RNA–Protein interactions for RNA: ENST00000476387.1

COL1A1-205, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 600 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-205ENST00000476387 NUTM2AQ8IVF1 878 aaPredicted RBP23.82■■□□□ 1.4
COL1A1-205ENST00000476387 ORAI2Q96SN7 254 aa23.82■■□□□ 1.4
COL1A1-205ENST00000476387 KNDC1Q76NI1 1749 aa23.81■■□□□ 1.4
COL1A1-205ENST00000476387 MYOM2P54296 1465 aa23.81■■□□□ 1.4
COL1A1-205ENST00000476387 NRXN1Q9ULB1 1477 aa23.81■■□□□ 1.4
COL1A1-205ENST00000476387 STK26Q9P289 416 aa23.81■■□□□ 1.4
COL1A1-205ENST00000476387 SOS2Q07890 1332 aaPredicted RBP23.81■■□□□ 1.4
COL1A1-205ENST00000476387 YTHDC2Q9H6S0 1430 aaKnown RBP23.79■■□□□ 1.4
COL1A1-205ENST00000476387 TMEM132EQ6IEE7 984 aa23.79■■□□□ 1.4
COL1A1-205ENST00000476387 C14orf93Q9H972 538 aaKnown RBP23.79■■□□□ 1.4
COL1A1-205ENST00000476387 WAPLQ7Z5K2 1190 aa23.77■■□□□ 1.4
COL1A1-205ENST00000476387 SIRT1Q96EB6 747 aa23.77■■□□□ 1.4
COL1A1-205ENST00000476387 ESCO1Q5FWF5 840 aa23.74■■□□□ 1.39
COL1A1-205ENST00000476387 AFF2P51816 1311 aa23.74■■□□□ 1.39
COL1A1-205ENST00000476387 NPHP3Q7Z494 1330 aa23.74■■□□□ 1.39
COL1A1-205ENST00000476387 PLEKHH1Q9ULM0 1364 aa23.74■■□□□ 1.39
COL1A1-205ENST00000476387 DHX57Q6P158 1386 aaKnown RBP23.73■■□□□ 1.39
COL1A1-205ENST00000476387 CFAP70Q5T0N1 1121 aa23.71■■□□□ 1.39
COL1A1-205ENST00000476387 RXRBP28702 533 aa23.7■■□□□ 1.38
COL1A1-205ENST00000476387 PXDNQ92626 1479 aa23.69■■□□□ 1.38
COL1A1-205ENST00000476387 CDK12Q9NYV4 1490 aaPredicted RBP23.69■■□□□ 1.38
COL1A1-205ENST00000476387 C8orf37Q96NL8 207 aa23.69■■□□□ 1.38
COL1A1-205ENST00000476387 COL22A1Q8NFW1 1626 aaPredicted RBP23.68■■□□□ 1.38
COL1A1-205ENST00000476387 FMN2Q9NZ56 1722 aa23.67■■□□□ 1.38
COL1A1-205ENST00000476387 FOXO3O43524 673 aa23.66■■□□□ 1.38
COL1A1-205ENST00000476387 STAC3Q96MF2 364 aa23.66■■□□□ 1.38
COL1A1-205ENST00000476387 DLC1Q96QB1 1528 aa23.65■■□□□ 1.38
COL1A1-205ENST00000476387 NUTM2FA1L443 756 aa23.64■■□□□ 1.37
COL1A1-205ENST00000476387 ADAMTS2O95450 1211 aa23.64■■□□□ 1.37
COL1A1-205ENST00000476387 KIF1AQ12756 1690 aa23.64■■□□□ 1.37
COL1A1-205ENST00000476387 NGLY1Q96IV0 654 aa23.63■■□□□ 1.37
COL1A1-205ENST00000476387 ADGRB1O14514 1584 aa23.62■■□□□ 1.37
COL1A1-205ENST00000476387 PRAM1Q96QH2 718 aa23.62■■□□□ 1.37
COL1A1-205ENST00000476387 QTRT2Q9H974 415 aaKnown RBP23.62■■□□□ 1.37
COL1A1-205ENST00000476387 DCAF11Q8TEB1 546 aa23.61■■□□□ 1.37
COL1A1-205ENST00000476387 RBM6P78332 1123 aaKnown RBP23.6■■□□□ 1.37
COL1A1-205ENST00000476387 XPCQ01831 940 aaPredicted RBP23.6■■□□□ 1.37
COL1A1-205ENST00000476387 FNBP4Q8N3X1 1017 aaPredicted RBP23.58■■□□□ 1.37
COL1A1-205ENST00000476387 POGKQ9P215 609 aa23.58■■□□□ 1.37
COL1A1-205ENST00000476387 KDM2AQ9Y2K7 1162 aa23.58■■□□□ 1.37
COL1A1-205ENST00000476387 ADGRB2O60241 1585 aa23.57■■□□□ 1.36
COL1A1-205ENST00000476387 SAFB2Q14151 953 aaKnown RBP eCLIP23.56■■□□□ 1.36
COL1A1-205ENST00000476387 USP21Q9UK80 565 aa23.56■■□□□ 1.36
COL1A1-205ENST00000476387 PHF8Q9UPP1 1060 aa23.56■■□□□ 1.36
COL1A1-205ENST00000476387 ANKARQ7Z5J8 1434 aa23.56■■□□□ 1.36
COL1A1-205ENST00000476387 SPATA31A3Q5VYP0 1347 aa23.56■■□□□ 1.36
COL1A1-205ENST00000476387 RGS12O14924 1447 aa23.54■■□□□ 1.36
COL1A1-205ENST00000476387 KRT28Q7Z3Y7 464 aa23.54■■□□□ 1.36
COL1A1-205ENST00000476387 UPF1Q92900 1129 aaKnown RBP eCLIP23.54■■□□□ 1.36
COL1A1-205ENST00000476387 TRPC5Q9UL62 973 aaPredicted RBP23.54■■□□□ 1.36
COL1A1-205ENST00000476387 TRAK1Q9UPV9 953 aa23.53■■□□□ 1.36
COL1A1-205ENST00000476387 RGPD8O14715 1765 aaPredicted RBP23.52■■□□□ 1.36
COL1A1-205ENST00000476387 PSME1Q06323 249 aa23.52■■□□□ 1.36
COL1A1-205ENST00000476387 MARF1Q9Y4F3 1742 aaKnown RBP23.51■■□□□ 1.35
COL1A1-205ENST00000476387 EIF3AQ14152 1382 aaKnown RBP23.51■■□□□ 1.35
COL1A1-205ENST00000476387 ATRNO75882 1429 aa23.5■■□□□ 1.35
COL1A1-205ENST00000476387 SBNO1A3KN83 1393 aa23.5■■□□□ 1.35
COL1A1-205ENST00000476387 TNS3Q68CZ2 1445 aa23.5■■□□□ 1.35
COL1A1-205ENST00000476387 TRIM26Q12899 539 aaPredicted RBP23.49■■□□□ 1.35
COL1A1-205ENST00000476387 BCL9LQ86UU0 1499 aa23.48■■□□□ 1.35
COL1A1-205ENST00000476387 USP32Q8NFA0 1604 aa23.48■■□□□ 1.35
COL1A1-205ENST00000476387 ARHGEF10O15013 1369 aa23.46■■□□□ 1.35
COL1A1-205ENST00000476387 MINK1Q8N4C8 1332 aaPredicted RBP23.46■■□□□ 1.35
COL1A1-205ENST00000476387 HIRIP3Q9BW71 556 aaPredicted RBP23.46■■□□□ 1.35
COL1A1-205ENST00000476387 TULP4Q9NRJ4 1543 aa23.45■■□□□ 1.34
COL1A1-205ENST00000476387 WASLO00401 505 aaPredicted RBP23.44■■□□□ 1.34
COL1A1-205ENST00000476387 KIAA1210Q9ULL0 1709 aa23.43■■□□□ 1.34
COL1A1-205ENST00000476387 SLIT2O94813 1529 aa23.43■■□□□ 1.34
COL1A1-205ENST00000476387 ARHGEF28Q8N1W1 1705 aaKnown RBP23.42■■□□□ 1.34
COL1A1-205ENST00000476387 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.42■■□□□ 1.34
COL1A1-205ENST00000476387 PMFBP1Q8TBY8 1022 aa23.42■■□□□ 1.34
COL1A1-205ENST00000476387 PRR36Q9H6K5 1346 aa23.41■■□□□ 1.34
COL1A1-205ENST00000476387 UNC5CLQ8IV45 518 aa23.4■■□□□ 1.34
COL1A1-205ENST00000476387 GPRASP1Q5JY77 1395 aa23.4■■□□□ 1.34
COL1A1-205ENST00000476387 ATAD2Q6PL18 1390 aa23.4■■□□□ 1.34
COL1A1-205ENST00000476387 HAP1P54257 671 aaPredicted RBP23.39■■□□□ 1.33
COL1A1-205ENST00000476387 GJD4Q96KN9 370 aaPredicted RBP23.39■■□□□ 1.33
COL1A1-205ENST00000476387 TRPM3Q9HCF6 1732 aaPredicted RBP23.37■■□□□ 1.33
COL1A1-205ENST00000476387 LMOD2Q6P5Q4 547 aa23.37■■□□□ 1.33
COL1A1-205ENST00000476387 CABLES1Q8TDN4 633 aa23.37■■□□□ 1.33
COL1A1-205ENST00000476387 ABCA3Q99758 1704 aa23.36■■□□□ 1.33
COL1A1-205ENST00000476387 ATP7BP35670 1465 aa23.34■■□□□ 1.33
COL1A1-205ENST00000476387 ALS2Q96Q42 1657 aa23.33■■□□□ 1.33
COL1A1-205ENST00000476387 RALGAPBQ86X10 1494 aa23.33■■□□□ 1.33
COL1A1-205ENST00000476387 NGDNQ8NEJ9 315 aaKnown RBP23.33■■□□□ 1.33
COL1A1-205ENST00000476387 ITSN1Q15811 1721 aa23.33■■□□□ 1.32
COL1A1-205ENST00000476387 NUDT16Q96DE0 195 aaKnown RBP23.32■■□□□ 1.32
COL1A1-205ENST00000476387 SIN3AQ96ST3 1273 aa23.32■■□□□ 1.32
COL1A1-205ENST00000476387 NWD2Q9ULI1 1742 aa23.32■■□□□ 1.32
COL1A1-205ENST00000476387 NEUROD1Q13562 356 aa23.31■■□□□ 1.32
COL1A1-205ENST00000476387 GLI3P10071 1580 aa23.31■■□□□ 1.32
COL1A1-205ENST00000476387 PLCH1Q4KWH8 1693 aa23.3■■□□□ 1.32
COL1A1-205ENST00000476387 VPS72Q15906 364 aa23.3■■□□□ 1.32
COL1A1-205ENST00000476387 NBPF1Q3BBV0 1214 aa23.3■■□□□ 1.32
COL1A1-205ENST00000476387 CDK19Q9BWU1 502 aa23.3■■□□□ 1.32
COL1A1-205ENST00000476387 PLEKHG5O94827 1062 aa23.29■■□□□ 1.32
COL1A1-205ENST00000476387 FAM83GA6ND36 823 aa23.28■■□□□ 1.32
COL1A1-205ENST00000476387 L3MBTL2Q969R5 705 aa23.28■■□□□ 1.32
COL1A1-205ENST00000476387 EP400Q96L91 3159 aa23.28■■□□□ 1.32
COL1A1-205ENST00000476387 POLR3AO14802 1390 aaPredicted RBP23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms