RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 LRPPRCP42704 1394 aaKnown RBP28.42■■■□□ 2.14
COL9A3-206ENST00000466532 AFF2P51816 1311 aa28.41■■■□□ 2.14
COL9A3-206ENST00000466532 SOS2Q07890 1332 aaPredicted RBP28.41■■■□□ 2.14
COL9A3-206ENST00000466532 RAB3GAP2Q9H2M9 1393 aa28.39■■■□□ 2.14
COL9A3-206ENST00000466532 TMEM132EQ6IEE7 984 aa28.39■■■□□ 2.14
COL9A3-206ENST00000466532 WAPLQ7Z5K2 1190 aa28.38■■■□□ 2.13
COL9A3-206ENST00000466532 FMN2Q9NZ56 1722 aa28.38■■■□□ 2.13
COL9A3-206ENST00000466532 ABCC11Q96J66 1382 aa28.37■■■□□ 2.13
COL9A3-206ENST00000466532 COL22A1Q8NFW1 1626 aaPredicted RBP28.37■■■□□ 2.13
COL9A3-206ENST00000466532 C8orf37Q96NL8 207 aa28.37■■■□□ 2.13
COL9A3-206ENST00000466532 RXRBP28702 533 aa28.36■■■□□ 2.13
COL9A3-206ENST00000466532 YTHDC2Q9H6S0 1430 aaKnown RBP28.35■■■□□ 2.13
COL9A3-206ENST00000466532 ESCO1Q5FWF5 840 aa28.35■■■□□ 2.13
COL9A3-206ENST00000466532 MYOM2P54296 1465 aa28.34■■■□□ 2.13
COL9A3-206ENST00000466532 PLEKHH1Q9ULM0 1364 aa28.34■■■□□ 2.13
COL9A3-206ENST00000466532 RGPD8O14715 1765 aaPredicted RBP28.34■■■□□ 2.13
COL9A3-206ENST00000466532 NRXN1Q9ULB1 1477 aa28.34■■■□□ 2.13
COL9A3-206ENST00000466532 MARF1Q9Y4F3 1742 aaKnown RBP28.32■■■□□ 2.12
COL9A3-206ENST00000466532 CDK12Q9NYV4 1490 aaPredicted RBP28.32■■■□□ 2.12
COL9A3-206ENST00000466532 ADAMTS2O95450 1211 aa28.31■■■□□ 2.12
COL9A3-206ENST00000466532 NPHP3Q7Z494 1330 aa28.31■■■□□ 2.12
COL9A3-206ENST00000466532 KIF1AQ12756 1690 aa28.3■■■□□ 2.12
COL9A3-206ENST00000466532 PXDNQ92626 1479 aa28.3■■■□□ 2.12
COL9A3-206ENST00000466532 NUTM2FA1L443 756 aa28.3■■■□□ 2.12
COL9A3-206ENST00000466532 C14orf93Q9H972 538 aaKnown RBP28.3■■■□□ 2.12
COL9A3-206ENST00000466532 NGLY1Q96IV0 654 aa28.28■■■□□ 2.12
COL9A3-206ENST00000466532 FOXO3O43524 673 aa28.26■■■□□ 2.11
COL9A3-206ENST00000466532 CFAP70Q5T0N1 1121 aa28.26■■■□□ 2.11
COL9A3-206ENST00000466532 QTRT2Q9H974 415 aaKnown RBP28.26■■■□□ 2.11
COL9A3-206ENST00000466532 DHX57Q6P158 1386 aaKnown RBP28.25■■■□□ 2.11
COL9A3-206ENST00000466532 XPCQ01831 940 aaPredicted RBP28.24■■■□□ 2.11
COL9A3-206ENST00000466532 SIRT1Q96EB6 747 aa28.24■■■□□ 2.11
COL9A3-206ENST00000466532 RBM6P78332 1123 aaKnown RBP28.22■■■□□ 2.11
COL9A3-206ENST00000466532 UPF1Q92900 1129 aaKnown RBP eCLIP28.22■■■□□ 2.11
COL9A3-206ENST00000466532 RGS12O14924 1447 aa28.21■■■□□ 2.11
COL9A3-206ENST00000466532 DLC1Q96QB1 1528 aa28.18■■■□□ 2.1
COL9A3-206ENST00000466532 USP21Q9UK80 565 aa28.18■■■□□ 2.1
COL9A3-206ENST00000466532 ADGRB1O14514 1584 aa28.16■■■□□ 2.1
COL9A3-206ENST00000466532 PRAM1Q96QH2 718 aa28.16■■■□□ 2.1
COL9A3-206ENST00000466532 SAFB2Q14151 953 aaKnown RBP eCLIP28.15■■■□□ 2.1
COL9A3-206ENST00000466532 FNBP4Q8N3X1 1017 aaPredicted RBP28.14■■■□□ 2.1
COL9A3-206ENST00000466532 ADGRB2O60241 1585 aa28.13■■■□□ 2.09
COL9A3-206ENST00000466532 TRPC5Q9UL62 973 aaPredicted RBP28.13■■■□□ 2.09
COL9A3-206ENST00000466532 USP32Q8NFA0 1604 aa28.13■■■□□ 2.09
COL9A3-206ENST00000466532 HRCP23327 699 aa28.12■■■□□ 2.09
COL9A3-206ENST00000466532 POGKQ9P215 609 aa28.11■■■□□ 2.09
COL9A3-206ENST00000466532 KDM2AQ9Y2K7 1162 aa28.11■■■□□ 2.09
COL9A3-206ENST00000466532 TNKS1BP1Q9C0C2 1729 aaKnown RBP28.11■■■□□ 2.09
COL9A3-206ENST00000466532 SPATA31A3Q5VYP0 1347 aa28.11■■■□□ 2.09
COL9A3-206ENST00000466532 ATRNO75882 1429 aa28.1■■■□□ 2.09
COL9A3-206ENST00000466532 KRT28Q7Z3Y7 464 aa28.1■■■□□ 2.09
COL9A3-206ENST00000466532 DCAF11Q8TEB1 546 aa28.1■■■□□ 2.09
COL9A3-206ENST00000466532 PHF8Q9UPP1 1060 aa28.1■■■□□ 2.09
COL9A3-206ENST00000466532 ABCA3Q99758 1704 aa28.07■■■□□ 2.08
COL9A3-206ENST00000466532 TRAK1Q9UPV9 953 aa28.07■■■□□ 2.08
COL9A3-206ENST00000466532 BCL9LQ86UU0 1499 aa28.07■■■□□ 2.08
COL9A3-206ENST00000466532 TNS3Q68CZ2 1445 aa28.06■■■□□ 2.08
COL9A3-206ENST00000466532 ARHGEF28Q8N1W1 1705 aaKnown RBP28.06■■■□□ 2.08
COL9A3-206ENST00000466532 ANKARQ7Z5J8 1434 aa28.05■■■□□ 2.08
COL9A3-206ENST00000466532 PSME1Q06323 249 aa28.04■■■□□ 2.08
COL9A3-206ENST00000466532 STAC3Q96MF2 364 aa28.03■■■□□ 2.08
COL9A3-206ENST00000466532 PLCH1Q4KWH8 1693 aa28.01■■■□□ 2.07
COL9A3-206ENST00000466532 HIRIP3Q9BW71 556 aaPredicted RBP28.01■■■□□ 2.07
COL9A3-206ENST00000466532 TRPM3Q9HCF6 1732 aaPredicted RBP28.01■■■□□ 2.07
COL9A3-206ENST00000466532 SBNO1A3KN83 1393 aa27.99■■■□□ 2.07
COL9A3-206ENST00000466532 ATAD2Q6PL18 1390 aa27.99■■■□□ 2.07
COL9A3-206ENST00000466532 MINK1Q8N4C8 1332 aaPredicted RBP27.99■■■□□ 2.07
COL9A3-206ENST00000466532 PMFBP1Q8TBY8 1022 aa27.99■■■□□ 2.07
COL9A3-206ENST00000466532 ITSN1Q15811 1721 aa27.98■■■□□ 2.07
COL9A3-206ENST00000466532 SLIT2O94813 1529 aa27.98■■■□□ 2.07
COL9A3-206ENST00000466532 TULP4Q9NRJ4 1543 aa27.98■■■□□ 2.07
COL9A3-206ENST00000466532 NWD2Q9ULI1 1742 aa27.98■■■□□ 2.07
COL9A3-206ENST00000466532 HAP1P54257 671 aaPredicted RBP27.97■■■□□ 2.07
COL9A3-206ENST00000466532 EIF3AQ14152 1382 aaKnown RBP27.97■■■□□ 2.07
COL9A3-206ENST00000466532 KIAA1210Q9ULL0 1709 aa27.96■■■□□ 2.07
COL9A3-206ENST00000466532 PLEKHG5O94827 1062 aa27.96■■■□□ 2.07
COL9A3-206ENST00000466532 LMOD2Q6P5Q4 547 aa27.96■■■□□ 2.07
COL9A3-206ENST00000466532 ALS2Q96Q42 1657 aa27.96■■■□□ 2.07
COL9A3-206ENST00000466532 ARHGEF10O15013 1369 aa27.96■■■□□ 2.07
COL9A3-206ENST00000466532 GLI3P10071 1580 aa27.95■■■□□ 2.07
COL9A3-206ENST00000466532 CABLES1Q8TDN4 633 aa27.95■■■□□ 2.06
COL9A3-206ENST00000466532 GJD4Q96KN9 370 aaPredicted RBP27.95■■■□□ 2.06
COL9A3-206ENST00000466532 UNC5CLQ8IV45 518 aa27.94■■■□□ 2.06
COL9A3-206ENST00000466532 BRWD3Q6RI45 1802 aa27.93■■■□□ 2.06
COL9A3-206ENST00000466532 PRR36Q9H6K5 1346 aa27.92■■■□□ 2.06
COL9A3-206ENST00000466532 WASLO00401 505 aaPredicted RBP27.92■■■□□ 2.06
COL9A3-206ENST00000466532 RALGAPBQ86X10 1494 aa27.91■■■□□ 2.06
COL9A3-206ENST00000466532 GPRASP1Q5JY77 1395 aa27.89■■■□□ 2.06
COL9A3-206ENST00000466532 CRYBG1Q9Y4K1 1723 aa27.88■■■□□ 2.05
COL9A3-206ENST00000466532 EP400Q96L91 3159 aa27.86■■■□□ 2.05
COL9A3-206ENST00000466532 NRAPQ86VF7 1730 aa27.85■■■□□ 2.05
COL9A3-206ENST00000466532 ATP7BP35670 1465 aa27.84■■■□□ 2.05
COL9A3-206ENST00000466532 TOPAZ1Q8N9V7 1692 aa27.84■■■□□ 2.05
COL9A3-206ENST00000466532 COL14A1Q05707 1796 aaKnown RBP27.83■■■□□ 2.05
COL9A3-206ENST00000466532 NGDNQ8NEJ9 315 aaKnown RBP27.83■■■□□ 2.05
COL9A3-206ENST00000466532 VPS72Q15906 364 aa27.81■■■□□ 2.04
COL9A3-206ENST00000466532 FAM83GA6ND36 823 aa27.79■■■□□ 2.04
COL9A3-206ENST00000466532 NUDT16Q96DE0 195 aaKnown RBP27.79■■■□□ 2.04
COL9A3-206ENST00000466532 CCDC9Q9Y3X0 531 aaKnown RBP27.79■■■□□ 2.04
COL9A3-206ENST00000466532 PAK3O75914 559 aaPredicted RBP27.78■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms