RNA–Protein interactions for RNA: ENST00000489537.5

SF3A3-208, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 4

Gene SF3A3, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-208ENST00000489537 ECM2O94769 699 aaPredicted RBP8.91□□□□□ -0.98
SF3A3-208ENST00000489537 CCDC144AA2RUR9 1427 aa8.9□□□□□ -0.98
SF3A3-208ENST00000489537 ZMYM3Q14202 1370 aa8.9□□□□□ -0.98
SF3A3-208ENST00000489537 DHX29Q7Z478 1369 aaKnown RBP8.9□□□□□ -0.98
SF3A3-208ENST00000489537 DPY19L2Q6NUT2 758 aa8.9□□□□□ -0.98
SF3A3-208ENST00000489537 CERKQ8TCT0 537 aa8.9□□□□□ -0.98
SF3A3-208ENST00000489537 L3MBTL2Q969R5 705 aa8.9□□□□□ -0.98
SF3A3-208ENST00000489537 RNF25Q96BH1 459 aaPredicted RBP8.9□□□□□ -0.98
SF3A3-208ENST00000489537 CLTCQ00610 1675 aaKnown RBP8.9□□□□□ -0.98
SF3A3-208ENST00000489537 SLC24A1O60721 1099 aa8.89□□□□□ -0.99
SF3A3-208ENST00000489537 GGT6Q6P531 493 aa8.89□□□□□ -0.99
SF3A3-208ENST00000489537 EIF2AK4Q9P2K8 1649 aaKnown RBP8.89□□□□□ -0.99
SF3A3-208ENST00000489537 SETD1BQ9UPS6 1966 aaKnown RBP8.89□□□□□ -0.99
SF3A3-208ENST00000489537 UHRF1BP1Q6BDS2 1440 aa8.88□□□□□ -0.99
SF3A3-208ENST00000489537 IQGAP3Q86VI3 1631 aa8.88□□□□□ -0.99
SF3A3-208ENST00000489537 FBXO31Q5XUX0 539 aaPredicted RBP8.88□□□□□ -0.99
SF3A3-208ENST00000489537 NCKAP5LQ9HCH0 1330 aa8.87□□□□□ -0.99
SF3A3-208ENST00000489537 LTBP4Q8N2S1 1624 aa8.87□□□□□ -0.99
SF3A3-208ENST00000489537 MROH2AA6NES4 1674 aa8.85□□□□□ -0.99
SF3A3-208ENST00000489537 CAMSAP1Q5T5Y3 1602 aa8.85□□□□□ -0.99
SF3A3-208ENST00000489537 ANP32CO43423 234 aa8.85□□□□□ -0.99
SF3A3-208ENST00000489537 BCL11BQ9C0K0 894 aaPredicted RBP8.85□□□□□ -0.99
SF3A3-208ENST00000489537 STK24Q9Y6E0 443 aa8.85□□□□□ -0.99
SF3A3-208ENST00000489537 CNTLNQ9NXG0 1405 aa8.85□□□□□ -0.99
SF3A3-208ENST00000489537 KIF3BO15066 747 aa8.84□□□□□ -0.99
SF3A3-208ENST00000489537 NPATQ14207 1427 aa8.84□□□□□ -0.99
SF3A3-208ENST00000489537 CDAN1Q8IWY9 1227 aa8.84□□□□□ -0.99
SF3A3-208ENST00000489537 NEURL4Q96JN8 1562 aa8.84□□□□□ -0.99
SF3A3-208ENST00000489537 ROCK2O75116 1388 aaKnown RBP8.84□□□□□ -0.99
SF3A3-208ENST00000489537 MYO3AQ8NEV4 1616 aa8.83□□□□□ -1
SF3A3-208ENST00000489537 PTPRTO14522 1441 aa8.83□□□□□ -1
SF3A3-208ENST00000489537 CCER2I3L3R5 266 aa8.83□□□□□ -1
SF3A3-208ENST00000489537 STK25O00506 426 aa8.83□□□□□ -1
SF3A3-208ENST00000489537 NLRP6P59044 892 aa8.83□□□□□ -1
SF3A3-208ENST00000489537 LMTK2Q8IWU2 1503 aa8.83□□□□□ -1
SF3A3-208ENST00000489537 DEPDC5O75140 1603 aa8.83□□□□□ -1
SF3A3-208ENST00000489537 ZNF335Q9H4Z2 1342 aaPredicted RBP8.82□□□□□ -1
SF3A3-208ENST00000489537 PRDM15P57071 1507 aaPredicted RBP8.82□□□□□ -1
SF3A3-208ENST00000489537 ESF1Q9H501 851 aaKnown RBP8.82□□□□□ -1
SF3A3-208ENST00000489537 MROH1Q8NDA8 1641 aa8.82□□□□□ -1
SF3A3-208ENST00000489537 RALGAPBQ86X10 1494 aa8.82□□□□□ -1
SF3A3-208ENST00000489537 CEP170BQ9Y4F5 1589 aaPredicted RBP8.82□□□□□ -1
SF3A3-208ENST00000489537 HSPA5P11021 654 aaKnown RBP8.81□□□□□ -1
SF3A3-208ENST00000489537 PHF8Q9UPP1 1060 aa8.81□□□□□ -1
SF3A3-208ENST00000489537 VWDEQ8N2E2 1590 aa8.81□□□□□ -1
SF3A3-208ENST00000489537 TET3O43151 1660 aa8.81□□□□□ -1
SF3A3-208ENST00000489537 ZNF142P52746 1687 aaPredicted RBP8.81□□□□□ -1
SF3A3-208ENST00000489537 RIMBP2O15034 1052 aa8.8□□□□□ -1
SF3A3-208ENST00000489537 EMP3P54852 163 aa8.8□□□□□ -1
SF3A3-208ENST00000489537 MICALL2Q8IY33 904 aa8.8□□□□□ -1
SF3A3-208ENST00000489537 ZNF710Q8N1W2 664 aa8.8□□□□□ -1
SF3A3-208ENST00000489537 DCAF11Q8TEB1 546 aa8.8□□□□□ -1
SF3A3-208ENST00000489537 TRPM2O94759 1503 aa8.8□□□□□ -1
SF3A3-208ENST00000489537 DOK7Q18PE1 504 aa8.79□□□□□ -1
SF3A3-208ENST00000489537 CDCA8Q53HL2 280 aa8.79□□□□□ -1
SF3A3-208ENST00000489537 CARD11Q9BXL7 1154 aa8.79□□□□□ -1
SF3A3-208ENST00000489537 SPATA31E1Q6ZUB1 1445 aa8.79□□□□□ -1
SF3A3-208ENST00000489537 RPGRIP1LQ68CZ1 1315 aa8.79□□□□□ -1
SF3A3-208ENST00000489537 GPRASP1Q5JY77 1395 aa8.78□□□□□ -1
SF3A3-208ENST00000489537 TNRQ92752 1358 aa8.78□□□□□ -1
SF3A3-208ENST00000489537 USP47Q96K76 1375 aa8.78□□□□□ -1
SF3A3-208ENST00000489537 DDX10Q13206 875 aaKnown RBP8.78□□□□□ -1
SF3A3-208ENST00000489537 MARVELD3Q96A59 401 aa8.78□□□□□ -1
SF3A3-208ENST00000489537 RNF17Q9BXT8 1623 aaKnown RBP8.78□□□□□ -1
SF3A3-208ENST00000489537 ABCC3O15438 1527 aa8.78□□□□□ -1
SF3A3-208ENST00000489537 A2ML1A8K2U0 1454 aa8.77□□□□□ -1
SF3A3-208ENST00000489537 KTN1Q86UP2 1357 aaKnown RBP8.77□□□□□ -1.01
SF3A3-208ENST00000489537 NBPF8Q3BBV2 869 aa8.77□□□□□ -1.01
SF3A3-208ENST00000489537 ARHGAP31Q2M1Z3 1444 aa8.77□□□□□ -1.01
SF3A3-208ENST00000489537 PLA2R1Q13018 1463 aa8.77□□□□□ -1.01
SF3A3-208ENST00000489537 EIF3AQ14152 1382 aaKnown RBP8.76□□□□□ -1.01
SF3A3-208ENST00000489537 ILDR2Q71H61 639 aa8.76□□□□□ -1.01
SF3A3-208ENST00000489537 PRAG1Q86YV5 1406 aa8.76□□□□□ -1.01
SF3A3-208ENST00000489537 WASHC2CQ9Y4E1 1318 aa8.76□□□□□ -1.01
SF3A3-208ENST00000489537 LAMC1P11047 1609 aa8.76□□□□□ -1.01
SF3A3-208ENST00000489537 EFCAB6Q5THR3 1501 aa8.75□□□□□ -1.01
SF3A3-208ENST00000489537 CCDC7Q96M83 1385 aa8.75□□□□□ -1.01
SF3A3-208ENST00000489537 RGL2O15211 777 aa8.75□□□□□ -1.01
SF3A3-208ENST00000489537 ZNF326Q5BKZ1 582 aaKnown RBP8.75□□□□□ -1.01
SF3A3-208ENST00000489537 MS4A4AQ96JQ5 239 aa8.75□□□□□ -1.01
SF3A3-208ENST00000489537 SLC52A1Q9NWF4 448 aa8.75□□□□□ -1.01
SF3A3-208ENST00000489537 CFAP65Q6ZU64 1925 aaKnown RBP8.75□□□□□ -1.01
SF3A3-208ENST00000489537 CEP152O94986 1710 aa8.74□□□□□ -1.01
SF3A3-208ENST00000489537 ALKQ9UM73 1620 aa8.74□□□□□ -1.01
SF3A3-208ENST00000489537 KDM2AQ9Y2K7 1162 aa8.74□□□□□ -1.01
SF3A3-208ENST00000489537 ZC3H13Q5T200 1668 aaKnown RBP8.74□□□□□ -1.01
SF3A3-208ENST00000489537 WASHC2AQ641Q2 1341 aa8.74□□□□□ -1.01
SF3A3-208ENST00000489537 ERVK-7P63135 1459 aa8.73□□□□□ -1.01
SF3A3-208ENST00000489537 STRCP1A6NGW2 1772 aa8.73□□□□□ -1.01
SF3A3-208ENST00000489537 SPATA31D1Q6ZQQ2 1576 aa8.73□□□□□ -1.01
SF3A3-208ENST00000489537 E9PCH4 1651 aa8.72□□□□□ -1.01
SF3A3-208ENST00000489537 MYOM2P54296 1465 aa8.72□□□□□ -1.01
SF3A3-208ENST00000489537 SPHKAPQ2M3C7 1700 aa8.72□□□□□ -1.01
SF3A3-208ENST00000489537 RGL3Q3MIN7 710 aa8.72□□□□□ -1.01
SF3A3-208ENST00000489537 FAM205CA6NFA0 338 aa8.71□□□□□ -1.02
SF3A3-208ENST00000489537 HOXB3P14651 431 aaPredicted RBP8.71□□□□□ -1.02
SF3A3-208ENST00000489537 LTKP29376 864 aa8.71□□□□□ -1.02
SF3A3-208ENST00000489537 TMF1P82094 1093 aa8.71□□□□□ -1.02
SF3A3-208ENST00000489537 FBXO22Q8NEZ5 403 aa8.71□□□□□ -1.02
SF3A3-208ENST00000489537 MFRPQ9BY79 579 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms