 349 aaKnown RBP20.74■□□□□ 0.91
VARS-227ENST00000489979 ANKARQ7Z5J8 1434 aa20.74■□□□□ 0.91
VARS-227ENST00000489979 LRP5O75197 1615 aa20.74■□□□□ 0.91
VARS-227ENST00000489979 BAG6P46379 1132 aa20.73■□□□□ 0.91
VARS-227ENST00000489979 BTG4Q9NY30 223 aa20.73■□□□□ 0.91
VARS-227ENST00000489979 DLC1Q96QB1 1528 aa20.73■□□□□ 0.91
VARS-227ENST00000489979 TRPM3Q9HCF6 1732 aaPredicted RBP20.73■□□□□ 0.91
VARS-227ENST00000489979 PSDA5PKW4 1024 aaPredicted RBP20.71■□□□□ 0.91
VARS-227ENST00000489979 ADGRB2O60241 1585 aa20.71■□□□□ 0.91
VARS-227ENST00000489979 HIRIP3Q9BW71 556 aaPredicted RBP20.7■□□□□ 0.9
VARS-227ENST00000489979 ALS2Q96Q42 1657 aa20.7■□□□□ 0.9
VARS-227ENST00000489979 COL14A1Q05707 1796 aaKnown RBP20.69■□□□□ 0.9
VARS-227ENST00000489979 GPRASP1Q5JY77 1395 aa20.69■□□□□ 0.9
VARS-227ENST00000489979 TRAK1Q9UPV9 953 aa20.68■□□□□ 0.9
VARS-227ENST00000489979 HRCP23327 699 aa20.67■□□□□ 0.9
VARS-227ENST00000489979 MINK1Q8N4C8 1332 aaPredicted RBP20.67■□□□□ 0.9
VARS-227ENST00000489979 PRR36Q9H6K5 1346 aa20.67■□□□□ 0.9
VARS-227ENST00000489979 ADGRB1O14514 1584 aa20.67■□□□□ 0.9
VARS-227ENST00000489979 EN1Q05925 392 aaPredicted RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms