RNA–Protein interactions for RNA: ENST00000479525.6

ECHDC1-216, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 5

Gene ECHDC1, Length 1,368 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-216ENST00000479525 LRPPRCP42704 1394 aaKnown RBP25.7■■□□□ 1.7
ECHDC1-216ENST00000479525 PNPLA6Q8IY17 1366 aa25.7■■□□□ 1.7
ECHDC1-216ENST00000479525 CFAP70Q5T0N1 1121 aa25.69■■□□□ 1.7
ECHDC1-216ENST00000479525 LAMC1P11047 1609 aa25.69■■□□□ 1.7
ECHDC1-216ENST00000479525 YTHDC2Q9H6S0 1430 aaKnown RBP25.69■■□□□ 1.7
ECHDC1-216ENST00000479525 LRRC59Q96AG4 307 aaKnown RBP25.69■■□□□ 1.7
ECHDC1-216ENST00000479525 XPCQ01831 940 aaPredicted RBP25.68■■□□□ 1.7
ECHDC1-216ENST00000479525 FMN2Q9NZ56 1722 aa25.67■■□□□ 1.7
ECHDC1-216ENST00000479525 ESCO1Q5FWF5 840 aa25.67■■□□□ 1.7
ECHDC1-216ENST00000479525 TECPR2O15040 1411 aa25.66■■□□□ 1.7
ECHDC1-216ENST00000479525 SAFB2Q14151 953 aaKnown RBP eCLIP25.65■■□□□ 1.7
ECHDC1-216ENST00000479525 AFF2P51816 1311 aa25.64■■□□□ 1.7
ECHDC1-216ENST00000479525 MYOM2P54296 1465 aa25.64■■□□□ 1.7
ECHDC1-216ENST00000479525 NRXN1Q9ULB1 1477 aa25.64■■□□□ 1.7
ECHDC1-216ENST00000479525 C8orf37Q96NL8 207 aa25.64■■□□□ 1.69
ECHDC1-216ENST00000479525 ABCC11Q96J66 1382 aa25.63■■□□□ 1.69
ECHDC1-216ENST00000479525 ADAMTS2O95450 1211 aa25.63■■□□□ 1.69
ECHDC1-216ENST00000479525 KDM2AQ9Y2K7 1162 aa25.63■■□□□ 1.69
ECHDC1-216ENST00000479525 C14orf93Q9H972 538 aaKnown RBP25.61■■□□□ 1.69
ECHDC1-216ENST00000479525 SOS2Q07890 1332 aaPredicted RBP25.61■■□□□ 1.69
ECHDC1-216ENST00000479525 ZNF772Q68DY9 489 aaPredicted RBP25.6■■□□□ 1.69
ECHDC1-216ENST00000479525 FOXO3O43524 673 aa25.58■■□□□ 1.69
ECHDC1-216ENST00000479525 PXDNQ92626 1479 aa25.57■■□□□ 1.68
ECHDC1-216ENST00000479525 ACIN1Q9UKV3 1341 aaKnown RBP25.56■■□□□ 1.68
ECHDC1-216ENST00000479525 DHX57Q6P158 1386 aaKnown RBP25.55■■□□□ 1.68
ECHDC1-216ENST00000479525 DCAF11Q8TEB1 546 aa25.55■■□□□ 1.68
ECHDC1-216ENST00000479525 PRAM1Q96QH2 718 aa25.55■■□□□ 1.68
ECHDC1-216ENST00000479525 COL22A1Q8NFW1 1626 aaPredicted RBP25.54■■□□□ 1.68
ECHDC1-216ENST00000479525 MARF1Q9Y4F3 1742 aaKnown RBP25.53■■□□□ 1.68
ECHDC1-216ENST00000479525 ADGRB1O14514 1584 aa25.53■■□□□ 1.68
ECHDC1-216ENST00000479525 PLEKHG5O94827 1062 aa25.53■■□□□ 1.68
ECHDC1-216ENST00000479525 NPHP3Q7Z494 1330 aa25.52■■□□□ 1.68
ECHDC1-216ENST00000479525 TRAK1Q9UPV9 953 aa25.52■■□□□ 1.68
ECHDC1-216ENST00000479525 KIF1AQ12756 1690 aa25.52■■□□□ 1.68
ECHDC1-216ENST00000479525 RXRBP28702 533 aa25.51■■□□□ 1.67
ECHDC1-216ENST00000479525 NGLY1Q96IV0 654 aa25.51■■□□□ 1.67
ECHDC1-216ENST00000479525 USP32Q8NFA0 1604 aa25.51■■□□□ 1.67
ECHDC1-216ENST00000479525 HIRIP3Q9BW71 556 aaPredicted RBP25.5■■□□□ 1.67
ECHDC1-216ENST00000479525 QTRT2Q9H974 415 aaKnown RBP25.48■■□□□ 1.67
ECHDC1-216ENST00000479525 POGKQ9P215 609 aa25.48■■□□□ 1.67
ECHDC1-216ENST00000479525 DLC1Q96QB1 1528 aa25.46■■□□□ 1.67
ECHDC1-216ENST00000479525 ARHGEF28Q8N1W1 1705 aaKnown RBP25.45■■□□□ 1.67
ECHDC1-216ENST00000479525 MINK1Q8N4C8 1332 aaPredicted RBP25.45■■□□□ 1.66
ECHDC1-216ENST00000479525 RGS12O14924 1447 aa25.45■■□□□ 1.66
ECHDC1-216ENST00000479525 KRT28Q7Z3Y7 464 aa25.43■■□□□ 1.66
ECHDC1-216ENST00000479525 PMFBP1Q8TBY8 1022 aa25.43■■□□□ 1.66
ECHDC1-216ENST00000479525 SIRT1Q96EB6 747 aa25.43■■□□□ 1.66
ECHDC1-216ENST00000479525 USP21Q9UK80 565 aa25.43■■□□□ 1.66
ECHDC1-216ENST00000479525 PHF8Q9UPP1 1060 aa25.43■■□□□ 1.66
ECHDC1-216ENST00000479525 ADGRB2O60241 1585 aa25.42■■□□□ 1.66
ECHDC1-216ENST00000479525 HRCP23327 699 aa25.42■■□□□ 1.66
ECHDC1-216ENST00000479525 ABCA3Q99758 1704 aa25.39■■□□□ 1.66
ECHDC1-216ENST00000479525 UPF1Q92900 1129 aaKnown RBP eCLIP25.39■■□□□ 1.651e-6■□□□□ 8
ECHDC1-216ENST00000479525 SPATA31A3Q5VYP0 1347 aa25.39■■□□□ 1.65
ECHDC1-216ENST00000479525 RBM6P78332 1123 aaKnown RBP25.38■■□□□ 1.65
ECHDC1-216ENST00000479525 LMOD2Q6P5Q4 547 aa25.38■■□□□ 1.65
ECHDC1-216ENST00000479525 CABLES1Q8TDN4 633 aa25.38■■□□□ 1.65
ECHDC1-216ENST00000479525 CDK12Q9NYV4 1490 aaPredicted RBP25.37■■□□□ 1.65
ECHDC1-216ENST00000479525 PRR36Q9H6K5 1346 aa25.36■■□□□ 1.65
ECHDC1-216ENST00000479525 TNS3Q68CZ2 1445 aa25.35■■□□□ 1.65
ECHDC1-216ENST00000479525 TRPM3Q9HCF6 1732 aaPredicted RBP25.34■■□□□ 1.65
ECHDC1-216ENST00000479525 FNBP4Q8N3X1 1017 aaPredicted RBP25.33■■□□□ 1.65
ECHDC1-216ENST00000479525 ATRNO75882 1429 aa25.33■■□□□ 1.65
ECHDC1-216ENST00000479525 BCL9LQ86UU0 1499 aa25.33■■□□□ 1.65
ECHDC1-216ENST00000479525 TULP4Q9NRJ4 1543 aa25.31■■□□□ 1.64
ECHDC1-216ENST00000479525 PLCH1Q4KWH8 1693 aa25.31■■□□□ 1.64
ECHDC1-216ENST00000479525 PSME1Q06323 249 aa25.31■■□□□ 1.64
ECHDC1-216ENST00000479525 TRPC5Q9UL62 973 aaPredicted RBP25.31■■□□□ 1.64
ECHDC1-216ENST00000479525 ANKARQ7Z5J8 1434 aa25.3■■□□□ 1.64
ECHDC1-216ENST00000479525 HAP1P54257 671 aaPredicted RBP25.3■■□□□ 1.64
ECHDC1-216ENST00000479525 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.29■■□□□ 1.64
ECHDC1-216ENST00000479525 KIAA1210Q9ULL0 1709 aa25.29■■□□□ 1.64
ECHDC1-216ENST00000479525 NBPF1Q3BBV0 1214 aa25.29■■□□□ 1.64
ECHDC1-216ENST00000479525 WASLO00401 505 aaPredicted RBP25.28■■□□□ 1.64
ECHDC1-216ENST00000479525 ALS2Q96Q42 1657 aa25.28■■□□□ 1.64
ECHDC1-216ENST00000479525 ITSN1Q15811 1721 aa25.27■■□□□ 1.64
ECHDC1-216ENST00000479525 SIN3AQ96ST3 1273 aa25.26■■□□□ 1.63
ECHDC1-216ENST00000479525 GLI3P10071 1580 aa25.25■■□□□ 1.63
ECHDC1-216ENST00000479525 BRWD3Q6RI45 1802 aa25.25■■□□□ 1.63
ECHDC1-216ENST00000479525 SBNO1A3KN83 1393 aa25.24■■□□□ 1.63
ECHDC1-216ENST00000479525 SLIT2O94813 1529 aa25.23■■□□□ 1.63
ECHDC1-216ENST00000479525 ATP7BP35670 1465 aa25.23■■□□□ 1.63
ECHDC1-216ENST00000479525 CRYBG1Q9Y4K1 1723 aa25.22■■□□□ 1.63
ECHDC1-216ENST00000479525 STAC3Q96MF2 364 aa25.21■■□□□ 1.63
ECHDC1-216ENST00000479525 TOPAZ1Q8N9V7 1692 aa25.21■■□□□ 1.63
ECHDC1-216ENST00000479525 NGDNQ8NEJ9 315 aaKnown RBP25.2■■□□□ 1.63
ECHDC1-216ENST00000479525 PAK3O75914 559 aaPredicted RBP25.19■■□□□ 1.62
ECHDC1-216ENST00000479525 NEUROD1Q13562 356 aa25.19■■□□□ 1.62
ECHDC1-216ENST00000479525 UNC5CLQ8IV45 518 aa25.19■■□□□ 1.62
ECHDC1-216ENST00000479525 GJD4Q96KN9 370 aaPredicted RBP25.19■■□□□ 1.62
ECHDC1-216ENST00000479525 RALGAPBQ86X10 1494 aa25.19■■□□□ 1.62
ECHDC1-216ENST00000479525 QRICH2Q9H0J4 1663 aa25.19■■□□□ 1.62
ECHDC1-216ENST00000479525 NWD2Q9ULI1 1742 aa25.19■■□□□ 1.62
ECHDC1-216ENST00000479525 NUDT16Q96DE0 195 aaKnown RBP25.18■■□□□ 1.62
ECHDC1-216ENST00000479525 CDK19Q9BWU1 502 aa25.18■■□□□ 1.62
ECHDC1-216ENST00000479525 ARHGEF10O15013 1369 aa25.18■■□□□ 1.62
ECHDC1-216ENST00000479525 EP400Q96L91 3159 aa25.18■■□□□ 1.62
ECHDC1-216ENST00000479525 EIF3AQ14152 1382 aaKnown RBP25.18■■□□□ 1.62
ECHDC1-216ENST00000479525 GPRASP1Q5JY77 1395 aa25.18■■□□□ 1.62
ECHDC1-216ENST00000479525 NRAPQ86VF7 1730 aa25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms