RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 MPHOSPH9Q99550 1183 aa19.75■□□□□ 0.75
VCL-205ENST00000478896 NGLY1Q96IV0 654 aa19.74■□□□□ 0.75
VCL-205ENST00000478896 SPATA31E1Q6ZUB1 1445 aa19.74■□□□□ 0.75
VCL-205ENST00000478896 KNDC1Q76NI1 1749 aa19.73■□□□□ 0.75
VCL-205ENST00000478896 ESCO1Q5FWF5 840 aa19.73■□□□□ 0.75
VCL-205ENST00000478896 QTRT2Q9H974 415 aaKnown RBP19.73■□□□□ 0.75
VCL-205ENST00000478896 STK26Q9P289 416 aa19.73■□□□□ 0.75
VCL-205ENST00000478896 RGS12O14924 1447 aa19.72■□□□□ 0.75
VCL-205ENST00000478896 RBM6P78332 1123 aaKnown RBP19.72■□□□□ 0.75
VCL-205ENST00000478896 NPHP3Q7Z494 1330 aa19.72■□□□□ 0.75
VCL-205ENST00000478896 COL22A1Q8NFW1 1626 aaPredicted RBP19.71■□□□□ 0.75
VCL-205ENST00000478896 LRPPRCP42704 1394 aaKnown RBP19.7■□□□□ 0.74
VCL-205ENST00000478896 TECPR2O15040 1411 aa19.7■□□□□ 0.74
VCL-205ENST00000478896 PIK3C2GO75747 1445 aa19.7■□□□□ 0.74
VCL-205ENST00000478896 NUTM2FA1L443 756 aa19.69■□□□□ 0.74
VCL-205ENST00000478896 WAPLQ7Z5K2 1190 aa19.68■□□□□ 0.74
VCL-205ENST00000478896 USP21Q9UK80 565 aa19.68■□□□□ 0.74
VCL-205ENST00000478896 TMEM132EQ6IEE7 984 aa19.67■□□□□ 0.74
VCL-205ENST00000478896 PXDNQ92626 1479 aa19.67■□□□□ 0.74
VCL-205ENST00000478896 FMN2Q9NZ56 1722 aa19.66■□□□□ 0.74
VCL-205ENST00000478896 XPCQ01831 940 aaPredicted RBP19.66■□□□□ 0.74
VCL-205ENST00000478896 ABCC11Q96J66 1382 aa19.66■□□□□ 0.74
VCL-205ENST00000478896 PLEKHH1Q9ULM0 1364 aa19.66■□□□□ 0.74
VCL-205ENST00000478896 YTHDC2Q9H6S0 1430 aaKnown RBP19.66■□□□□ 0.74
VCL-205ENST00000478896 MARF1Q9Y4F3 1742 aaKnown RBP19.65■□□□□ 0.74
VCL-205ENST00000478896 FOXO3O43524 673 aa19.65■□□□□ 0.74
VCL-205ENST00000478896 TRPC5Q9UL62 973 aaPredicted RBP19.65■□□□□ 0.74
VCL-205ENST00000478896 ACIN1Q9UKV3 1341 aaKnown RBP19.65■□□□□ 0.74
VCL-205ENST00000478896 MYOM2P54296 1465 aa19.65■□□□□ 0.74
VCL-205ENST00000478896 KIF1AQ12756 1690 aa19.65■□□□□ 0.74
VCL-205ENST00000478896 FNBP4Q8N3X1 1017 aaPredicted RBP19.6■□□□□ 0.73
VCL-205ENST00000478896 ATRNO75882 1429 aa19.59■□□□□ 0.73
VCL-205ENST00000478896 ATAD2Q6PL18 1390 aa19.59■□□□□ 0.73
VCL-205ENST00000478896 RGPD8O14715 1765 aaPredicted RBP19.59■□□□□ 0.73
VCL-205ENST00000478896 DHX57Q6P158 1386 aaKnown RBP19.58■□□□□ 0.73
VCL-205ENST00000478896 C14orf93Q9H972 538 aaKnown RBP19.58■□□□□ 0.72
VCL-205ENST00000478896 NRXN1Q9ULB1 1477 aa19.58■□□□□ 0.72
VCL-205ENST00000478896 CFAP70Q5T0N1 1121 aa19.57■□□□□ 0.72
VCL-205ENST00000478896 RAB3GAP2Q9H2M9 1393 aa19.57■□□□□ 0.72
VCL-205ENST00000478896 SAFB2Q14151 953 aaKnown RBP eCLIP19.55■□□□□ 0.72
VCL-205ENST00000478896 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.55■□□□□ 0.72
VCL-205ENST00000478896 USP32Q8NFA0 1604 aa19.54■□□□□ 0.72
VCL-205ENST00000478896 BCL9LQ86UU0 1499 aa19.54■□□□□ 0.72
VCL-205ENST00000478896 HAP1P54257 671 aaPredicted RBP19.54■□□□□ 0.72
VCL-205ENST00000478896 SIRT1Q96EB6 747 aa19.54■□□□□ 0.72
VCL-205ENST00000478896 SPATA31A3Q5VYP0 1347 aa19.53■□□□□ 0.72
VCL-205ENST00000478896 KRT28Q7Z3Y7 464 aa19.53■□□□□ 0.72
VCL-205ENST00000478896 TNS3Q68CZ2 1445 aa19.52■□□□□ 0.72
VCL-205ENST00000478896 PRAM1Q96QH2 718 aa19.52■□□□□ 0.72
VCL-205ENST00000478896 PHF8Q9UPP1 1060 aa19.52■□□□□ 0.72
VCL-205ENST00000478896 DLC1Q96QB1 1528 aa19.51■□□□□ 0.71
VCL-205ENST00000478896 POGKQ9P215 609 aa19.51■□□□□ 0.71
VCL-205ENST00000478896 PLEKHG5O94827 1062 aa19.5■□□□□ 0.71
VCL-205ENST00000478896 PSME1Q06323 249 aa19.5■□□□□ 0.71
VCL-205ENST00000478896 GJD4Q96KN9 370 aaPredicted RBP19.5■□□□□ 0.71
VCL-205ENST00000478896 ADGRB2O60241 1585 aa19.49■□□□□ 0.71
VCL-205ENST00000478896 SLIT2O94813 1529 aa19.48■□□□□ 0.71
VCL-205ENST00000478896 LMOD2Q6P5Q4 547 aa19.48■□□□□ 0.71
VCL-205ENST00000478896 UNC5CLQ8IV45 518 aa19.48■□□□□ 0.71
VCL-205ENST00000478896 ABCA3Q99758 1704 aa19.48■□□□□ 0.71
VCL-205ENST00000478896 PLCH1Q4KWH8 1693 aa19.47■□□□□ 0.71
VCL-205ENST00000478896 ANKARQ7Z5J8 1434 aa19.47■□□□□ 0.71
VCL-205ENST00000478896 ADGRB1O14514 1584 aa19.47■□□□□ 0.71
VCL-205ENST00000478896 GLI3P10071 1580 aa19.46■□□□□ 0.71
VCL-205ENST00000478896 RALGAPBQ86X10 1494 aa19.46■□□□□ 0.71
VCL-205ENST00000478896 SBNO1A3KN83 1393 aa19.45■□□□□ 0.7
VCL-205ENST00000478896 ARHGEF10O15013 1369 aa19.45■□□□□ 0.7
VCL-205ENST00000478896 PMFBP1Q8TBY8 1022 aa19.45■□□□□ 0.7
VCL-205ENST00000478896 TRAK1Q9UPV9 953 aa19.45■□□□□ 0.7
VCL-205ENST00000478896 KDM2AQ9Y2K7 1162 aa19.45■□□□□ 0.7
VCL-205ENST00000478896 CABLES1Q8TDN4 633 aa19.44■□□□□ 0.7
VCL-205ENST00000478896 NWD2Q9ULI1 1742 aa19.44■□□□□ 0.7
VCL-205ENST00000478896 DCAF11Q8TEB1 546 aa19.43■□□□□ 0.7
VCL-205ENST00000478896 HIRIP3Q9BW71 556 aaPredicted RBP19.43■□□□□ 0.7
VCL-205ENST00000478896 EIF3AQ14152 1382 aaKnown RBP19.43■□□□□ 0.7
VCL-205ENST00000478896 CCDC9Q9Y3X0 531 aaKnown RBP19.42■□□□□ 0.7
VCL-205ENST00000478896 MINK1Q8N4C8 1332 aaPredicted RBP19.42■□□□□ 0.7
VCL-205ENST00000478896 TULP4Q9NRJ4 1543 aa19.41■□□□□ 0.7
VCL-205ENST00000478896 BRWD3Q6RI45 1802 aa19.41■□□□□ 0.7
VCL-205ENST00000478896 TRPM3Q9HCF6 1732 aaPredicted RBP19.4■□□□□ 0.7
VCL-205ENST00000478896 CCDC125Q86Z20 511 aa19.4■□□□□ 0.7
VCL-205ENST00000478896 GPRASP1Q5JY77 1395 aa19.4■□□□□ 0.7
VCL-205ENST00000478896 ARHGEF28Q8N1W1 1705 aaKnown RBP19.38■□□□□ 0.69
VCL-205ENST00000478896 ZRANB1Q9UGI0 708 aa19.38■□□□□ 0.69
VCL-205ENST00000478896 ITSN1Q15811 1721 aa19.37■□□□□ 0.69
VCL-205ENST00000478896 ALS2Q96Q42 1657 aa19.37■□□□□ 0.69
VCL-205ENST00000478896 VPS72Q15906 364 aa19.37■□□□□ 0.69
VCL-205ENST00000478896 STAC3Q96MF2 364 aa19.36■□□□□ 0.69
VCL-205ENST00000478896 BLMP54132 1417 aaPredicted RBP19.35■□□□□ 0.69
VCL-205ENST00000478896 PRR36Q9H6K5 1346 aa19.35■□□□□ 0.69
VCL-205ENST00000478896 NRAPQ86VF7 1730 aa19.35■□□□□ 0.69
VCL-205ENST00000478896 A0A0G2JS52 829 aa19.35■□□□□ 0.69
VCL-205ENST00000478896 WASLO00401 505 aaPredicted RBP19.35■□□□□ 0.69
VCL-205ENST00000478896 MYT1Q01538 1121 aa19.35■□□□□ 0.69
VCL-205ENST00000478896 SEPT12Q8IYM1 358 aa19.35■□□□□ 0.69
VCL-205ENST00000478896 NGDNQ8NEJ9 315 aaKnown RBP19.34■□□□□ 0.69
VCL-205ENST00000478896 COL14A1Q05707 1796 aaKnown RBP19.34■□□□□ 0.69
VCL-205ENST00000478896 SF3B2Q13435 895 aaKnown RBP19.33■□□□□ 0.68
VCL-205ENST00000478896 FAM83GA6ND36 823 aa19.32■□□□□ 0.68
VCL-205ENST00000478896 PAK3O75914 559 aaPredicted RBP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms