RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 ABCC2Q92887 1545 aa10.95□□□□□ -0.66
PRPF40A-210ENST00000489741 DISP1Q96F81 1524 aa10.95□□□□□ -0.66
PRPF40A-210ENST00000489741 UHRF1BP1LA0JNW5 1464 aa10.95□□□□□ -0.66
PRPF40A-210ENST00000489741 RAPGEF2Q9Y4G8 1499 aa10.95□□□□□ -0.66
PRPF40A-210ENST00000489741 METTL3Q86U44 580 aaKnown RBP10.95□□□□□ -0.66
PRPF40A-210ENST00000489741 UACAQ9BZF9 1416 aa10.94□□□□□ -0.66
PRPF40A-210ENST00000489741 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.94□□□□□ -0.66
PRPF40A-210ENST00000489741 PXYLP1Q8TE99 480 aa10.94□□□□□ -0.66
PRPF40A-210ENST00000489741 TMEM134Q9H6X4 195 aa10.94□□□□□ -0.66
PRPF40A-210ENST00000489741 TTBK1Q5TCY1 1321 aaPredicted RBP10.93□□□□□ -0.66
PRPF40A-210ENST00000489741 IQGAP2Q13576 1575 aa10.93□□□□□ -0.66
PRPF40A-210ENST00000489741 ASXL2Q76L83 1435 aa10.92□□□□□ -0.66
PRPF40A-210ENST00000489741 NECTIN2Q92692 538 aa10.92□□□□□ -0.66
PRPF40A-210ENST00000489741 UGGT2Q9NYU1 1516 aa10.92□□□□□ -0.66
PRPF40A-210ENST00000489741 PLB1Q6P1J6 1458 aa10.92□□□□□ -0.66
PRPF40A-210ENST00000489741 KDM5BQ9UGL1 1544 aa10.9□□□□□ -0.66
PRPF40A-210ENST00000489741 MAP2K5Q13163 448 aa10.9□□□□□ -0.66
PRPF40A-210ENST00000489741 GLI2P10070 1586 aa10.89□□□□□ -0.67
PRPF40A-210ENST00000489741 PRXQ9BXM0 1461 aa10.87□□□□□ -0.67
PRPF40A-210ENST00000489741 EPRSP07814 1512 aaKnown RBP10.86□□□□□ -0.67
PRPF40A-210ENST00000489741 NLRP7Q8WX94 980 aa10.86□□□□□ -0.67
PRPF40A-210ENST00000489741 KDM6BO15054 1643 aa10.86□□□□□ -0.67
PRPF40A-210ENST00000489741 COL17A1Q9UMD9 1497 aaPredicted RBP10.86□□□□□ -0.67
PRPF40A-210ENST00000489741 MINK1Q8N4C8 1332 aaPredicted RBP10.85□□□□□ -0.67
PRPF40A-210ENST00000489741 IRF6O14896 467 aa10.85□□□□□ -0.67
PRPF40A-210ENST00000489741 APLP1P51693 650 aa10.85□□□□□ -0.67
PRPF40A-210ENST00000489741 BCANQ96GW7 911 aa10.85□□□□□ -0.67
PRPF40A-210ENST00000489741 KRI1Q8N9T8 703 aaKnown RBP10.84□□□□□ -0.67
PRPF40A-210ENST00000489741 PHOX2BQ99453 314 aa10.84□□□□□ -0.67
PRPF40A-210ENST00000489741 PRR14Q9BWN1 585 aa10.84□□□□□ -0.67
PRPF40A-210ENST00000489741 ITGBL1O95965 494 aaPredicted RBP10.83□□□□□ -0.68
PRPF40A-210ENST00000489741 ZC3H15Q8WU90 426 aaKnown RBP10.83□□□□□ -0.68
PRPF40A-210ENST00000489741 CCDC102AQ96A19 550 aa10.83□□□□□ -0.68
PRPF40A-210ENST00000489741 KIAA0556O60303 1618 aa10.83□□□□□ -0.68
PRPF40A-210ENST00000489741 RSPH4AQ5TD94 716 aa10.82□□□□□ -0.68
PRPF40A-210ENST00000489741 DAXXQ9UER7 740 aaPredicted RBP10.82□□□□□ -0.68
PRPF40A-210ENST00000489741 PPRC1Q5VV67 1664 aaKnown RBP10.82□□□□□ -0.68
PRPF40A-210ENST00000489741 CFHP08603 1231 aa10.81□□□□□ -0.68
PRPF40A-210ENST00000489741 KCNC4Q03721 635 aa10.81□□□□□ -0.68
PRPF40A-210ENST00000489741 GOLGA3Q08378 1498 aa10.81□□□□□ -0.68
PRPF40A-210ENST00000489741 KMT5BQ4FZB7 885 aa10.8□□□□□ -0.68
PRPF40A-210ENST00000489741 RDH13Q8NBN7 331 aa10.8□□□□□ -0.68
PRPF40A-210ENST00000489741 MTRQ99707 1265 aa10.8□□□□□ -0.68
PRPF40A-210ENST00000489741 TSPOAP1O95153 1857 aa10.8□□□□□ -0.68
PRPF40A-210ENST00000489741 WDR7Q9Y4E6 1490 aa10.8□□□□□ -0.68
PRPF40A-210ENST00000489741 DDX11L8A8MPP1 907 aa10.79□□□□□ -0.68
PRPF40A-210ENST00000489741 ZMYND10O75800 440 aa10.79□□□□□ -0.68
PRPF40A-210ENST00000489741 SLC10A3P09131 477 aa10.79□□□□□ -0.68
PRPF40A-210ENST00000489741 IFFO2Q5TF58 517 aa10.79□□□□□ -0.68
PRPF40A-210ENST00000489741 BARGINQ6ZT62 677 aa10.79□□□□□ -0.68
PRPF40A-210ENST00000489741 ABCA8O94911 1581 aa10.78□□□□□ -0.68
PRPF40A-210ENST00000489741 ZCCHC11Q5TAX3 1644 aaKnown RBP10.78□□□□□ -0.68
PRPF40A-210ENST00000489741 SULF1Q8IWU6 871 aa10.78□□□□□ -0.68
PRPF40A-210ENST00000489741 TEX14Q8IWB6 1497 aa10.78□□□□□ -0.68
PRPF40A-210ENST00000489741 MAP3K4Q9Y6R4 1608 aa10.77□□□□□ -0.68
PRPF40A-210ENST00000489741 COPS2P61201 443 aa10.77□□□□□ -0.69
PRPF40A-210ENST00000489741 MDM2Q00987 491 aaPredicted RBP10.77□□□□□ -0.69
PRPF40A-210ENST00000489741 TJAP1Q5JTD0 557 aa10.77□□□□□ -0.69
PRPF40A-210ENST00000489741 IL21Q9HBE4 155 aa10.77□□□□□ -0.69
PRPF40A-210ENST00000489741 PCDHB3Q9Y5E6 796 aa10.77□□□□□ -0.69
PRPF40A-210ENST00000489741 CD109Q6YHK3 1445 aa10.76□□□□□ -0.69
PRPF40A-210ENST00000489741 MAGI3Q5TCQ9 1506 aa10.75□□□□□ -0.69
PRPF40A-210ENST00000489741 ACTN4O43707 911 aaKnown RBP10.74□□□□□ -0.69
PRPF40A-210ENST00000489741 ATP10BO94823 1461 aa10.74□□□□□ -0.69
PRPF40A-210ENST00000489741 A0A0G2JS52 829 aa10.73□□□□□ -0.69
PRPF40A-210ENST00000489741 ZNF516Q92618 1163 aa10.72□□□□□ -0.69
PRPF40A-210ENST00000489741 ADGRL1O94910 1474 aa10.72□□□□□ -0.69
PRPF40A-210ENST00000489741 CLCN1P35523 988 aa10.71□□□□□ -0.69
PRPF40A-210ENST00000489741 BLOC1S3Q6QNY0 202 aa10.71□□□□□ -0.69
PRPF40A-210ENST00000489741 CTTNBP2Q8WZ74 1663 aa10.71□□□□□ -0.69
PRPF40A-210ENST00000489741 FAM9AQ8IZU1 332 aaPredicted RBP10.7□□□□□ -0.7
PRPF40A-210ENST00000489741 GPCPD1Q9NPB8 672 aa10.7□□□□□ -0.7
PRPF40A-210ENST00000489741 TTLL12Q14166 644 aaPredicted RBP10.69□□□□□ -0.7
PRPF40A-210ENST00000489741 EEA1Q15075 1411 aa10.68□□□□□ -0.7
PRPF40A-210ENST00000489741 PHLDB1Q86UU1 1377 aa10.68□□□□□ -0.7
PRPF40A-210ENST00000489741 ARID3CA6NKF2 412 aa10.68□□□□□ -0.7
PRPF40A-210ENST00000489741 ZPR1O75312 459 aa10.68□□□□□ -0.7
PRPF40A-210ENST00000489741 ARAP3Q8WWN8 1544 aa10.68□□□□□ -0.7
PRPF40A-210ENST00000489741 NR1I2O75469 434 aa10.67□□□□□ -0.7
PRPF40A-210ENST00000489741 GCGRP47871 477 aa10.67□□□□□ -0.7
PRPF40A-210ENST00000489741 PUS10Q3MIT2 529 aaKnown RBP10.66□□□□□ -0.7
PRPF40A-210ENST00000489741 AK7Q96M32 723 aa10.66□□□□□ -0.7
PRPF40A-210ENST00000489741 CFAP43Q8NDM7 1665 aa10.66□□□□□ -0.7
PRPF40A-210ENST00000489741 SAMD9Q5K651 1589 aa10.65□□□□□ -0.7
PRPF40A-210ENST00000489741 CD46P15529 392 aa10.65□□□□□ -0.7
PRPF40A-210ENST00000489741 FUT2Q10981 343 aa10.65□□□□□ -0.7
PRPF40A-210ENST00000489741 NKX2-3Q8TAU0 364 aa10.65□□□□□ -0.7
PRPF40A-210ENST00000489741 TLL1O43897 1013 aa10.64□□□□□ -0.71
PRPF40A-210ENST00000489741 AMHR2Q16671 573 aa10.64□□□□□ -0.71
PRPF40A-210ENST00000489741 FAM217BQ9NTX9 383 aaPredicted RBP10.64□□□□□ -0.71
PRPF40A-210ENST00000489741 NUP153P49790 1475 aaKnown RBP10.63□□□□□ -0.71
PRPF40A-210ENST00000489741 RAPGEF3O95398 923 aa10.63□□□□□ -0.71
PRPF40A-210ENST00000489741 TRIM66O15016 1216 aa10.62□□□□□ -0.71
PRPF40A-210ENST00000489741 ATP6V1AP38606 617 aa10.62□□□□□ -0.71
PRPF40A-210ENST00000489741 TMUB1Q9BVT8 246 aa10.62□□□□□ -0.71
PRPF40A-210ENST00000489741 SLC24A3Q9HC58 644 aa10.62□□□□□ -0.71
PRPF40A-210ENST00000489741 ABCA9Q8IUA7 1624 aa10.62□□□□□ -0.71
PRPF40A-210ENST00000489741 FHOD3Q2V2M9 1422 aa10.61□□□□□ -0.71
PRPF40A-210ENST00000489741 PLEKHD1A6NEE1 506 aa10.61□□□□□ -0.71
PRPF40A-210ENST00000489741 GGCXP38435 758 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms