RNA–Protein interactions for RNA: ENST00000475240.5

ABCD4-208, Transcript of ATP binding cassette subfamily D member 4, human

TSL 5

Gene ABCD4, Length 546 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-208	ENST00000475240	LAMC1	P11047	1609 aa		28.36	■■■□□ 2.13
ABCD4-208	ENST00000475240	PNPLA6	Q8IY17	1366 aa		28.35	■■■□□ 2.13
ABCD4-208	ENST00000475240	ABCC11	Q96J66	1382 aa		28.35	■■■□□ 2.13
ABCD4-208	ENST00000475240	MYOM2	P54296	1465 aa		28.34	■■■□□ 2.13
ABCD4-208	ENST00000475240	ZNF772	Q68DY9	489 aa	Predicted RBP	28.34	■■■□□ 2.13
ABCD4-208	ENST00000475240	YTHDC2	Q9H6S0	1430 aa	Known RBP	28.33	■■■□□ 2.13
ABCD4-208	ENST00000475240	WAPL	Q7Z5K2	1190 aa		28.32	■■■□□ 2.12
ABCD4-208	ENST00000475240	NRXN1	Q9ULB1	1477 aa		28.32	■■■□□ 2.12
ABCD4-208	ENST00000475240	PLEKHH1	Q9ULM0	1364 aa		28.29	■■■□□ 2.12
ABCD4-208	ENST00000475240	SOS2	Q07890	1332 aa	Predicted RBP	28.29	■■■□□ 2.12
ABCD4-208	ENST00000475240	C14orf93	Q9H972	538 aa	Known RBP	28.28	■■■□□ 2.12
ABCD4-208	ENST00000475240	ESCO1	Q5FWF5	840 aa		28.27	■■■□□ 2.12
ABCD4-208	ENST00000475240	CFAP70	Q5T0N1	1121 aa		28.25	■■■□□ 2.11
ABCD4-208	ENST00000475240	AFF2	P51816	1311 aa		28.24	■■■□□ 2.11
ABCD4-208	ENST00000475240	NPHP3	Q7Z494	1330 aa		28.24	■■■□□ 2.11
ABCD4-208	ENST00000475240	DHX57	Q6P158	1386 aa	Known RBP	28.24	■■■□□ 2.11
ABCD4-208	ENST00000475240	HRC	P23327	699 aa		28.23	■■■□□ 2.11
ABCD4-208	ENST00000475240	NUTM2F	A1L443	756 aa		28.22	■■■□□ 2.11
ABCD4-208	ENST00000475240	C8orf37	Q96NL8	207 aa		28.22	■■■□□ 2.11
ABCD4-208	ENST00000475240	FMN2	Q9NZ56	1722 aa		28.21	■■■□□ 2.11
ABCD4-208	ENST00000475240	SIRT1	Q96EB6	747 aa		28.2	■■■□□ 2.1
ABCD4-208	ENST00000475240	PXDN	Q92626	1479 aa		28.19	■■■□□ 2.1
ABCD4-208	ENST00000475240	ADAMTS2	O95450	1211 aa		28.18	■■■□□ 2.1
ABCD4-208	ENST00000475240	FOXO3	O43524	673 aa		28.17	■■■□□ 2.1
ABCD4-208	ENST00000475240	RXRB	P28702	533 aa		28.17	■■■□□ 2.1
ABCD4-208	ENST00000475240	COL22A1	Q8NFW1	1626 aa	Predicted RBP	28.16	■■■□□ 2.1
ABCD4-208	ENST00000475240	XPC	Q01831	940 aa	Predicted RBP	28.15	■■■□□ 2.1
ABCD4-208	ENST00000475240	DLC1	Q96QB1	1528 aa		28.14	■■■□□ 2.1
ABCD4-208	ENST00000475240	KIF1A	Q12756	1690 aa		28.14	■■■□□ 2.1
ABCD4-208	ENST00000475240	DCAF11	Q8TEB1	546 aa		28.14	■■■□□ 2.1
ABCD4-208	ENST00000475240	PRAM1	Q96QH2	718 aa		28.14	■■■□□ 2.1
ABCD4-208	ENST00000475240	KDM2A	Q9Y2K7	1162 aa		28.14	■■■□□ 2.1
ABCD4-208	ENST00000475240	ADGRB1	O14514	1584 aa		28.13	■■■□□ 2.09
ABCD4-208	ENST00000475240	SAFB2	Q14151	953 aa	Known RBP eCLIP	28.13	■■■□□ 2.09
ABCD4-208	ENST00000475240	NGLY1	Q96IV0	654 aa		28.13	■■■□□ 2.09
ABCD4-208	ENST00000475240	CDK12	Q9NYV4	1490 aa	Predicted RBP	28.11	■■■□□ 2.09
ABCD4-208	ENST00000475240	POGK	Q9P215	609 aa		28.11	■■■□□ 2.09
ABCD4-208	ENST00000475240	STAC3	Q96MF2	364 aa		28.08	■■■□□ 2.09
ABCD4-208	ENST00000475240	QTRT2	Q9H974	415 aa	Known RBP	28.08	■■■□□ 2.09
ABCD4-208	ENST00000475240	TRAK1	Q9UPV9	953 aa		28.06	■■■□□ 2.08
ABCD4-208	ENST00000475240	ADGRB2	O60241	1585 aa		28.05	■■■□□ 2.08
ABCD4-208	ENST00000475240	RBM6	P78332	1123 aa	Known RBP	28.05	■■■□□ 2.08
ABCD4-208	ENST00000475240	PHF8	Q9UPP1	1060 aa		28.04	■■■□□ 2.08
ABCD4-208	ENST00000475240	RGPD8	O14715	1765 aa	Predicted RBP	28.04	■■■□□ 2.08
ABCD4-208	ENST00000475240	USP21	Q9UK80	565 aa		28.03	■■■□□ 2.08
ABCD4-208	ENST00000475240	SPATA31A3	Q5VYP0	1347 aa		28.02	■■■□□ 2.08
ABCD4-208	ENST00000475240	KRT28	Q7Z3Y7	464 aa		28.02	■■■□□ 2.08
ABCD4-208	ENST00000475240	RGS12	O14924	1447 aa		28.01	■■■□□ 2.08
ABCD4-208	ENST00000475240	ANKAR	Q7Z5J8	1434 aa		28.01	■■■□□ 2.07
ABCD4-208	ENST00000475240	FNBP4	Q8N3X1	1017 aa	Predicted RBP	28	■■■□□ 2.07
ABCD4-208	ENST00000475240	MARF1	Q9Y4F3	1742 aa	Known RBP	27.99	■■■□□ 2.07
ABCD4-208	ENST00000475240	MINK1	Q8N4C8	1332 aa	Predicted RBP	27.98	■■■□□ 2.07
ABCD4-208	ENST00000475240	HIRIP3	Q9BW71	556 aa	Predicted RBP	27.98	■■■□□ 2.07
ABCD4-208	ENST00000475240	TRPC5	Q9UL62	973 aa	Predicted RBP	27.98	■■■□□ 2.07
ABCD4-208	ENST00000475240	USP32	Q8NFA0	1604 aa		27.98	■■■□□ 2.07
ABCD4-208	ENST00000475240	TNS3	Q68CZ2	1445 aa		27.98	■■■□□ 2.07
ABCD4-208	ENST00000475240	PSME1	Q06323	249 aa		27.97	■■■□□ 2.07
ABCD4-208	ENST00000475240	UPF1	Q92900	1129 aa	Known RBP eCLIP	27.97	■■■□□ 2.07
ABCD4-208	ENST00000475240	EIF3A	Q14152	1382 aa	Known RBP	27.97	■■■□□ 2.07
ABCD4-208	ENST00000475240	ATRN	O75882	1429 aa		27.94	■■■□□ 2.06
ABCD4-208	ENST00000475240	PMFBP1	Q8TBY8	1022 aa		27.93	■■■□□ 2.06
ABCD4-208	ENST00000475240	TULP4	Q9NRJ4	1543 aa		27.92	■■■□□ 2.06
ABCD4-208	ENST00000475240	ARHGEF28	Q8N1W1	1705 aa	Known RBP	27.92	■■■□□ 2.06
ABCD4-208	ENST00000475240	SBNO1	A3KN83	1393 aa		27.92	■■■□□ 2.06
ABCD4-208	ENST00000475240	BCL9L	Q86UU0	1499 aa		27.91	■■■□□ 2.06
ABCD4-208	ENST00000475240	HAP1	P54257	671 aa	Predicted RBP	27.91	■■■□□ 2.06
ABCD4-208	ENST00000475240	WASL	O00401	505 aa	Predicted RBP	27.9	■■■□□ 2.06
ABCD4-208	ENST00000475240	LMOD2	Q6P5Q4	547 aa		27.9	■■■□□ 2.06
ABCD4-208	ENST00000475240	ARHGEF10	O15013	1369 aa		27.89	■■■□□ 2.06
ABCD4-208	ENST00000475240	PRR36	Q9H6K5	1346 aa		27.89	■■■□□ 2.05
ABCD4-208	ENST00000475240	KIAA1210	Q9ULL0	1709 aa		27.87	■■■□□ 2.05
ABCD4-208	ENST00000475240	PLEKHG5	O94827	1062 aa		27.87	■■■□□ 2.05
ABCD4-208	ENST00000475240	GPRASP1	Q5JY77	1395 aa		27.86	■■■□□ 2.05
ABCD4-208	ENST00000475240	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	27.85	■■■□□ 2.05
ABCD4-208	ENST00000475240	CABLES1	Q8TDN4	633 aa		27.85	■■■□□ 2.05
ABCD4-208	ENST00000475240	SLIT2	O94813	1529 aa		27.84	■■■□□ 2.05
ABCD4-208	ENST00000475240	ABCA3	Q99758	1704 aa		27.84	■■■□□ 2.05
ABCD4-208	ENST00000475240	TRPM3	Q9HCF6	1732 aa	Predicted RBP	27.83	■■■□□ 2.05
ABCD4-208	ENST00000475240	ATAD2	Q6PL18	1390 aa		27.82	■■■□□ 2.04
ABCD4-208	ENST00000475240	UNC5CL	Q8IV45	518 aa		27.81	■■■□□ 2.04
ABCD4-208	ENST00000475240	ATP7B	P35670	1465 aa		27.81	■■■□□ 2.04
ABCD4-208	ENST00000475240	ITSN1	Q15811	1721 aa		27.81	■■■□□ 2.04
ABCD4-208	ENST00000475240	NGDN	Q8NEJ9	315 aa	Known RBP	27.8	■■■□□ 2.04
ABCD4-208	ENST00000475240	GJD4	Q96KN9	370 aa	Predicted RBP	27.8	■■■□□ 2.04
ABCD4-208	ENST00000475240	ALS2	Q96Q42	1657 aa		27.78	■■■□□ 2.04
ABCD4-208	ENST00000475240	NBPF1	Q3BBV0	1214 aa		27.77	■■■□□ 2.04
ABCD4-208	ENST00000475240	NUDT16	Q96DE0	195 aa	Known RBP	27.77	■■■□□ 2.04
ABCD4-208	ENST00000475240	PLCH1	Q4KWH8	1693 aa		27.77	■■■□□ 2.04
ABCD4-208	ENST00000475240	RALGAPB	Q86X10	1494 aa		27.76	■■■□□ 2.04
ABCD4-208	ENST00000475240	CDK19	Q9BWU1	502 aa		27.75	■■■□□ 2.03
ABCD4-208	ENST00000475240	GLI3	P10071	1580 aa		27.74	■■■□□ 2.03
ABCD4-208	ENST00000475240	NWD2	Q9ULI1	1742 aa		27.74	■■■□□ 2.03
ABCD4-208	ENST00000475240	PAK3	O75914	559 aa	Predicted RBP	27.73	■■■□□ 2.03
ABCD4-208	ENST00000475240	L3MBTL2	Q969R5	705 aa		27.71	■■■□□ 2.03
ABCD4-208	ENST00000475240	TOPAZ1	Q8N9V7	1692 aa		27.71	■■■□□ 2.03
ABCD4-208	ENST00000475240	EP400	Q96L91	3159 aa		27.7	■■■□□ 2.02
ABCD4-208	ENST00000475240	VPS72	Q15906	364 aa		27.69	■■■□□ 2.02
ABCD4-208	ENST00000475240	CENPJ	Q9HC77	1338 aa	Predicted RBP	27.68	■■■□□ 2.02
ABCD4-208	ENST00000475240	FAM83G	A6ND36	823 aa		27.68	■■■□□ 2.02
ABCD4-208	ENST00000475240	SIN3A	Q96ST3	1273 aa		27.68	■■■□□ 2.02

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms