RNA–Protein interactions for RNA: ENST00000471978.5

C9orf3-213, Transcript of chromosome 9 open reading frame 3, human

TSL 2

Gene C9orf3, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-213	ENST00000471978	PNPLA6	Q8IY17	1366 aa		33.29	■■■□□ 2.92
C9orf3-213	ENST00000471978	ABCC11	Q96J66	1382 aa		33.28	■■■□□ 2.92
C9orf3-213	ENST00000471978	LAMC1	P11047	1609 aa		33.28	■■■□□ 2.92
C9orf3-213	ENST00000471978	CDC42BPG	Q6DT37	1551 aa		33.27	■■■□□ 2.92
C9orf3-213	ENST00000471978	SOS2	Q07890	1332 aa	Predicted RBP	33.25	■■■□□ 2.91
C9orf3-213	ENST00000471978	YTHDC2	Q9H6S0	1430 aa	Known RBP	33.24	■■■□□ 2.91
C9orf3-213	ENST00000471978	KNDC1	Q76NI1	1749 aa		33.23	■■■□□ 2.91
C9orf3-213	ENST00000471978	C14orf93	Q9H972	538 aa	Known RBP	33.23	■■■□□ 2.91
C9orf3-213	ENST00000471978	PLEKHH1	Q9ULM0	1364 aa		33.22	■■■□□ 2.91
C9orf3-213	ENST00000471978	ESCO1	Q5FWF5	840 aa		33.22	■■■□□ 2.91
C9orf3-213	ENST00000471978	MYOM2	P54296	1465 aa		33.22	■■■□□ 2.91
C9orf3-213	ENST00000471978	NRXN1	Q9ULB1	1477 aa		33.22	■■■□□ 2.91
C9orf3-213	ENST00000471978	AFF2	P51816	1311 aa		33.2	■■■□□ 2.91
C9orf3-213	ENST00000471978	CFAP70	Q5T0N1	1121 aa		33.19	■■■□□ 2.9
C9orf3-213	ENST00000471978	C8orf37	Q96NL8	207 aa		33.17	■■■□□ 2.9
C9orf3-213	ENST00000471978	NUTM2F	A1L443	756 aa		33.16	■■■□□ 2.9
C9orf3-213	ENST00000471978	SIRT1	Q96EB6	747 aa		33.16	■■■□□ 2.9
C9orf3-213	ENST00000471978	NPHP3	Q7Z494	1330 aa		33.16	■■■□□ 2.9
C9orf3-213	ENST00000471978	HRC	P23327	699 aa		33.15	■■■□□ 2.9
C9orf3-213	ENST00000471978	DHX57	Q6P158	1386 aa	Known RBP	33.15	■■■□□ 2.9
C9orf3-213	ENST00000471978	RXRB	P28702	533 aa		33.14	■■■□□ 2.9
C9orf3-213	ENST00000471978	ADAMTS2	O95450	1211 aa		33.13	■■■□□ 2.89
C9orf3-213	ENST00000471978	FOXO3	O43524	673 aa		33.12	■■■□□ 2.89
C9orf3-213	ENST00000471978	PXDN	Q92626	1479 aa		33.08	■■■□□ 2.89
C9orf3-213	ENST00000471978	XPC	Q01831	940 aa	Predicted RBP	33.08	■■■□□ 2.89
C9orf3-213	ENST00000471978	NGLY1	Q96IV0	654 aa		33.08	■■■□□ 2.89
C9orf3-213	ENST00000471978	FMN2	Q9NZ56	1722 aa		33.08	■■■□□ 2.89
C9orf3-213	ENST00000471978	PRAM1	Q96QH2	718 aa		33.05	■■■□□ 2.88
C9orf3-213	ENST00000471978	QTRT2	Q9H974	415 aa	Known RBP	33.05	■■■□□ 2.88
C9orf3-213	ENST00000471978	KDM2A	Q9Y2K7	1162 aa		33.05	■■■□□ 2.88
C9orf3-213	ENST00000471978	COL22A1	Q8NFW1	1626 aa	Predicted RBP	33.05	■■■□□ 2.88
C9orf3-213	ENST00000471978	DCAF11	Q8TEB1	546 aa		33.04	■■■□□ 2.88
C9orf3-213	ENST00000471978	SAFB2	Q14151	953 aa	Known RBP eCLIP	33.03	■■■□□ 2.88
C9orf3-213	ENST00000471978	CDK12	Q9NYV4	1490 aa	Predicted RBP	33.02	■■■□□ 2.88
C9orf3-213	ENST00000471978	POGK	Q9P215	609 aa		33.01	■■■□□ 2.87
C9orf3-213	ENST00000471978	DLC1	Q96QB1	1528 aa		32.99	■■■□□ 2.87
C9orf3-213	ENST00000471978	ADGRB1	O14514	1584 aa		32.99	■■■□□ 2.87
C9orf3-213	ENST00000471978	KIF1A	Q12756	1690 aa		32.98	■■■□□ 2.87
C9orf3-213	ENST00000471978	RBM6	P78332	1123 aa	Known RBP	32.98	■■■□□ 2.87
C9orf3-213	ENST00000471978	STAC3	Q96MF2	364 aa		32.97	■■■□□ 2.87
C9orf3-213	ENST00000471978	USP21	Q9UK80	565 aa		32.96	■■■□□ 2.87
C9orf3-213	ENST00000471978	TRAK1	Q9UPV9	953 aa		32.95	■■■□□ 2.87
C9orf3-213	ENST00000471978	PHF8	Q9UPP1	1060 aa		32.94	■■■□□ 2.86
C9orf3-213	ENST00000471978	KRT28	Q7Z3Y7	464 aa		32.93	■■■□□ 2.86
C9orf3-213	ENST00000471978	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.93	■■■□□ 2.86
C9orf3-213	ENST00000471978	RGPD8	O14715	1765 aa	Predicted RBP	32.92	■■■□□ 2.86
C9orf3-213	ENST00000471978	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.92	■■■□□ 2.86
C9orf3-213	ENST00000471978	SPATA31A3	Q5VYP0	1347 aa		32.92	■■■□□ 2.86
C9orf3-213	ENST00000471978	RGS12	O14924	1447 aa		32.9	■■■□□ 2.86
C9orf3-213	ENST00000471978	TRPC5	Q9UL62	973 aa	Predicted RBP	32.89	■■■□□ 2.86
C9orf3-213	ENST00000471978	PSME1	Q06323	249 aa		32.87	■■■□□ 2.85
C9orf3-213	ENST00000471978	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.87	■■■□□ 2.85
C9orf3-213	ENST00000471978	ADGRB2	O60241	1585 aa		32.87	■■■□□ 2.85
C9orf3-213	ENST00000471978	ANKAR	Q7Z5J8	1434 aa		32.85	■■■□□ 2.85
C9orf3-213	ENST00000471978	MINK1	Q8N4C8	1332 aa	Predicted RBP	32.85	■■■□□ 2.85
C9orf3-213	ENST00000471978	MARF1	Q9Y4F3	1742 aa	Known RBP	32.84	■■■□□ 2.85
C9orf3-213	ENST00000471978	USP32	Q8NFA0	1604 aa		32.82	■■■□□ 2.84
C9orf3-213	ENST00000471978	PMFBP1	Q8TBY8	1022 aa		32.82	■■■□□ 2.84
C9orf3-213	ENST00000471978	ATRN	O75882	1429 aa		32.82	■■■□□ 2.84
C9orf3-213	ENST00000471978	TNS3	Q68CZ2	1445 aa		32.82	■■■□□ 2.84
C9orf3-213	ENST00000471978	BCL9L	Q86UU0	1499 aa		32.8	■■■□□ 2.84
C9orf3-213	ENST00000471978	SBNO1	A3KN83	1393 aa		32.79	■■■□□ 2.84
C9orf3-213	ENST00000471978	EIF3A	Q14152	1382 aa	Known RBP	32.78	■■■□□ 2.84
C9orf3-213	ENST00000471978	WASL	O00401	505 aa	Predicted RBP	32.77	■■■□□ 2.84
C9orf3-213	ENST00000471978	LMOD2	Q6P5Q4	547 aa		32.77	■■■□□ 2.84
C9orf3-213	ENST00000471978	HAP1	P54257	671 aa	Predicted RBP	32.76	■■■□□ 2.83
C9orf3-213	ENST00000471978	TULP4	Q9NRJ4	1543 aa		32.74	■■■□□ 2.83
C9orf3-213	ENST00000471978	PLEKHG5	O94827	1062 aa		32.74	■■■□□ 2.83
C9orf3-213	ENST00000471978	CABLES1	Q8TDN4	633 aa		32.74	■■■□□ 2.83
C9orf3-213	ENST00000471978	PRR36	Q9H6K5	1346 aa		32.74	■■■□□ 2.83
C9orf3-213	ENST00000471978	ARHGEF10	O15013	1369 aa		32.73	■■■□□ 2.83
C9orf3-213	ENST00000471978	ARHGEF28	Q8N1W1	1705 aa	Known RBP	32.72	■■■□□ 2.83
C9orf3-213	ENST00000471978	UNC5CL	Q8IV45	518 aa		32.7	■■■□□ 2.83
C9orf3-213	ENST00000471978	GJD4	Q96KN9	370 aa	Predicted RBP	32.7	■■■□□ 2.83
C9orf3-213	ENST00000471978	SLIT2	O94813	1529 aa		32.7	■■■□□ 2.83
C9orf3-213	ENST00000471978	GPRASP1	Q5JY77	1395 aa		32.69	■■■□□ 2.82
C9orf3-213	ENST00000471978	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	32.67	■■■□□ 2.82
C9orf3-213	ENST00000471978	ATAD2	Q6PL18	1390 aa		32.67	■■■□□ 2.82
C9orf3-213	ENST00000471978	KIAA1210	Q9ULL0	1709 aa		32.66	■■■□□ 2.82
C9orf3-213	ENST00000471978	NGDN	Q8NEJ9	315 aa	Known RBP	32.65	■■■□□ 2.82
C9orf3-213	ENST00000471978	TRPM3	Q9HCF6	1732 aa	Predicted RBP	32.64	■■■□□ 2.82
C9orf3-213	ENST00000471978	NBPF1	Q3BBV0	1214 aa		32.63	■■■□□ 2.81
C9orf3-213	ENST00000471978	ABCA3	Q99758	1704 aa		32.63	■■■□□ 2.81
C9orf3-213	ENST00000471978	NUDT16	Q96DE0	195 aa	Known RBP	32.62	■■■□□ 2.81
C9orf3-213	ENST00000471978	RALGAPB	Q86X10	1494 aa		32.61	■■■□□ 2.81
C9orf3-213	ENST00000471978	CDK19	Q9BWU1	502 aa		32.6	■■■□□ 2.81
C9orf3-213	ENST00000471978	ATP7B	P35670	1465 aa		32.6	■■■□□ 2.81
C9orf3-213	ENST00000471978	EP400	Q96L91	3159 aa		32.6	■■■□□ 2.81
C9orf3-213	ENST00000471978	ALS2	Q96Q42	1657 aa		32.58	■■■□□ 2.81
C9orf3-213	ENST00000471978	ITSN1	Q15811	1721 aa		32.57	■■■□□ 2.81
C9orf3-213	ENST00000471978	PAK3	O75914	559 aa	Predicted RBP	32.57	■■■□□ 2.8
C9orf3-213	ENST00000471978	GLI3	P10071	1580 aa		32.57	■■■□□ 2.8
C9orf3-213	ENST00000471978	PLCH1	Q4KWH8	1693 aa		32.56	■■■□□ 2.8
C9orf3-213	ENST00000471978	FAM83G	A6ND36	823 aa		32.56	■■■□□ 2.8
C9orf3-213	ENST00000471978	VPS72	Q15906	364 aa		32.55	■■■□□ 2.8
C9orf3-213	ENST00000471978	NWD2	Q9ULI1	1742 aa		32.54	■■■□□ 2.8
C9orf3-213	ENST00000471978	L3MBTL2	Q969R5	705 aa		32.53	■■■□□ 2.8
C9orf3-213	ENST00000471978	CCDC9	Q9Y3X0	531 aa	Known RBP	32.52	■■■□□ 2.8
C9orf3-213	ENST00000471978	SIN3A	Q96ST3	1273 aa		32.51	■■■□□ 2.79
C9orf3-213	ENST00000471978	CCDC61	Q9Y6R9	512 aa		32.5	■■■□□ 2.79

Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms