RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 LRP5O75197 1615 aa18.52■□□□□ 0.56
HDAC4-207ENST00000461113 ZNF326Q5BKZ1 582 aaKnown RBP18.52■□□□□ 0.56
HDAC4-207ENST00000461113 MYOM2P54296 1465 aa18.52■□□□□ 0.55
HDAC4-207ENST00000461113 LAMC1P11047 1609 aa18.5■□□□□ 0.55
HDAC4-207ENST00000461113 NALCNQ8IZF0 1738 aa18.5■□□□□ 0.55
HDAC4-207ENST00000461113 HRCP23327 699 aa18.5■□□□□ 0.55
HDAC4-207ENST00000461113 UNC5CLQ8IV45 518 aa18.49■□□□□ 0.55
HDAC4-207ENST00000461113 SLC4A1APQ9BWU0 796 aaKnown RBP18.49■□□□□ 0.55
HDAC4-207ENST00000461113 E9PCH4 1651 aa18.48■□□□□ 0.55
HDAC4-207ENST00000461113 RALGAPBQ86X10 1494 aa18.48■□□□□ 0.55
HDAC4-207ENST00000461113 SEPT12Q8IYM1 358 aa18.47■□□□□ 0.55
HDAC4-207ENST00000461113 COL22A1Q8NFW1 1626 aaPredicted RBP18.47■□□□□ 0.55
HDAC4-207ENST00000461113 RAB3GAP2Q9H2M9 1393 aa18.46■□□□□ 0.55
HDAC4-207ENST00000461113 XPCQ01831 940 aaPredicted RBP18.46■□□□□ 0.55
HDAC4-207ENST00000461113 ROBO2Q9HCK4 1378 aa18.45■□□□□ 0.54
HDAC4-207ENST00000461113 ESCO1Q5FWF5 840 aa18.45■□□□□ 0.54
HDAC4-207ENST00000461113 NPHP3Q7Z494 1330 aa18.45■□□□□ 0.54
HDAC4-207ENST00000461113 GLI3P10071 1580 aa18.43■□□□□ 0.54
HDAC4-207ENST00000461113 FOXO3O43524 673 aa18.42■□□□□ 0.54
HDAC4-207ENST00000461113 SLIT2O94813 1529 aa18.41■□□□□ 0.54
HDAC4-207ENST00000461113 BAG6P46379 1132 aa18.41■□□□□ 0.54
HDAC4-207ENST00000461113 MPHOSPH9Q99550 1183 aa18.41■□□□□ 0.54
HDAC4-207ENST00000461113 PXDNQ92626 1479 aa18.4■□□□□ 0.54
HDAC4-207ENST00000461113 KRT27Q7Z3Y8 459 aa18.4■□□□□ 0.54
HDAC4-207ENST00000461113 IQGAP3Q86VI3 1631 aa18.4■□□□□ 0.54
HDAC4-207ENST00000461113 YY1P25490 414 aa18.38■□□□□ 0.53
HDAC4-207ENST00000461113 R3HDM1Q15032 1099 aaKnown RBP18.37■□□□□ 0.53
HDAC4-207ENST00000461113 VPS72Q15906 364 aa18.37■□□□□ 0.53
HDAC4-207ENST00000461113 CCDC9Q9Y3X0 531 aaKnown RBP18.37■□□□□ 0.53
HDAC4-207ENST00000461113 ONECUT3O60422 494 aaPredicted RBP18.36■□□□□ 0.53
HDAC4-207ENST00000461113 EN1Q05925 392 aaPredicted RBP18.35■□□□□ 0.53
HDAC4-207ENST00000461113 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.35■□□□□ 0.53
HDAC4-207ENST00000461113 NEXMIFQ5QGS0 1516 aa18.34■□□□□ 0.53
HDAC4-207ENST00000461113 LRPPRCP42704 1394 aaKnown RBP18.34■□□□□ 0.53
HDAC4-207ENST00000461113 NUTM2FA1L443 756 aa18.34■□□□□ 0.53
HDAC4-207ENST00000461113 SPHKAPQ2M3C7 1700 aa18.34■□□□□ 0.53
HDAC4-207ENST00000461113 MARF1Q9Y4F3 1742 aaKnown RBP18.33■□□□□ 0.52
HDAC4-207ENST00000461113 BRWD3Q6RI45 1802 aa18.33■□□□□ 0.52
HDAC4-207ENST00000461113 SPATA31A3Q5VYP0 1347 aa18.32■□□□□ 0.52
HDAC4-207ENST00000461113 A0A0G2JS52 829 aa18.32■□□□□ 0.52
HDAC4-207ENST00000461113 MYT1Q01538 1121 aa18.32■□□□□ 0.52
HDAC4-207ENST00000461113 HAP1P54257 671 aaPredicted RBP18.31■□□□□ 0.52
HDAC4-207ENST00000461113 PCGF6Q9BYE7 350 aa18.31■□□□□ 0.52
HDAC4-207ENST00000461113 VGFO15240 615 aaPredicted RBP18.3■□□□□ 0.52
HDAC4-207ENST00000461113 PLEKHG5O94827 1062 aa18.3■□□□□ 0.52
HDAC4-207ENST00000461113 PRAG1Q86YV5 1406 aa18.3■□□□□ 0.52
HDAC4-207ENST00000461113 CABLES1Q8TDN4 633 aa18.29■□□□□ 0.52
HDAC4-207ENST00000461113 FAM98CQ17RN3 349 aaKnown RBP18.27■□□□□ 0.52
HDAC4-207ENST00000461113 FAM182BQ5T319 152 aa18.27■□□□□ 0.52
HDAC4-207ENST00000461113 KRT28Q7Z3Y7 464 aa18.27■□□□□ 0.52
HDAC4-207ENST00000461113 CDC42BPGQ6DT37 1551 aa18.26■□□□□ 0.51
HDAC4-207ENST00000461113 USP32Q8NFA0 1604 aa18.26■□□□□ 0.51
HDAC4-207ENST00000461113 EZH2Q15910 746 aaKnown RBP18.24■□□□□ 0.51
HDAC4-207ENST00000461113 CCDC144AA2RUR9 1427 aa18.23■□□□□ 0.51
HDAC4-207ENST00000461113 CLTCL1P53675 1640 aa18.23■□□□□ 0.51
HDAC4-207ENST00000461113 FAM83GA6ND36 823 aa18.23■□□□□ 0.51
HDAC4-207ENST00000461113 WAPLQ7Z5K2 1190 aa18.23■□□□□ 0.51
HDAC4-207ENST00000461113 STK26Q9P289 416 aa18.21■□□□□ 0.51
HDAC4-207ENST00000461113 LMOD2Q6P5Q4 547 aa18.2■□□□□ 0.5
HDAC4-207ENST00000461113 DISP2A7MBM2 1401 aa18.19■□□□□ 0.5
HDAC4-207ENST00000461113 PSME1Q06323 249 aa18.19■□□□□ 0.5
HDAC4-207ENST00000461113 TNS3Q68CZ2 1445 aa18.19■□□□□ 0.5
HDAC4-207ENST00000461113 CAMKK2Q96RR4 588 aa18.19■□□□□ 0.5
HDAC4-207ENST00000461113 RPGRIP1LQ68CZ1 1315 aa18.19■□□□□ 0.5
HDAC4-207ENST00000461113 BTG4Q9NY30 223 aa18.17■□□□□ 0.5
HDAC4-207ENST00000461113 PLCH1Q4KWH8 1693 aa18.16■□□□□ 0.5
HDAC4-207ENST00000461113 PHF8Q9UPP1 1060 aa18.16■□□□□ 0.5
HDAC4-207ENST00000461113 PLEKHH1Q9ULM0 1364 aa18.16■□□□□ 0.5
HDAC4-207ENST00000461113 DCAF8L1A6NGE4 600 aa18.15■□□□□ 0.5
HDAC4-207ENST00000461113 RGL3Q3MIN7 710 aa18.15■□□□□ 0.5
HDAC4-207ENST00000461113 ANKRD30BQ9BXX2 1392 aa18.15■□□□□ 0.5
HDAC4-207ENST00000461113 NWD2Q9ULI1 1742 aa18.15■□□□□ 0.5
HDAC4-207ENST00000461113 TRIM37O94972 964 aa18.14■□□□□ 0.49
HDAC4-207ENST00000461113 PPP1R1BQ9UD71 204 aaPredicted RBP18.14■□□□□ 0.49
HDAC4-207ENST00000461113 RGPD1P0DJD0 1748 aa18.13■□□□□ 0.49
HDAC4-207ENST00000461113 SBNO1A3KN83 1393 aa18.13■□□□□ 0.49
HDAC4-207ENST00000461113 ARHGEF10O15013 1369 aa18.13■□□□□ 0.49
HDAC4-207ENST00000461113 APBA3O96018 575 aa18.12■□□□□ 0.49
HDAC4-207ENST00000461113 TECPR2O15040 1411 aa18.12■□□□□ 0.49
HDAC4-207ENST00000461113 SPATA31A5Q5VU36 1347 aa18.11■□□□□ 0.49
HDAC4-207ENST00000461113 SPATA31A7Q8IWB4 1347 aa18.11■□□□□ 0.49
HDAC4-207ENST00000461113 KIF1AQ12756 1690 aa18.11■□□□□ 0.49
HDAC4-207ENST00000461113 KIF1BO60333 1816 aa18.1■□□□□ 0.49
HDAC4-207ENST00000461113 ADGRF5Q8IZF2 1346 aa18.1■□□□□ 0.49
HDAC4-207ENST00000461113 TMEM132EQ6IEE7 984 aa18.1■□□□□ 0.49
HDAC4-207ENST00000461113 DHX57Q6P158 1386 aaKnown RBP18.09■□□□□ 0.49
HDAC4-207ENST00000461113 ABCC11Q96J66 1382 aa18.09■□□□□ 0.49
HDAC4-207ENST00000461113 NBPF8Q3BBV2 869 aa18.09■□□□□ 0.49
HDAC4-207ENST00000461113 NBPF14Q5TI25 921 aa18.09■□□□□ 0.49
HDAC4-207ENST00000461113 FAM196AQ6ZSG2 479 aa18.09■□□□□ 0.49
HDAC4-207ENST00000461113 SPON1Q9HCB6 807 aa18.09■□□□□ 0.49
HDAC4-207ENST00000461113 PARD3Q8TEW0 1356 aa18.08■□□□□ 0.49
HDAC4-207ENST00000461113 TNS1Q9HBL0 1735 aaKnown RBP18.07■□□□□ 0.48
HDAC4-207ENST00000461113 FMN2Q9NZ56 1722 aa18.07■□□□□ 0.48
HDAC4-207ENST00000461113 KCNQ2O43526 872 aa18.07■□□□□ 0.48
HDAC4-207ENST00000461113 IFFO2Q5TF58 517 aa18.07■□□□□ 0.48
HDAC4-207ENST00000461113 NINLQ9Y2I6 1382 aa18.06■□□□□ 0.48
HDAC4-207ENST00000461113 SENP3-EIF4A1A0A087X0R7 540 aa18.06■□□□□ 0.48
HDAC4-207ENST00000461113 ZNF784Q8NCA9 323 aaPredicted RBP18.06■□□□□ 0.48
HDAC4-207ENST00000461113 ADGRB2O60241 1585 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms