RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 YTHDC2Q9H6S0 1430 aaKnown RBP17.91■□□□□ 0.46
SQSTM1-207ENST00000481335 SIRT1Q96EB6 747 aa17.91■□□□□ 0.46
SQSTM1-207ENST00000481335 SOS2Q07890 1332 aaPredicted RBP17.91■□□□□ 0.46
SQSTM1-207ENST00000481335 FMN2Q9NZ56 1722 aa17.9■□□□□ 0.46
SQSTM1-207ENST00000481335 COL22A1Q8NFW1 1626 aaPredicted RBP17.9■□□□□ 0.46
SQSTM1-207ENST00000481335 C14orf93Q9H972 538 aaKnown RBP17.89■□□□□ 0.45
SQSTM1-207ENST00000481335 KIF1AQ12756 1690 aa17.89■□□□□ 0.45
SQSTM1-207ENST00000481335 STAC3Q96MF2 364 aa17.88■□□□□ 0.45
SQSTM1-207ENST00000481335 DLC1Q96QB1 1528 aa17.88■□□□□ 0.45
SQSTM1-207ENST00000481335 NPHP3Q7Z494 1330 aa17.87■□□□□ 0.45
SQSTM1-207ENST00000481335 DHX57Q6P158 1386 aaKnown RBP17.87■□□□□ 0.45
SQSTM1-207ENST00000481335 CDK12Q9NYV4 1490 aaPredicted RBP17.87■□□□□ 0.45
SQSTM1-207ENST00000481335 ORAI2Q96SN7 254 aa17.86■□□□□ 0.45
SQSTM1-207ENST00000481335 PXDNQ92626 1479 aa17.84■□□□□ 0.45
SQSTM1-207ENST00000481335 TMEM132EQ6IEE7 984 aa17.84■□□□□ 0.45
SQSTM1-207ENST00000481335 DDX17Q92841 729 aaKnown RBP17.84■□□□□ 0.45
SQSTM1-207ENST00000481335 STK26Q9P289 416 aa17.84■□□□□ 0.45
SQSTM1-207ENST00000481335 NUTM2BA6NNL0 878 aaPredicted RBP17.83■□□□□ 0.44
SQSTM1-207ENST00000481335 NUTM2EB1AL46 878 aaPredicted RBP17.83■□□□□ 0.44
SQSTM1-207ENST00000481335 WAPLQ7Z5K2 1190 aa17.83■□□□□ 0.44
SQSTM1-207ENST00000481335 NUTM2AQ8IVF1 878 aaPredicted RBP17.83■□□□□ 0.44
SQSTM1-207ENST00000481335 ADGRB1O14514 1584 aa17.83■□□□□ 0.44
SQSTM1-207ENST00000481335 ADGRB2O60241 1585 aa17.83■□□□□ 0.44
SQSTM1-207ENST00000481335 PLEKHH1Q9ULM0 1364 aa17.82■□□□□ 0.44
SQSTM1-207ENST00000481335 MARF1Q9Y4F3 1742 aaKnown RBP17.82■□□□□ 0.44
SQSTM1-207ENST00000481335 ESCO1Q5FWF5 840 aa17.82■□□□□ 0.44
SQSTM1-207ENST00000481335 AFF2P51816 1311 aa17.81■□□□□ 0.44
SQSTM1-207ENST00000481335 CFAP70Q5T0N1 1121 aa17.8■□□□□ 0.44
SQSTM1-207ENST00000481335 RXRBP28702 533 aa17.79■□□□□ 0.44
SQSTM1-207ENST00000481335 RGPD8O14715 1765 aaPredicted RBP17.79■□□□□ 0.44
SQSTM1-207ENST00000481335 C8orf37Q96NL8 207 aa17.77■□□□□ 0.44
SQSTM1-207ENST00000481335 ANKARQ7Z5J8 1434 aa17.77■□□□□ 0.44
SQSTM1-207ENST00000481335 EIF3AQ14152 1382 aaKnown RBP17.76■□□□□ 0.43
SQSTM1-207ENST00000481335 KIAA1210Q9ULL0 1709 aa17.75■□□□□ 0.43
SQSTM1-207ENST00000481335 FOXO3O43524 673 aa17.75■□□□□ 0.43
SQSTM1-207ENST00000481335 PRAM1Q96QH2 718 aa17.74■□□□□ 0.43
SQSTM1-207ENST00000481335 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.74■□□□□ 0.43
SQSTM1-207ENST00000481335 ARHGEF28Q8N1W1 1705 aaKnown RBP17.73■□□□□ 0.43
SQSTM1-207ENST00000481335 RBM6P78332 1123 aaKnown RBP17.73■□□□□ 0.43
SQSTM1-207ENST00000481335 DCAF11Q8TEB1 546 aa17.73■□□□□ 0.43
SQSTM1-207ENST00000481335 NGLY1Q96IV0 654 aa17.73■□□□□ 0.43
SQSTM1-207ENST00000481335 USP32Q8NFA0 1604 aa17.72■□□□□ 0.43
SQSTM1-207ENST00000481335 ADAMTS2O95450 1211 aa17.72■□□□□ 0.43
SQSTM1-207ENST00000481335 FNBP4Q8N3X1 1017 aaPredicted RBP17.72■□□□□ 0.43
SQSTM1-207ENST00000481335 POGKQ9P215 609 aa17.72■□□□□ 0.43
SQSTM1-207ENST00000481335 SPATA31A3Q5VYP0 1347 aa17.72■□□□□ 0.43
SQSTM1-207ENST00000481335 NUTM2FA1L443 756 aa17.71■□□□□ 0.43
SQSTM1-207ENST00000481335 QTRT2Q9H974 415 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-207ENST00000481335 TNS3Q68CZ2 1445 aa17.71■□□□□ 0.43
SQSTM1-207ENST00000481335 ITSN1Q15811 1721 aa17.7■□□□□ 0.42
SQSTM1-207ENST00000481335 SBNO1A3KN83 1393 aa17.7■□□□□ 0.42
SQSTM1-207ENST00000481335 PHF8Q9UPP1 1060 aa17.7■□□□□ 0.42
SQSTM1-207ENST00000481335 TULP4Q9NRJ4 1543 aa17.7■□□□□ 0.42
SQSTM1-207ENST00000481335 RGS12O14924 1447 aa17.7■□□□□ 0.42
SQSTM1-207ENST00000481335 PSME1Q06323 249 aa17.69■□□□□ 0.42
SQSTM1-207ENST00000481335 USP21Q9UK80 565 aa17.69■□□□□ 0.42
SQSTM1-207ENST00000481335 TRPC5Q9UL62 973 aaPredicted RBP17.69■□□□□ 0.42
SQSTM1-207ENST00000481335 ATRNO75882 1429 aa17.69■□□□□ 0.42
SQSTM1-207ENST00000481335 ABCA3Q99758 1704 aa17.68■□□□□ 0.42
SQSTM1-207ENST00000481335 KDM2AQ9Y2K7 1162 aa17.68■□□□□ 0.42
SQSTM1-207ENST00000481335 ARHGEF10O15013 1369 aa17.67■□□□□ 0.42
SQSTM1-207ENST00000481335 XPCQ01831 940 aaPredicted RBP17.67■□□□□ 0.42
SQSTM1-207ENST00000481335 KRT28Q7Z3Y7 464 aa17.67■□□□□ 0.42
SQSTM1-207ENST00000481335 TRAK1Q9UPV9 953 aa17.67■□□□□ 0.42
SQSTM1-207ENST00000481335 SAFB2Q14151 953 aaKnown RBP eCLIP17.66■□□□□ 0.42
SQSTM1-207ENST00000481335 TRPM3Q9HCF6 1732 aaPredicted RBP17.66■□□□□ 0.42
SQSTM1-207ENST00000481335 NWD2Q9ULI1 1742 aa17.66■□□□□ 0.42
SQSTM1-207ENST00000481335 BCL9LQ86UU0 1499 aa17.65■□□□□ 0.42
SQSTM1-207ENST00000481335 UPF1Q92900 1129 aaKnown RBP eCLIP17.65■□□□□ 0.42
SQSTM1-207ENST00000481335 SLIT2O94813 1529 aa17.64■□□□□ 0.41
SQSTM1-207ENST00000481335 ALS2Q96Q42 1657 aa17.64■□□□□ 0.41
SQSTM1-207ENST00000481335 WASLO00401 505 aaPredicted RBP17.62■□□□□ 0.41
SQSTM1-207ENST00000481335 PLCH1Q4KWH8 1693 aa17.61■□□□□ 0.41
SQSTM1-207ENST00000481335 MINK1Q8N4C8 1332 aaPredicted RBP17.61■□□□□ 0.41
SQSTM1-207ENST00000481335 GPRASP1Q5JY77 1395 aa17.61■□□□□ 0.41
SQSTM1-207ENST00000481335 ATP7BP35670 1465 aa17.61■□□□□ 0.41
SQSTM1-207ENST00000481335 ATAD2Q6PL18 1390 aa17.6■□□□□ 0.41
SQSTM1-207ENST00000481335 TOPAZ1Q8N9V7 1692 aa17.6■□□□□ 0.41
SQSTM1-207ENST00000481335 HIRIP3Q9BW71 556 aaPredicted RBP17.59■□□□□ 0.41
SQSTM1-207ENST00000481335 PRR36Q9H6K5 1346 aa17.58■□□□□ 0.4
SQSTM1-207ENST00000481335 UNC5CLQ8IV45 518 aa17.58■□□□□ 0.4
SQSTM1-207ENST00000481335 CRYBG1Q9Y4K1 1723 aa17.58■□□□□ 0.4
SQSTM1-207ENST00000481335 EP400Q96L91 3159 aa17.57■□□□□ 0.4
SQSTM1-207ENST00000481335 HAP1P54257 671 aaPredicted RBP17.57■□□□□ 0.4
SQSTM1-207ENST00000481335 PMFBP1Q8TBY8 1022 aa17.57■□□□□ 0.4
SQSTM1-207ENST00000481335 GJD4Q96KN9 370 aaPredicted RBP17.57■□□□□ 0.4
SQSTM1-207ENST00000481335 GLI3P10071 1580 aa17.56■□□□□ 0.4
SQSTM1-207ENST00000481335 COL14A1Q05707 1796 aaKnown RBP17.55■□□□□ 0.4
SQSTM1-207ENST00000481335 RALGAPBQ86X10 1494 aa17.55■□□□□ 0.4
SQSTM1-207ENST00000481335 NRAPQ86VF7 1730 aa17.54■□□□□ 0.4
SQSTM1-207ENST00000481335 NGDNQ8NEJ9 315 aaKnown RBP17.53■□□□□ 0.4
SQSTM1-207ENST00000481335 POLR3AO14802 1390 aaPredicted RBP17.53■□□□□ 0.4
SQSTM1-207ENST00000481335 QRICH2Q9H0J4 1663 aa17.52■□□□□ 0.4
SQSTM1-207ENST00000481335 TRPM1Q7Z4N2 1603 aa17.52■□□□□ 0.4
SQSTM1-207ENST00000481335 LMOD2Q6P5Q4 547 aa17.52■□□□□ 0.4
SQSTM1-207ENST00000481335 NUDT16Q96DE0 195 aaKnown RBP17.52■□□□□ 0.4
SQSTM1-207ENST00000481335 VPS72Q15906 364 aa17.51■□□□□ 0.39
SQSTM1-207ENST00000481335 CCDC125Q86Z20 511 aa17.5■□□□□ 0.39
SQSTM1-207ENST00000481335 CABLES1Q8TDN4 633 aa17.5■□□□□ 0.39
SQSTM1-207ENST00000481335 CCDC61Q9Y6R9 512 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms