RNA–Protein interactions for RNA: ENST00000472282.5

SMC4-213, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 667 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-213ENST00000472282 PCDHB13Q9Y5F0 798 aa13.87□□□□□ -0.19
SMC4-213ENST00000472282 PIP4K2BP78356 416 aa13.86□□□□□ -0.19
SMC4-213ENST00000472282 DISP3Q9P2K9 1392 aa13.85□□□□□ -0.19
SMC4-213ENST00000472282 SPHKAPQ2M3C7 1700 aa13.85□□□□□ -0.19
SMC4-213ENST00000472282 ZFYVE9O95405 1425 aa13.84□□□□□ -0.19
SMC4-213ENST00000472282 EID1Q9Y6B2 187 aa13.84□□□□□ -0.19
SMC4-213ENST00000472282 CHD2O14647 1828 aaKnown RBP13.84□□□□□ -0.19
SMC4-213ENST00000472282 TOM1O60784 492 aa13.83□□□□□ -0.2
SMC4-213ENST00000472282 ILDR2Q71H61 639 aa13.83□□□□□ -0.2
SMC4-213ENST00000472282 NWD1Q149M9 1564 aa13.83□□□□□ -0.2
SMC4-213ENST00000472282 HSPA1LP34931 641 aa13.82□□□□□ -0.2
SMC4-213ENST00000472282 SLC52A1Q9NWF4 448 aa13.82□□□□□ -0.2
SMC4-213ENST00000472282 TRPC6Q9Y210 931 aa13.82□□□□□ -0.2
SMC4-213ENST00000472282 NUP155O75694 1391 aa13.82□□□□□ -0.2
SMC4-213ENST00000472282 SLC26A8Q96RN1 970 aa13.81□□□□□ -0.2
SMC4-213ENST00000472282 RIMS2Q9UQ26 1411 aa13.8□□□□□ -0.2
SMC4-213ENST00000472282 TTLL13PA6NNM8 815 aa13.79□□□□□ -0.2
SMC4-213ENST00000472282 DCAF8Q5TAQ9 597 aa13.79□□□□□ -0.2
SMC4-213ENST00000472282 MED1Q15648 1581 aaPredicted RBP13.79□□□□□ -0.2
SMC4-213ENST00000472282 POTEFA5A3E0 1075 aa13.78□□□□□ -0.2
SMC4-213ENST00000472282 CLTCL1P53675 1640 aa13.77□□□□□ -0.21
SMC4-213ENST00000472282 NAIPQ13075 1403 aa13.77□□□□□ -0.21
SMC4-213ENST00000472282 RBM33Q96EV2 1170 aaKnown RBP13.77□□□□□ -0.21
SMC4-213ENST00000472282 SCUBE2Q9NQ36 999 aa13.77□□□□□ -0.21
SMC4-213ENST00000472282 NRXN3Q9Y4C0 1643 aa13.76□□□□□ -0.21
SMC4-213ENST00000472282 TMEM94Q12767 1356 aa13.76□□□□□ -0.21
SMC4-213ENST00000472282 PLEKHG1Q9ULL1 1385 aa13.76□□□□□ -0.21
SMC4-213ENST00000472282 CHGAP10645 457 aaKnown RBP13.76□□□□□ -0.21
SMC4-213ENST00000472282 NUTM2DQ5VT03 806 aaPredicted RBP13.76□□□□□ -0.21
SMC4-213ENST00000472282 SEC24BO95487 1268 aa13.75□□□□□ -0.21
SMC4-213ENST00000472282 KCNA6P17658 529 aa13.75□□□□□ -0.21
SMC4-213ENST00000472282 CDAN1Q8IWY9 1227 aa13.75□□□□□ -0.21
SMC4-213ENST00000472282 KLHL34Q8N239 644 aa13.75□□□□□ -0.21
SMC4-213ENST00000472282 KIF1BO60333 1816 aa13.75□□□□□ -0.21
SMC4-213ENST00000472282 NKTRP30414 1462 aaKnown RBP13.74□□□□□ -0.21
SMC4-213ENST00000472282 ADAMTS13Q76LX8 1427 aa13.74□□□□□ -0.21
SMC4-213ENST00000472282 VASPP50552 380 aaPredicted RBP13.74□□□□□ -0.21
SMC4-213ENST00000472282 IFNL1Q8IU54 200 aa13.74□□□□□ -0.21
SMC4-213ENST00000472282 BCANQ96GW7 911 aa13.74□□□□□ -0.21
SMC4-213ENST00000472282 ROBO1Q9Y6N7 1651 aa13.74□□□□□ -0.21
SMC4-213ENST00000472282 IER5LQ5T953 404 aa13.73□□□□□ -0.21
SMC4-213ENST00000472282 PPP1R15AO75807 674 aaPredicted RBP13.72□□□□□ -0.21
SMC4-213ENST00000472282 TRIM35Q9UPQ4 493 aa13.72□□□□□ -0.21
SMC4-213ENST00000472282 HFM1A2PYH4 1435 aa13.72□□□□□ -0.21
SMC4-213ENST00000472282 DIP2AQ14689 1571 aa13.71□□□□□ -0.21
SMC4-213ENST00000472282 TRPM2O94759 1503 aa13.71□□□□□ -0.21
SMC4-213ENST00000472282 PROSER2Q86WR7 435 aaPredicted RBP13.71□□□□□ -0.21
SMC4-213ENST00000472282 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.7□□□□□ -0.22
SMC4-213ENST00000472282 NEXMIFQ5QGS0 1516 aa13.69□□□□□ -0.22
SMC4-213ENST00000472282 XRN1Q8IZH2 1706 aaKnown RBP13.69□□□□□ -0.22
SMC4-213ENST00000472282 SETBP1Q9Y6X0 1596 aa13.68□□□□□ -0.22
SMC4-213ENST00000472282 PTPRUQ92729 1446 aa13.68□□□□□ -0.22
SMC4-213ENST00000472282 GSE1Q14687 1217 aa13.68□□□□□ -0.22
SMC4-213ENST00000472282 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.68□□□□□ -0.22
SMC4-213ENST00000472282 TMEM106CQ9BVX2 250 aa13.68□□□□□ -0.22
SMC4-213ENST00000472282 TBX22Q9Y458 520 aa13.68□□□□□ -0.22
SMC4-213ENST00000472282 SETD1AO15047 1707 aaKnown RBP13.67□□□□□ -0.22
SMC4-213ENST00000472282 HDGFP51858 240 aaKnown RBP13.67□□□□□ -0.22
SMC4-213ENST00000472282 FAM135BQ49AJ0 1406 aa13.66□□□□□ -0.22
SMC4-213ENST00000472282 PPLO60437 1756 aa13.66□□□□□ -0.22
SMC4-213ENST00000472282 PYGBP11216 843 aa13.66□□□□□ -0.22
SMC4-213ENST00000472282 PHLPP1O60346 1717 aa13.66□□□□□ -0.22
SMC4-213ENST00000472282 MSH6P52701 1360 aa13.64□□□□□ -0.23
SMC4-213ENST00000472282 SOCS7O14512 581 aa13.64□□□□□ -0.23
SMC4-213ENST00000472282 TRIM52Q96A61 297 aa13.64□□□□□ -0.23
SMC4-213ENST00000472282 PIK3R4Q99570 1358 aa13.63□□□□□ -0.23
SMC4-213ENST00000472282 ZNF326Q5BKZ1 582 aaKnown RBP13.63□□□□□ -0.23
SMC4-213ENST00000472282 SETD5Q9C0A6 1442 aa13.63□□□□□ -0.23
SMC4-213ENST00000472282 NALCNQ8IZF0 1738 aa13.62□□□□□ -0.23
SMC4-213ENST00000472282 COL16A1Q07092 1604 aaPredicted RBP13.62□□□□□ -0.23
SMC4-213ENST00000472282 COLQQ9Y215 455 aaPredicted RBP13.62□□□□□ -0.23
SMC4-213ENST00000472282 IFT172Q9UG01 1749 aa13.61□□□□□ -0.23
SMC4-213ENST00000472282 METP08581 1390 aa13.61□□□□□ -0.23
SMC4-213ENST00000472282 AMOTL2Q9Y2J4 779 aa13.61□□□□□ -0.23
SMC4-213ENST00000472282 NCOA3Q9Y6Q9 1424 aa13.59□□□□□ -0.23
SMC4-213ENST00000472282 SLAIN2Q9P270 581 aa13.59□□□□□ -0.23
SMC4-213ENST00000472282 RAB3GAP2Q9H2M9 1393 aa13.58□□□□□ -0.23
SMC4-213ENST00000472282 PLCG2P16885 1265 aa13.58□□□□□ -0.24
SMC4-213ENST00000472282 TRIM26Q12899 539 aaPredicted RBP13.58□□□□□ -0.24
SMC4-213ENST00000472282 C14orf37Q86TY3 774 aa13.57□□□□□ -0.24
SMC4-213ENST00000472282 RGS17Q9UGC6 210 aaPredicted RBP13.57□□□□□ -0.24
SMC4-213ENST00000472282 ZNF467Q7Z7K2 595 aaPredicted RBP13.56□□□□□ -0.24
SMC4-213ENST00000472282 AHDC1Q5TGY3 1603 aaPredicted RBP13.56□□□□□ -0.24
SMC4-213ENST00000472282 NHSL1Q5SYE7 1610 aa13.55□□□□□ -0.24
SMC4-213ENST00000472282 C19orf44Q9H6X5 657 aa13.55□□□□□ -0.24
SMC4-213ENST00000472282 SHPRHQ149N8 1683 aa13.54□□□□□ -0.24
SMC4-213ENST00000472282 PCDHB8Q9UN66 801 aa13.54□□□□□ -0.24
SMC4-213ENST00000472282 MPHOSPH9Q99550 1183 aa13.53□□□□□ -0.24
SMC4-213ENST00000472282 MST1RQ04912 1400 aa13.53□□□□□ -0.24
SMC4-213ENST00000472282 ATF3P18847 181 aa13.52□□□□□ -0.25
SMC4-213ENST00000472282 CADPS2Q86UW7 1296 aa13.52□□□□□ -0.25
SMC4-213ENST00000472282 DCCP43146 1447 aa13.52□□□□□ -0.25
SMC4-213ENST00000472282 SPATA31E1Q6ZUB1 1445 aa13.52□□□□□ -0.25
SMC4-213ENST00000472282 ADGRL3Q9HAR2 1447 aa13.52□□□□□ -0.25
SMC4-213ENST00000472282 ASXL1Q8IXJ9 1541 aa13.52□□□□□ -0.25
SMC4-213ENST00000472282 LRP6O75581 1613 aa13.51□□□□□ -0.25
SMC4-213ENST00000472282 CHRM1P11229 460 aaPredicted RBP13.51□□□□□ -0.25
SMC4-213ENST00000472282 CCDC144AA2RUR9 1427 aa13.5□□□□□ -0.25
SMC4-213ENST00000472282 ROBO2Q9HCK4 1378 aa13.5□□□□□ -0.25
SMC4-213ENST00000472282 ST18O60284 1047 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms