RNA–Protein interactions for RNA: ENST00000477939.1

TRA2B-211, Transcript of transformer 2 beta homolog, humanhuman

TSL 2

Gene TRA2B, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-211ENST00000477939 PTCH1Q13635 1447 aa8.38□□□□□ -1.07
TRA2B-211ENST00000477939 PRAG1Q86YV5 1406 aa8.38□□□□□ -1.07
TRA2B-211ENST00000477939 SPATA31A6Q5VVP1 1343 aa8.38□□□□□ -1.07
TRA2B-211ENST00000477939 SETD5Q9C0A6 1442 aa8.37□□□□□ -1.07
TRA2B-211ENST00000477939 LAMC1P11047 1609 aa8.37□□□□□ -1.07
TRA2B-211ENST00000477939 IFT172Q9UG01 1749 aa8.37□□□□□ -1.07
TRA2B-211ENST00000477939 ROBO2Q9HCK4 1378 aa8.36□□□□□ -1.07
TRA2B-211ENST00000477939 CLSPNQ9HAW4 1339 aa8.35□□□□□ -1.07
TRA2B-211ENST00000477939 C1orf167Q5SNV9 1468 aa8.35□□□□□ -1.07
TRA2B-211ENST00000477939 TRIM52Q96A61 297 aa8.35□□□□□ -1.07
TRA2B-211ENST00000477939 SLC4A1APQ9BWU0 796 aaKnown RBP8.35□□□□□ -1.07
TRA2B-211ENST00000477939 MEX3CQ5U5Q3 659 aaKnown RBP8.34□□□□□ -1.07
TRA2B-211ENST00000477939 DDX17Q92841 729 aaKnown RBP8.34□□□□□ -1.07
TRA2B-211ENST00000477939 CDC42BPGQ6DT37 1551 aa8.34□□□□□ -1.07
TRA2B-211ENST00000477939 PNPLA6Q8IY17 1366 aa8.34□□□□□ -1.07
TRA2B-211ENST00000477939 EP400Q96L91 3159 aa8.33□□□□□ -1.08
TRA2B-211ENST00000477939 VGFO15240 615 aaPredicted RBP8.33□□□□□ -1.08
TRA2B-211ENST00000477939 FOXD1Q16676 465 aa8.33□□□□□ -1.08
TRA2B-211ENST00000477939 SRCAPQ6ZRS2 3230 aa8.33□□□□□ -1.08
TRA2B-211ENST00000477939 SPATA31E1Q6ZUB1 1445 aa8.33□□□□□ -1.08
TRA2B-211ENST00000477939 KNDC1Q76NI1 1749 aa8.33□□□□□ -1.08
TRA2B-211ENST00000477939 GTF3C3Q9Y5Q9 886 aa8.33□□□□□ -1.08
TRA2B-211ENST00000477939 RPGRIP1LQ68CZ1 1315 aa8.32□□□□□ -1.08
TRA2B-211ENST00000477939 CCDC144AA2RUR9 1427 aa8.32□□□□□ -1.08
TRA2B-211ENST00000477939 NUTM2BA6NNL0 878 aaPredicted RBP8.32□□□□□ -1.08
TRA2B-211ENST00000477939 NUTM2EB1AL46 878 aaPredicted RBP8.32□□□□□ -1.08
TRA2B-211ENST00000477939 BRD2P25440 801 aaKnown RBP8.32□□□□□ -1.08
TRA2B-211ENST00000477939 ZNF772Q68DY9 489 aaPredicted RBP8.32□□□□□ -1.08
TRA2B-211ENST00000477939 NUTM2AQ8IVF1 878 aaPredicted RBP8.32□□□□□ -1.08
TRA2B-211ENST00000477939 TECPR2O15040 1411 aa8.31□□□□□ -1.08
TRA2B-211ENST00000477939 COL22A1Q8NFW1 1626 aaPredicted RBP8.31□□□□□ -1.08
TRA2B-211ENST00000477939 CDK12Q9NYV4 1490 aaPredicted RBP8.31□□□□□ -1.08
TRA2B-211ENST00000477939 AFF2P51816 1311 aa8.3□□□□□ -1.08
TRA2B-211ENST00000477939 ADGRF5Q8IZF2 1346 aa8.3□□□□□ -1.08
TRA2B-211ENST00000477939 PIK3C2GO75747 1445 aa8.3□□□□□ -1.08
TRA2B-211ENST00000477939 HMGB1P09429 215 aaKnown RBP8.3□□□□□ -1.08
TRA2B-211ENST00000477939 LRRC59Q96AG4 307 aaKnown RBP8.3□□□□□ -1.08
TRA2B-211ENST00000477939 ORAI2Q96SN7 254 aa8.3□□□□□ -1.08
TRA2B-211ENST00000477939 ANO8Q9HCE9 1232 aaPredicted RBP8.3□□□□□ -1.08
TRA2B-211ENST00000477939 SOS2Q07890 1332 aaPredicted RBP8.29□□□□□ -1.08
TRA2B-211ENST00000477939 RGS12O14924 1447 aa8.29□□□□□ -1.08
TRA2B-211ENST00000477939 PXDNQ92626 1479 aa8.29□□□□□ -1.08
TRA2B-211ENST00000477939 FMN2Q9NZ56 1722 aa8.29□□□□□ -1.08
TRA2B-211ENST00000477939 MYOM2P54296 1465 aa8.28□□□□□ -1.08
TRA2B-211ENST00000477939 LRPPRCP42704 1394 aaKnown RBP8.28□□□□□ -1.08
TRA2B-211ENST00000477939 ANKRD30BQ9BXX2 1392 aa8.28□□□□□ -1.08
TRA2B-211ENST00000477939 TPRNQ4KMQ1 711 aa8.28□□□□□ -1.08
TRA2B-211ENST00000477939 C8orf37Q96NL8 207 aa8.28□□□□□ -1.08
TRA2B-211ENST00000477939 MPHOSPH9Q99550 1183 aa8.28□□□□□ -1.08
TRA2B-211ENST00000477939 NRXN1Q9ULB1 1477 aa8.27□□□□□ -1.09
TRA2B-211ENST00000477939 PLEKHH1Q9ULM0 1364 aa8.27□□□□□ -1.09
TRA2B-211ENST00000477939 MARF1Q9Y4F3 1742 aaKnown RBP8.27□□□□□ -1.09
TRA2B-211ENST00000477939 RXRBP28702 533 aa8.27□□□□□ -1.09
TRA2B-211ENST00000477939 FGD1P98174 961 aa8.27□□□□□ -1.09
TRA2B-211ENST00000477939 RGL3Q3MIN7 710 aa8.27□□□□□ -1.09
TRA2B-211ENST00000477939 UPF1Q92900 1129 aaKnown RBP eCLIP8.27□□□□□ -1.09
TRA2B-211ENST00000477939 ABCC11Q96J66 1382 aa8.26□□□□□ -1.09
TRA2B-211ENST00000477939 ADAMTS2O95450 1211 aa8.26□□□□□ -1.09
TRA2B-211ENST00000477939 KIF1AQ12756 1690 aa8.26□□□□□ -1.09
TRA2B-211ENST00000477939 YTHDC2Q9H6S0 1430 aaKnown RBP8.26□□□□□ -1.09
TRA2B-211ENST00000477939 RGPD8O14715 1765 aaPredicted RBP8.25□□□□□ -1.09
TRA2B-211ENST00000477939 CDK11BP21127 795 aaKnown RBP8.25□□□□□ -1.09
TRA2B-211ENST00000477939 KCNA4P22459 653 aa8.25□□□□□ -1.09
TRA2B-211ENST00000477939 TMEM132EQ6IEE7 984 aa8.25□□□□□ -1.09
TRA2B-211ENST00000477939 WAPLQ7Z5K2 1190 aa8.25□□□□□ -1.09
TRA2B-211ENST00000477939 STK26Q9P289 416 aa8.25□□□□□ -1.09
TRA2B-211ENST00000477939 NPHP3Q7Z494 1330 aa8.25□□□□□ -1.09
TRA2B-211ENST00000477939 HSP90B1P14625 803 aaKnown RBP8.24□□□□□ -1.09
TRA2B-211ENST00000477939 RBM6P78332 1123 aaKnown RBP8.24□□□□□ -1.09
TRA2B-211ENST00000477939 XPCQ01831 940 aaPredicted RBP8.24□□□□□ -1.09
TRA2B-211ENST00000477939 ESCO1Q5FWF5 840 aa8.24□□□□□ -1.09
TRA2B-211ENST00000477939 RAB3GAP2Q9H2M9 1393 aa8.23□□□□□ -1.09
TRA2B-211ENST00000477939 ABCA3Q99758 1704 aa8.23□□□□□ -1.09
TRA2B-211ENST00000477939 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.23□□□□□ -1.09
TRA2B-211ENST00000477939 ADGRB1O14514 1584 aa8.23□□□□□ -1.09
TRA2B-211ENST00000477939 ATRNO75882 1429 aa8.23□□□□□ -1.09
TRA2B-211ENST00000477939 USP32Q8NFA0 1604 aa8.23□□□□□ -1.09
TRA2B-211ENST00000477939 NUTM2FA1L443 756 aa8.23□□□□□ -1.09
TRA2B-211ENST00000477939 FOXO3O43524 673 aa8.23□□□□□ -1.09
TRA2B-211ENST00000477939 NGLY1Q96IV0 654 aa8.23□□□□□ -1.09
TRA2B-211ENST00000477939 QTRT2Q9H974 415 aaKnown RBP8.23□□□□□ -1.09
TRA2B-211ENST00000477939 ADGRB2O60241 1585 aa8.22□□□□□ -1.09
TRA2B-211ENST00000477939 BCL9LQ86UU0 1499 aa8.22□□□□□ -1.09
TRA2B-211ENST00000477939 FNBP4Q8N3X1 1017 aaPredicted RBP8.22□□□□□ -1.09
TRA2B-211ENST00000477939 DLC1Q96QB1 1528 aa8.22□□□□□ -1.09
TRA2B-211ENST00000477939 C14orf93Q9H972 538 aaKnown RBP8.21□□□□□ -1.1
TRA2B-211ENST00000477939 USP21Q9UK80 565 aa8.21□□□□□ -1.1
TRA2B-211ENST00000477939 GLI3P10071 1580 aa8.2□□□□□ -1.1
TRA2B-211ENST00000477939 CFAP70Q5T0N1 1121 aa8.2□□□□□ -1.1
TRA2B-211ENST00000477939 TRPC5Q9UL62 973 aaPredicted RBP8.2□□□□□ -1.1
TRA2B-211ENST00000477939 SPATA31A3Q5VYP0 1347 aa8.2□□□□□ -1.1
TRA2B-211ENST00000477939 PLCH1Q4KWH8 1693 aa8.2□□□□□ -1.1
TRA2B-211ENST00000477939 TNS3Q68CZ2 1445 aa8.2□□□□□ -1.1
TRA2B-211ENST00000477939 SLIT2O94813 1529 aa8.19□□□□□ -1.1
TRA2B-211ENST00000477939 CNKSR2Q8WXI2 1034 aa8.19□□□□□ -1.1
TRA2B-211ENST00000477939 SIRT1Q96EB6 747 aa8.19□□□□□ -1.1
TRA2B-211ENST00000477939 TRPM3Q9HCF6 1732 aaPredicted RBP8.19□□□□□ -1.1
TRA2B-211ENST00000477939 DHX57Q6P158 1386 aaKnown RBP8.19□□□□□ -1.1
TRA2B-211ENST00000477939 ATAD2Q6PL18 1390 aa8.19□□□□□ -1.1
TRA2B-211ENST00000477939 ARHGEF28Q8N1W1 1705 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms