RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 GTF2F1P35269 517 aaKnown RBP eCLIP17.18■□□□□ 0.34
HDAC1-206ENST00000476391 HMGN5P82970 282 aaKnown RBP17.18■□□□□ 0.34
HDAC1-206ENST00000476391 DNMBPQ6XZF7 1577 aa17.17■□□□□ 0.34
HDAC1-206ENST00000476391 APAF1O14727 1248 aa17.17■□□□□ 0.34
HDAC1-206ENST00000476391 TMF1P82094 1093 aa17.17■□□□□ 0.34
HDAC1-206ENST00000476391 ZNF644Q9H582 1327 aaPredicted RBP17.17■□□□□ 0.34
HDAC1-206ENST00000476391 ITSN2Q9NZM3 1697 aa17.17■□□□□ 0.34
HDAC1-206ENST00000476391 CBX1P83916 185 aa17.17■□□□□ 0.34
HDAC1-206ENST00000476391 CROCC2H7BZ55 1655 aa17.16■□□□□ 0.34
HDAC1-206ENST00000476391 ZSCAN23Q3MJ62 389 aa17.16■□□□□ 0.34
HDAC1-206ENST00000476391 RBSNQ9H1K0 784 aa17.16■□□□□ 0.34
HDAC1-206ENST00000476391 WDR62O43379 1518 aa17.16■□□□□ 0.34
HDAC1-206ENST00000476391 BAG4O95429 457 aaKnown RBP17.16■□□□□ 0.34
HDAC1-206ENST00000476391 POLA1P09884 1462 aaPredicted RBP17.15■□□□□ 0.34
HDAC1-206ENST00000476391 ZNF710Q8N1W2 664 aa17.15■□□□□ 0.34
HDAC1-206ENST00000476391 KNSTRNQ9Y448 316 aa17.15■□□□□ 0.34
HDAC1-206ENST00000476391 ANKRD50Q9ULJ7 1429 aa17.14■□□□□ 0.33
HDAC1-206ENST00000476391 KIAA2012Q0VF49 1180 aa17.13■□□□□ 0.33
HDAC1-206ENST00000476391 CCDC146Q8IYE0 955 aa17.13■□□□□ 0.33
HDAC1-206ENST00000476391 K7ELQ4 463 aaPredicted RBP17.13■□□□□ 0.33
HDAC1-206ENST00000476391 SSFA2P28290 1259 aa17.13■□□□□ 0.33
HDAC1-206ENST00000476391 ABCC10Q5T3U5 1492 aa17.12■□□□□ 0.33
HDAC1-206ENST00000476391 AMER1Q5JTC6 1135 aaPredicted RBP17.12■□□□□ 0.33
HDAC1-206ENST00000476391 NUP155O75694 1391 aa17.12■□□□□ 0.33
HDAC1-206ENST00000476391 MAGI2Q86UL8 1455 aa17.12■□□□□ 0.33
HDAC1-206ENST00000476391 RARSP54136 660 aaKnown RBP17.11■□□□□ 0.33
HDAC1-206ENST00000476391 CAVIN1Q6NZI2 390 aaKnown RBP17.11■□□□□ 0.33
HDAC1-206ENST00000476391 WDR7Q9Y4E6 1490 aa17.11■□□□□ 0.33
HDAC1-206ENST00000476391 PRIM1P49642 420 aaKnown RBP17.11■□□□□ 0.33
HDAC1-206ENST00000476391 ATP2B3Q16720 1220 aa17.11■□□□□ 0.33
HDAC1-206ENST00000476391 RLBP1P12271 317 aa17.1■□□□□ 0.33
HDAC1-206ENST00000476391 PDS5BQ9NTI5 1447 aa17.1■□□□□ 0.33
HDAC1-206ENST00000476391 DMRT2Q9Y5R5 561 aa17.1■□□□□ 0.33
HDAC1-206ENST00000476391 NPC1L1Q9UHC9 1359 aa17.1■□□□□ 0.33
HDAC1-206ENST00000476391 NBPF1Q3BBV0 1214 aa17.09■□□□□ 0.33
HDAC1-206ENST00000476391 ASXL1Q8IXJ9 1541 aa17.09■□□□□ 0.33
HDAC1-206ENST00000476391 GRIN2AQ12879 1464 aa17.08■□□□□ 0.33
HDAC1-206ENST00000476391 EIF2AK4Q9P2K8 1649 aaKnown RBP17.08■□□□□ 0.33
HDAC1-206ENST00000476391 KIF3AQ9Y496 699 aa17.08■□□□□ 0.33
HDAC1-206ENST00000476391 HDAC1Q13547 482 aaPredicted RBP17.08■□□□□ 0.32
HDAC1-206ENST00000476391 DNTTIP2Q5QJE6 756 aaKnown RBP17.08■□□□□ 0.32
HDAC1-206ENST00000476391 KIF2CQ99661 725 aa17.08■□□□□ 0.32
HDAC1-206ENST00000476391 LMBRD1Q9NUN5 540 aa17.08■□□□□ 0.32
HDAC1-206ENST00000476391 PTPRGP23470 1445 aa17.07■□□□□ 0.32
HDAC1-206ENST00000476391 NUCB2P80303 420 aa17.07■□□□□ 0.32
HDAC1-206ENST00000476391 MVPQ14764 893 aaKnown RBP17.07■□□□□ 0.32
HDAC1-206ENST00000476391 LRSAM1Q6UWE0 723 aa17.07■□□□□ 0.32
HDAC1-206ENST00000476391 WWC1Q8IX03 1113 aa17.07■□□□□ 0.32
HDAC1-206ENST00000476391 TOPBP1Q92547 1522 aa17.06■□□□□ 0.32
HDAC1-206ENST00000476391 SYNMO15061 1565 aa17.06■□□□□ 0.32
HDAC1-206ENST00000476391 CDK11BP21127 795 aaKnown RBP17.06■□□□□ 0.32
HDAC1-206ENST00000476391 ZNF830Q96NB3 372 aaPredicted RBP17.06■□□□□ 0.32
HDAC1-206ENST00000476391 MCTP1Q6DN14 999 aa17.05■□□□□ 0.32
HDAC1-206ENST00000476391 PDCL2Q8N4E4 241 aa17.04■□□□□ 0.32
HDAC1-206ENST00000476391 GAS2L2Q8NHY3 880 aa17.04■□□□□ 0.32
HDAC1-206ENST00000476391 PIBF1Q8WXW3 757 aa17.04■□□□□ 0.32
HDAC1-206ENST00000476391 CD2BP2O95400 341 aaKnown RBP17.04■□□□□ 0.32
HDAC1-206ENST00000476391 FEZ1Q99689 392 aa17.04■□□□□ 0.32
HDAC1-206ENST00000476391 FOXD4L1Q9NU39 408 aa17.04■□□□□ 0.32
HDAC1-206ENST00000476391 VGFO15240 615 aaPredicted RBP17.03■□□□□ 0.32
HDAC1-206ENST00000476391 CGNQ9P2M7 1197 aaKnown RBP17.03■□□□□ 0.32
HDAC1-206ENST00000476391 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.03■□□□□ 0.326e-8■■□□□ 14.1
HDAC1-206ENST00000476391 NUP160Q12769 1436 aa17.03■□□□□ 0.32
HDAC1-206ENST00000476391 AK9Q5TCS8 1911 aa17.03■□□□□ 0.32
HDAC1-206ENST00000476391 KIF16BQ96L93 1317 aa17.02■□□□□ 0.32
HDAC1-206ENST00000476391 CYP2E1P05181 493 aaPredicted RBP17.02■□□□□ 0.32
HDAC1-206ENST00000476391 SLC20A2Q08357 652 aa17.02■□□□□ 0.32
HDAC1-206ENST00000476391 RSPH4AQ5TD94 716 aa17.02■□□□□ 0.32
HDAC1-206ENST00000476391 PTMAP06454 111 aaKnown RBP17.02■□□□□ 0.32
HDAC1-206ENST00000476391 TNNQ9UQP3 1299 aa17.02■□□□□ 0.32
HDAC1-206ENST00000476391 URB2Q14146 1524 aaKnown RBP17.02■□□□□ 0.31
HDAC1-206ENST00000476391 BCL2L12Q9HB09 334 aa17.01■□□□□ 0.31
HDAC1-206ENST00000476391 VGLL3A8MV65 326 aa17.01■□□□□ 0.31
HDAC1-206ENST00000476391 NOLC1Q14978 699 aaKnown RBP eCLIP17■□□□□ 0.311e-6■□□□□ 8.1
HDAC1-206ENST00000476391 TSC1Q92574 1164 aa17■□□□□ 0.31
HDAC1-206ENST00000476391 JARID2Q92833 1246 aaPredicted RBP17■□□□□ 0.31
HDAC1-206ENST00000476391 CFDP1Q9UEE9 299 aaPredicted RBP17■□□□□ 0.31
HDAC1-206ENST00000476391 GABPB1Q06547 395 aaPredicted RBP17■□□□□ 0.31
HDAC1-206ENST00000476391 A2MP01023 1474 aa16.99■□□□□ 0.31
HDAC1-206ENST00000476391 CCDC141Q6ZP82 1450 aa16.99■□□□□ 0.31
HDAC1-206ENST00000476391 SHANK2Q9UPX8 1470 aa16.99■□□□□ 0.31
HDAC1-206ENST00000476391 ZNF771Q7L3S4 317 aaPredicted RBP16.99■□□□□ 0.31
HDAC1-206ENST00000476391 FKBP5Q13451 457 aaPredicted RBP16.99■□□□□ 0.31
HDAC1-206ENST00000476391 CDCA8Q53HL2 280 aa16.99■□□□□ 0.31
HDAC1-206ENST00000476391 ANKRD7Q92527 254 aa16.99■□□□□ 0.31
HDAC1-206ENST00000476391 KANK1Q14678 1352 aa16.99■□□□□ 0.31
HDAC1-206ENST00000476391 SPDYE4A6NLX3 237 aa16.98■□□□□ 0.31
HDAC1-206ENST00000476391 BMP2KLQ5H9B9 411 aa16.98■□□□□ 0.31
HDAC1-206ENST00000476391 FTSJ3Q8IY81 847 aaKnown RBP16.98■□□□□ 0.31
HDAC1-206ENST00000476391 GPT2Q8TD30 523 aa16.98■□□□□ 0.31
HDAC1-206ENST00000476391 RNF17Q9BXT8 1623 aaKnown RBP16.98■□□□□ 0.31
HDAC1-206ENST00000476391 ZKSCAN2Q63HK3 967 aa16.98■□□□□ 0.31
HDAC1-206ENST00000476391 SPTLC3Q9NUV7 552 aa16.98■□□□□ 0.31
HDAC1-206ENST00000476391 ADCY10Q96PN6 1610 aa16.98■□□□□ 0.31
HDAC1-206ENST00000476391 IQGAP2Q13576 1575 aa16.97■□□□□ 0.31
HDAC1-206ENST00000476391 WDR63Q8IWG1 891 aa16.97■□□□□ 0.31
HDAC1-206ENST00000476391 DZIP1LQ8IYY4 767 aaKnown RBP16.97■□□□□ 0.31
HDAC1-206ENST00000476391 OGFRQ9NZT2 677 aa16.97■□□□□ 0.31
HDAC1-206ENST00000476391 SYCE3A1L190 88 aa16.96■□□□□ 0.31
HDAC1-206ENST00000476391 CWC22Q9HCG8 908 aaKnown RBP16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms