RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 MYT1Q01538 1121 aa18.2■□□□□ 0.5
HDAC6-233ENST00000489352 CHIC2Q9UKJ5 165 aa18.2■□□□□ 0.5
HDAC6-233ENST00000489352 ABCC5O15440 1437 aa18.2■□□□□ 0.5
HDAC6-233ENST00000489352 MYOM2P54296 1465 aa18.2■□□□□ 0.5
HDAC6-233ENST00000489352 EN1Q05925 392 aaPredicted RBP18.18■□□□□ 0.5
HDAC6-233ENST00000489352 PPP1R1BQ9UD71 204 aaPredicted RBP18.16■□□□□ 0.5
HDAC6-233ENST00000489352 NPHP3Q7Z494 1330 aa18.16■□□□□ 0.5
HDAC6-233ENST00000489352 RGPD1P0DJD0 1748 aa18.15■□□□□ 0.5
HDAC6-233ENST00000489352 DAPK1P53355 1430 aa18.15■□□□□ 0.5
HDAC6-233ENST00000489352 HAP1P54257 671 aaPredicted RBP18.14■□□□□ 0.49
HDAC6-233ENST00000489352 ESCO1Q5FWF5 840 aa18.13■□□□□ 0.49
HDAC6-233ENST00000489352 METP08581 1390 aa18.13■□□□□ 0.49
HDAC6-233ENST00000489352 SLIT2O94813 1529 aa18.12■□□□□ 0.49
HDAC6-233ENST00000489352 PTPN23Q9H3S7 1636 aa18.12■□□□□ 0.49
HDAC6-233ENST00000489352 NRXN3Q9Y4C0 1643 aa18.12■□□□□ 0.49
HDAC6-233ENST00000489352 ZNF326Q5BKZ1 582 aaKnown RBP18.11■□□□□ 0.49
HDAC6-233ENST00000489352 XPCQ01831 940 aaPredicted RBP18.1■□□□□ 0.49
HDAC6-233ENST00000489352 VPS72Q15906 364 aa18.1■□□□□ 0.49
HDAC6-233ENST00000489352 ONECUT3O60422 494 aaPredicted RBP18.09■□□□□ 0.49
HDAC6-233ENST00000489352 LRPPRCP42704 1394 aaKnown RBP18.08■□□□□ 0.49
HDAC6-233ENST00000489352 FOXO3O43524 673 aa18.08■□□□□ 0.48
HDAC6-233ENST00000489352 E9PCH4 1651 aa18.06■□□□□ 0.48
HDAC6-233ENST00000489352 ZNF784Q8NCA9 323 aaPredicted RBP18.06■□□□□ 0.48
HDAC6-233ENST00000489352 IQGAP3Q86VI3 1631 aa18.05■□□□□ 0.48
HDAC6-233ENST00000489352 EZH2Q15910 746 aaKnown RBP18.05■□□□□ 0.48
HDAC6-233ENST00000489352 KANK4Q5T7N3 995 aaPredicted RBP18.05■□□□□ 0.48
HDAC6-233ENST00000489352 PXDNQ92626 1479 aa18.05■□□□□ 0.48
HDAC6-233ENST00000489352 NWD2Q9ULI1 1742 aa18.04■□□□□ 0.48
HDAC6-233ENST00000489352 C1QTNF8P60827 252 aa18.04■□□□□ 0.48
HDAC6-233ENST00000489352 USP32Q8NFA0 1604 aa18.04■□□□□ 0.48
HDAC6-233ENST00000489352 SPON1Q9HCB6 807 aa18.03■□□□□ 0.48
HDAC6-233ENST00000489352 PLCH1Q4KWH8 1693 aa18.03■□□□□ 0.48
HDAC6-233ENST00000489352 FAM98CQ17RN3 349 aaKnown RBP18.02■□□□□ 0.48
HDAC6-233ENST00000489352 NBPF8Q3BBV2 869 aa18.02■□□□□ 0.48
HDAC6-233ENST00000489352 NBPF14Q5TI25 921 aa18.02■□□□□ 0.48
HDAC6-233ENST00000489352 ANKRD50Q9ULJ7 1429 aa18.02■□□□□ 0.48
HDAC6-233ENST00000489352 NINLQ9Y2I6 1382 aa18.02■□□□□ 0.47
HDAC6-233ENST00000489352 PLEKHG5O94827 1062 aa18.01■□□□□ 0.47
HDAC6-233ENST00000489352 ADGRL2O95490 1459 aa18.01■□□□□ 0.47
HDAC6-233ENST00000489352 FAM182BQ5T319 152 aa18■□□□□ 0.47
HDAC6-233ENST00000489352 TNS1Q9HBL0 1735 aaKnown RBP17.99■□□□□ 0.47
HDAC6-233ENST00000489352 ADGRB2O60241 1585 aa17.99■□□□□ 0.47
HDAC6-233ENST00000489352 DISP2A7MBM2 1401 aa17.98■□□□□ 0.47
HDAC6-233ENST00000489352 CAMTA1Q9Y6Y1 1673 aa17.98■□□□□ 0.47
HDAC6-233ENST00000489352 SPATA31A3Q5VYP0 1347 aa17.97■□□□□ 0.47
HDAC6-233ENST00000489352 CHD4Q14839 1912 aa17.96■□□□□ 0.47
HDAC6-233ENST00000489352 ROBO2Q9HCK4 1378 aa17.96■□□□□ 0.47
HDAC6-233ENST00000489352 KCNQ2O43526 872 aa17.96■□□□□ 0.47
HDAC6-233ENST00000489352 APBA3O96018 575 aa17.96■□□□□ 0.47
HDAC6-233ENST00000489352 CAMKK2Q96RR4 588 aa17.96■□□□□ 0.47
HDAC6-233ENST00000489352 NUTM2FA1L443 756 aa17.95■□□□□ 0.46
HDAC6-233ENST00000489352 HFM1A2PYH4 1435 aa17.95■□□□□ 0.46
HDAC6-233ENST00000489352 PARD3Q8TEW0 1356 aa17.94■□□□□ 0.46
HDAC6-233ENST00000489352 TRIM37O94972 964 aa17.94■□□□□ 0.46
HDAC6-233ENST00000489352 LMOD2Q6P5Q4 547 aa17.93■□□□□ 0.46
HDAC6-233ENST00000489352 CABLES1Q8TDN4 633 aa17.93■□□□□ 0.46
HDAC6-233ENST00000489352 KRT28Q7Z3Y7 464 aa17.92■□□□□ 0.46
HDAC6-233ENST00000489352 UTRNP46939 3433 aa17.91■□□□□ 0.46
HDAC6-233ENST00000489352 VPS8Q8N3P4 1428 aa17.91■□□□□ 0.46
HDAC6-233ENST00000489352 CDC42BPGQ6DT37 1551 aa17.91■□□□□ 0.46
HDAC6-233ENST00000489352 CCDC144AA2RUR9 1427 aa17.9■□□□□ 0.46
HDAC6-233ENST00000489352 PSME1Q06323 249 aa17.9■□□□□ 0.46
HDAC6-233ENST00000489352 APLP2Q06481 763 aa17.9■□□□□ 0.46
HDAC6-233ENST00000489352 FAM196AQ6ZSG2 479 aa17.9■□□□□ 0.46
HDAC6-233ENST00000489352 FAM83GA6ND36 823 aa17.89■□□□□ 0.45
HDAC6-233ENST00000489352 CEP350Q5VT06 3117 aa17.88■□□□□ 0.45
HDAC6-233ENST00000489352 KIF1AQ12756 1690 aa17.88■□□□□ 0.45
HDAC6-233ENST00000489352 BTG4Q9NY30 223 aa17.88■□□□□ 0.45
HDAC6-233ENST00000489352 RREB1Q92766 1687 aa17.87■□□□□ 0.45
HDAC6-233ENST00000489352 NUP188Q5SRE5 1749 aa17.87■□□□□ 0.45
HDAC6-233ENST00000489352 FAM50AQ14320 339 aaKnown RBP17.87■□□□□ 0.45
HDAC6-233ENST00000489352 NEXMIFQ5QGS0 1516 aa17.87■□□□□ 0.45
HDAC6-233ENST00000489352 KIF1BO60333 1816 aa17.86■□□□□ 0.45
HDAC6-233ENST00000489352 VGFO15240 615 aaPredicted RBP17.86■□□□□ 0.45
HDAC6-233ENST00000489352 GIGYF1O75420 1035 aaPredicted RBP17.85■□□□□ 0.45
HDAC6-233ENST00000489352 NUP155O75694 1391 aa17.85■□□□□ 0.45
HDAC6-233ENST00000489352 NRAPQ86VF7 1730 aa17.84■□□□□ 0.45
HDAC6-233ENST00000489352 ABCA3Q99758 1704 aa17.84■□□□□ 0.45
HDAC6-233ENST00000489352 TNS3Q68CZ2 1445 aa17.84■□□□□ 0.45
HDAC6-233ENST00000489352 NAIPQ13075 1403 aa17.83■□□□□ 0.45
HDAC6-233ENST00000489352 ARHGEF10O15013 1369 aa17.81■□□□□ 0.44
HDAC6-233ENST00000489352 SPATA31A5Q5VU36 1347 aa17.81■□□□□ 0.44
HDAC6-233ENST00000489352 SPATA31A7Q8IWB4 1347 aa17.81■□□□□ 0.44
HDAC6-233ENST00000489352 PRAG1Q86YV5 1406 aa17.81■□□□□ 0.44
HDAC6-233ENST00000489352 COL14A1Q05707 1796 aaKnown RBP17.8■□□□□ 0.44
HDAC6-233ENST00000489352 PDE3BQ13370 1112 aa17.79■□□□□ 0.44
HDAC6-233ENST00000489352 THSD7AQ9UPZ6 1657 aa17.79■□□□□ 0.44
HDAC6-233ENST00000489352 RGPD8O14715 1765 aaPredicted RBP17.79■□□□□ 0.44
HDAC6-233ENST00000489352 NRKQ7Z2Y5 1582 aa17.77■□□□□ 0.44
HDAC6-233ENST00000489352 FMN2Q9NZ56 1722 aa17.77■□□□□ 0.44
HDAC6-233ENST00000489352 WAPLQ7Z5K2 1190 aa17.76■□□□□ 0.43
HDAC6-233ENST00000489352 STK26Q9P289 416 aa17.76■□□□□ 0.43
HDAC6-233ENST00000489352 PHF8Q9UPP1 1060 aa17.76■□□□□ 0.43
HDAC6-233ENST00000489352 SBNO1A3KN83 1393 aa17.76■□□□□ 0.43
HDAC6-233ENST00000489352 CLTCL1P53675 1640 aa17.74■□□□□ 0.43
HDAC6-233ENST00000489352 MYOM1P52179 1685 aa17.72■□□□□ 0.43
HDAC6-233ENST00000489352 SYT17Q9BSW7 474 aa17.72■□□□□ 0.43
HDAC6-233ENST00000489352 ZBTB7AO95365 584 aa17.71■□□□□ 0.43
HDAC6-233ENST00000489352 FHDC1Q9C0D6 1143 aaPredicted RBP17.71■□□□□ 0.43
HDAC6-233ENST00000489352 RRBP1Q9P2E9 1410 aaKnown RBP17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms