RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 C14orf93Q9H972 538 aaKnown RBP18.92■□□□□ 0.62
CHD3-206ENST00000452447 LRP6O75581 1613 aa18.92■□□□□ 0.62
CHD3-206ENST00000452447 MYOM2P54296 1465 aa18.91■□□□□ 0.62
CHD3-206ENST00000452447 YTHDC2Q9H6S0 1430 aaKnown RBP18.9■□□□□ 0.62
CHD3-206ENST00000452447 KNDC1Q76NI1 1749 aa18.9■□□□□ 0.62
CHD3-206ENST00000452447 CFAP70Q5T0N1 1121 aa18.89■□□□□ 0.62
CHD3-206ENST00000452447 CDC42BPGQ6DT37 1551 aa18.89■□□□□ 0.62
CHD3-206ENST00000452447 NRXN1Q9ULB1 1477 aa18.89■□□□□ 0.61
CHD3-206ENST00000452447 DHX57Q6P158 1386 aaKnown RBP18.89■□□□□ 0.61
CHD3-206ENST00000452447 LAMC1P11047 1609 aa18.88■□□□□ 0.61
CHD3-206ENST00000452447 ESCO1Q5FWF5 840 aa18.88■□□□□ 0.61
CHD3-206ENST00000452447 ZNF772Q68DY9 489 aaPredicted RBP18.88■□□□□ 0.61
CHD3-206ENST00000452447 PLEKHH1Q9ULM0 1364 aa18.86■□□□□ 0.61
CHD3-206ENST00000452447 NUTM2FA1L443 756 aa18.86■□□□□ 0.61
CHD3-206ENST00000452447 SOS2Q07890 1332 aaPredicted RBP18.86■□□□□ 0.61
CHD3-206ENST00000452447 PNPLA6Q8IY17 1366 aa18.86■□□□□ 0.61
CHD3-206ENST00000452447 DCAF11Q8TEB1 546 aa18.85■□□□□ 0.61
CHD3-206ENST00000452447 SIRT1Q96EB6 747 aa18.85■□□□□ 0.61
CHD3-206ENST00000452447 KDM2AQ9Y2K7 1162 aa18.85■□□□□ 0.61
CHD3-206ENST00000452447 NPHP3Q7Z494 1330 aa18.84■□□□□ 0.61
CHD3-206ENST00000452447 STAC3Q96MF2 364 aa18.83■□□□□ 0.6
CHD3-206ENST00000452447 FOXO3O43524 673 aa18.81■□□□□ 0.6
CHD3-206ENST00000452447 SAFB2Q14151 953 aaKnown RBP eCLIP18.81■□□□□ 0.6
CHD3-206ENST00000452447 C8orf37Q96NL8 207 aa18.81■□□□□ 0.6
CHD3-206ENST00000452447 PRAM1Q96QH2 718 aa18.81■□□□□ 0.6
CHD3-206ENST00000452447 POGKQ9P215 609 aa18.81■□□□□ 0.6
CHD3-206ENST00000452447 FMN2Q9NZ56 1722 aa18.79■□□□□ 0.6
CHD3-206ENST00000452447 AFF2P51816 1311 aa18.79■□□□□ 0.6
CHD3-206ENST00000452447 ADAMTS2O95450 1211 aa18.78■□□□□ 0.6
CHD3-206ENST00000452447 XPCQ01831 940 aaPredicted RBP18.77■□□□□ 0.6
CHD3-206ENST00000452447 NGLY1Q96IV0 654 aa18.77■□□□□ 0.6
CHD3-206ENST00000452447 DLC1Q96QB1 1528 aa18.77■□□□□ 0.6
CHD3-206ENST00000452447 RXRBP28702 533 aa18.76■□□□□ 0.59
CHD3-206ENST00000452447 TRAK1Q9UPV9 953 aa18.76■□□□□ 0.59
CHD3-206ENST00000452447 ADGRB1O14514 1584 aa18.76■□□□□ 0.59
CHD3-206ENST00000452447 RGPD8O14715 1765 aaPredicted RBP18.75■□□□□ 0.59
CHD3-206ENST00000452447 PXDNQ92626 1479 aa18.75■□□□□ 0.59
CHD3-206ENST00000452447 KIF1AQ12756 1690 aa18.74■□□□□ 0.59
CHD3-206ENST00000452447 COL22A1Q8NFW1 1626 aaPredicted RBP18.72■□□□□ 0.59
CHD3-206ENST00000452447 QTRT2Q9H974 415 aaKnown RBP18.72■□□□□ 0.59
CHD3-206ENST00000452447 PHF8Q9UPP1 1060 aa18.72■□□□□ 0.59
CHD3-206ENST00000452447 KRT28Q7Z3Y7 464 aa18.71■□□□□ 0.59
CHD3-206ENST00000452447 HIRIP3Q9BW71 556 aaPredicted RBP18.7■□□□□ 0.58
CHD3-206ENST00000452447 MINK1Q8N4C8 1332 aaPredicted RBP18.7■□□□□ 0.58
CHD3-206ENST00000452447 PSME1Q06323 249 aa18.69■□□□□ 0.58
CHD3-206ENST00000452447 RBM6P78332 1123 aaKnown RBP18.68■□□□□ 0.58
CHD3-206ENST00000452447 USP21Q9UK80 565 aa18.68■□□□□ 0.58
CHD3-206ENST00000452447 SPATA31A3Q5VYP0 1347 aa18.68■□□□□ 0.58
CHD3-206ENST00000452447 ADGRB2O60241 1585 aa18.68■□□□□ 0.58
CHD3-206ENST00000452447 ANKARQ7Z5J8 1434 aa18.67■□□□□ 0.58
CHD3-206ENST00000452447 CDK12Q9NYV4 1490 aaPredicted RBP18.67■□□□□ 0.58
CHD3-206ENST00000452447 EIF3AQ14152 1382 aaKnown RBP18.67■□□□□ 0.58
CHD3-206ENST00000452447 PMFBP1Q8TBY8 1022 aa18.67■□□□□ 0.58
CHD3-206ENST00000452447 FNBP4Q8N3X1 1017 aaPredicted RBP18.66■□□□□ 0.58
CHD3-206ENST00000452447 TRPC5Q9UL62 973 aaPredicted RBP18.65■□□□□ 0.58
CHD3-206ENST00000452447 MARF1Q9Y4F3 1742 aaKnown RBP18.65■□□□□ 0.58
CHD3-206ENST00000452447 WASLO00401 505 aaPredicted RBP18.64■□□□□ 0.58
CHD3-206ENST00000452447 LMOD2Q6P5Q4 547 aa18.64■□□□□ 0.58
CHD3-206ENST00000452447 ARHGEF28Q8N1W1 1705 aaKnown RBP18.64■□□□□ 0.57
CHD3-206ENST00000452447 USP32Q8NFA0 1604 aa18.64■□□□□ 0.57
CHD3-206ENST00000452447 HAP1P54257 671 aaPredicted RBP18.64■□□□□ 0.57
CHD3-206ENST00000452447 KIAA1210Q9ULL0 1709 aa18.63■□□□□ 0.57
CHD3-206ENST00000452447 TNS3Q68CZ2 1445 aa18.63■□□□□ 0.57
CHD3-206ENST00000452447 SBNO1A3KN83 1393 aa18.62■□□□□ 0.57
CHD3-206ENST00000452447 TULP4Q9NRJ4 1543 aa18.61■□□□□ 0.57
CHD3-206ENST00000452447 PLEKHG5O94827 1062 aa18.61■□□□□ 0.57
CHD3-206ENST00000452447 ARHGEF10O15013 1369 aa18.6■□□□□ 0.57
CHD3-206ENST00000452447 GPRASP1Q5JY77 1395 aa18.6■□□□□ 0.57
CHD3-206ENST00000452447 PRR36Q9H6K5 1346 aa18.59■□□□□ 0.57
CHD3-206ENST00000452447 RGS12O14924 1447 aa18.59■□□□□ 0.57
CHD3-206ENST00000452447 NBPF1Q3BBV0 1214 aa18.59■□□□□ 0.57
CHD3-206ENST00000452447 NGDNQ8NEJ9 315 aaKnown RBP18.59■□□□□ 0.57
CHD3-206ENST00000452447 UPF1Q92900 1129 aaKnown RBP eCLIP18.59■□□□□ 0.57
CHD3-206ENST00000452447 CABLES1Q8TDN4 633 aa18.58■□□□□ 0.56
CHD3-206ENST00000452447 BCL9LQ86UU0 1499 aa18.57■□□□□ 0.56
CHD3-206ENST00000452447 ATRNO75882 1429 aa18.57■□□□□ 0.56
CHD3-206ENST00000452447 L3MBTL2Q969R5 705 aa18.57■□□□□ 0.56
CHD3-206ENST00000452447 NEUROD1Q13562 356 aa18.56■□□□□ 0.56
CHD3-206ENST00000452447 NUDT16Q96DE0 195 aaKnown RBP18.56■□□□□ 0.56
CHD3-206ENST00000452447 SIN3AQ96ST3 1273 aa18.56■□□□□ 0.56
CHD3-206ENST00000452447 CDK19Q9BWU1 502 aa18.56■□□□□ 0.56
CHD3-206ENST00000452447 ITSN1Q15811 1721 aa18.55■□□□□ 0.56
CHD3-206ENST00000452447 UNC5CLQ8IV45 518 aa18.55■□□□□ 0.56
CHD3-206ENST00000452447 PAK3O75914 559 aaPredicted RBP18.54■□□□□ 0.56
CHD3-206ENST00000452447 GJD4Q96KN9 370 aaPredicted RBP18.54■□□□□ 0.56
CHD3-206ENST00000452447 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.53■□□□□ 0.56
CHD3-206ENST00000452447 TRPM3Q9HCF6 1732 aaPredicted RBP18.53■□□□□ 0.56
CHD3-206ENST00000452447 ATP7BP35670 1465 aa18.53■□□□□ 0.56
CHD3-206ENST00000452447 SLIT2O94813 1529 aa18.52■□□□□ 0.56
CHD3-206ENST00000452447 CCDC61Q9Y6R9 512 aa18.51■□□□□ 0.55
CHD3-206ENST00000452447 ABCA3Q99758 1704 aa18.51■□□□□ 0.55
CHD3-206ENST00000452447 CENPJQ9HC77 1338 aaPredicted RBP18.51■□□□□ 0.55
CHD3-206ENST00000452447 ALS2Q96Q42 1657 aa18.5■□□□□ 0.55
CHD3-206ENST00000452447 SRPK2P78362 688 aaKnown RBP18.49■□□□□ 0.55
CHD3-206ENST00000452447 ATAD2Q6PL18 1390 aa18.49■□□□□ 0.55
CHD3-206ENST00000452447 EP400Q96L91 3159 aa18.49■□□□□ 0.55
CHD3-206ENST00000452447 PLCH1Q4KWH8 1693 aa18.48■□□□□ 0.55
CHD3-206ENST00000452447 NWD2Q9ULI1 1742 aa18.48■□□□□ 0.55
CHD3-206ENST00000452447 FAM83GA6ND36 823 aa18.47■□□□□ 0.55
CHD3-206ENST00000452447 CCDC9Q9Y3X0 531 aaKnown RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms