RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 NISCHQ9Y2I1 1504 aa31.8■■■□□ 2.68
CHD3-206ENST00000452447 CCDC180Q9P1Z9 1646 aa28.44■■■□□ 2.14
CHD3-206ENST00000452447 ABCC9O60706 1549 aa28.22■■■□□ 2.11
CHD3-206ENST00000452447 RB1CC1Q8TDY2 1594 aa26.97■■□□□ 1.91
CHD3-206ENST00000452447 NACADO15069 1562 aa26.84■■□□□ 1.89
CHD3-206ENST00000452447 DCAF8L2P0C7V8 631 aa26.84■■□□□ 1.89
CHD3-206ENST00000452447 MYO15BQ96JP2 1530 aa26.53■■□□□ 1.84
CHD3-206ENST00000452447 ZCCHC6Q5VYS8 1495 aaKnown RBP26.39■■□□□ 1.81
CHD3-206ENST00000452447 UNC13AQ9UPW8 1703 aa26.36■■□□□ 1.81
CHD3-206ENST00000452447 PABPN1Q86U42 306 aaKnown RBP eCLIP26.33■■□□□ 1.81
CHD3-206ENST00000452447 DCAF1Q9Y4B6 1507 aa26.27■■□□□ 1.8
CHD3-206ENST00000452447 DNAJC5BQ9UF47 199 aa26.24■■□□□ 1.79
CHD3-206ENST00000452447 BICRAQ9NZM4 1560 aa26.13■■□□□ 1.77
CHD3-206ENST00000452447 SCRIBQ14160 1630 aa25.93■■□□□ 1.74
CHD3-206ENST00000452447 SHROOM4Q9ULL8 1493 aa25.83■■□□□ 1.73
CHD3-206ENST00000452447 EIF4G1Q04637 1599 aaKnown RBP25.5■■□□□ 1.67
CHD3-206ENST00000452447 CC2D2AQ9P2K1 1620 aa25.5■■□□□ 1.67
CHD3-206ENST00000452447 CECR2Q9BXF3 1484 aa25.4■■□□□ 1.66
CHD3-206ENST00000452447 SMARCA4P51532 1647 aa24.76■■□□□ 1.55
CHD3-206ENST00000452447 NCAPD3P42695 1498 aa24.76■■□□□ 1.55
CHD3-206ENST00000452447 ATAD2BQ9ULI0 1458 aa24.72■■□□□ 1.55
CHD3-206ENST00000452447 SMARCA2P51531 1590 aa24.69■■□□□ 1.54
CHD3-206ENST00000452447 BAZ1AQ9NRL2 1556 aaPredicted RBP24.69■■□□□ 1.54
CHD3-206ENST00000452447 HMGXB3Q12766 1538 aa24.6■■□□□ 1.53
CHD3-206ENST00000452447 BAZ1BQ9UIG0 1483 aaKnown RBP24.52■■□□□ 1.52
CHD3-206ENST00000452447 MROH2BQ7Z745 1585 aa24.5■■□□□ 1.51
CHD3-206ENST00000452447 PEG3Q9GZU2 1588 aa24.5■■□□□ 1.51
CHD3-206ENST00000452447 ERCC6Q03468 1493 aa24.39■■□□□ 1.49
CHD3-206ENST00000452447 NESP48681 1621 aa24.29■■□□□ 1.48
CHD3-206ENST00000452447 WIZO95785 1651 aa24.23■■□□□ 1.47
CHD3-206ENST00000452447 CUX2O14529 1486 aa24.22■■□□□ 1.47
CHD3-206ENST00000452447 LAMC3Q9Y6N6 1575 aa24.18■■□□□ 1.46
CHD3-206ENST00000452447 RSF1Q96T23 1441 aaPredicted RBP24.08■■□□□ 1.45
CHD3-206ENST00000452447 PDS5BQ9NTI5 1447 aa24.06■■□□□ 1.44
CHD3-206ENST00000452447 CADPSQ9ULU8 1353 aa24.04■■□□□ 1.44
CHD3-206ENST00000452447 KIF21AQ7Z4S6 1674 aa24■■□□□ 1.43
CHD3-206ENST00000452447 THOC2Q8NI27 1593 aaKnown RBP23.99■■□□□ 1.43
CHD3-206ENST00000452447 DNAJC5Q9H3Z4 198 aa23.95■■□□□ 1.43
CHD3-206ENST00000452447 TOP2AP11388 1531 aaKnown RBP23.93■■□□□ 1.42
CHD3-206ENST00000452447 MRC2Q9UBG0 1479 aa23.81■■□□□ 1.4
CHD3-206ENST00000452447 CFTRP13569 1480 aa23.8■■□□□ 1.4
CHD3-206ENST00000452447 CEP164Q9UPV0 1460 aa23.77■■□□□ 1.4
CHD3-206ENST00000452447 FANCD2Q9BXW9 1451 aa23.76■■□□□ 1.39
CHD3-206ENST00000452447 WDR62O43379 1518 aa23.72■■□□□ 1.39
CHD3-206ENST00000452447 CCDC88BA6NC98 1476 aa23.67■■□□□ 1.38
CHD3-206ENST00000452447 PRDM2Q13029 1718 aa23.6■■□□□ 1.37
CHD3-206ENST00000452447 URB2Q14146 1524 aaKnown RBP23.53■■□□□ 1.36
CHD3-206ENST00000452447 TOPBP1Q92547 1522 aa23.33■■□□□ 1.33
CHD3-206ENST00000452447 ABCC8Q09428 1581 aa23.33■■□□□ 1.33
CHD3-206ENST00000452447 IFT140Q96RY7 1462 aa23.29■■□□□ 1.32
CHD3-206ENST00000452447 SUPT5HO00267 1087 aaKnown RBP23.27■■□□□ 1.32
CHD3-206ENST00000452447 DNMBPQ6XZF7 1577 aa23.27■■□□□ 1.32
CHD3-206ENST00000452447 OSCARQ8IYS5 282 aa23.21■■□□□ 1.31
CHD3-206ENST00000452447 ZNF608Q9ULD9 1512 aaPredicted RBP23.2■■□□□ 1.3
CHD3-206ENST00000452447 POLA1P09884 1462 aaPredicted RBP23.11■■□□□ 1.29
CHD3-206ENST00000452447 EIF4G3O43432 1585 aaKnown RBP23.09■■□□□ 1.29
CHD3-206ENST00000452447 TARBP1Q13395 1621 aaKnown RBP23.09■■□□□ 1.29
CHD3-206ENST00000452447 AQRO60306 1485 aaKnown RBP eCLIP23.04■■□□□ 1.28
CHD3-206ENST00000452447 TRIM41Q8WV44 630 aa23.04■■□□□ 1.28
CHD3-206ENST00000452447 SOGA1O94964 1423 aa23.03■■□□□ 1.28
CHD3-206ENST00000452447 RAD54L2Q9Y4B4 1467 aa23.02■■□□□ 1.28
CHD3-206ENST00000452447 FGD5Q6ZNL6 1462 aa23■■□□□ 1.27
CHD3-206ENST00000452447 CUX1P39880 1505 aa23■■□□□ 1.27
CHD3-206ENST00000452447 TDRD9Q8NDG6 1382 aaKnown RBP22.95■■□□□ 1.26
CHD3-206ENST00000452447 FBLN2P98095 1184 aa22.92■■□□□ 1.26
CHD3-206ENST00000452447 CHD1O14646 1710 aa22.89■■□□□ 1.26
CHD3-206ENST00000452447 WDR97A6NE52 1622 aa22.89■■□□□ 1.26
CHD3-206ENST00000452447 RIMBP3CA6NJZ7 1639 aa22.82■■□□□ 1.24
CHD3-206ENST00000452447 RIMBP3BA6NNM3 1639 aa22.82■■□□□ 1.24
CHD3-206ENST00000452447 RIMBP3Q9UFD9 1639 aa22.82■■□□□ 1.24
CHD3-206ENST00000452447 SNAPC4Q5SXM2 1469 aa22.81■■□□□ 1.24
CHD3-206ENST00000452447 GRIN2BQ13224 1484 aa22.8■■□□□ 1.24
CHD3-206ENST00000452447 CHMP7Q8WUX9 453 aaPredicted RBP22.78■■□□□ 1.24
CHD3-206ENST00000452447 MAGI1Q96QZ7 1491 aaPredicted RBP22.78■■□□□ 1.24
CHD3-206ENST00000452447 ARHGEF11O15085 1522 aa22.77■■□□□ 1.24
CHD3-206ENST00000452447 GAPVD1Q14C86 1478 aa22.75■■□□□ 1.23
CHD3-206ENST00000452447 ABCA10Q8WWZ4 1543 aa22.75■■□□□ 1.23
CHD3-206ENST00000452447 WRNQ14191 1432 aaPredicted RBP eCLIP22.74■■□□□ 1.23
CHD3-206ENST00000452447 TOP2BQ02880 1626 aa22.71■■□□□ 1.23
CHD3-206ENST00000452447 PBRM1Q86U86 1689 aa22.71■■□□□ 1.23
CHD3-206ENST00000452447 BIVM-ERCC5R4GMW8 1640 aa22.7■■□□□ 1.22
CHD3-206ENST00000452447 SYNJ2O15056 1496 aa22.69■■□□□ 1.22
CHD3-206ENST00000452447 ABCA5Q8WWZ7 1642 aa22.68■■□□□ 1.22
CHD3-206ENST00000452447 SYNJ1O43426 1573 aa22.67■■□□□ 1.22
CHD3-206ENST00000452447 CYB5RLQ6IPT4 315 aa22.65■■□□□ 1.22
CHD3-206ENST00000452447 CLASP1Q7Z460 1538 aa22.61■■□□□ 1.21
CHD3-206ENST00000452447 ARAP1Q96P48 1450 aa22.56■■□□□ 1.2
CHD3-206ENST00000452447 ADAMTS12P58397 1594 aa22.49■■□□□ 1.19
CHD3-206ENST00000452447 GRIN2AQ12879 1464 aa22.49■■□□□ 1.19
CHD3-206ENST00000452447 ERICH3Q5RHP9 1530 aa22.48■■□□□ 1.19
CHD3-206ENST00000452447 FHAD1B1AJZ9 1412 aa22.47■■□□□ 1.19
CHD3-206ENST00000452447 NUP160Q12769 1436 aa22.39■■□□□ 1.17
CHD3-206ENST00000452447 CEP170Q5SW79 1584 aa22.39■■□□□ 1.17
CHD3-206ENST00000452447 TRHP20396 242 aaPredicted RBP22.35■■□□□ 1.17
CHD3-206ENST00000452447 KIF27Q86VH2 1401 aa22.31■■□□□ 1.16
CHD3-206ENST00000452447 ERCC6L2Q5T890 1561 aa22.27■■□□□ 1.16
CHD3-206ENST00000452447 SHROOM2Q13796 1616 aa22.26■■□□□ 1.15
CHD3-206ENST00000452447 IGF1RP08069 1367 aa22.25■■□□□ 1.15
CHD3-206ENST00000452447 JPH4Q96JJ6 628 aa22.22■■□□□ 1.15
CHD3-206ENST00000452447 CUL7Q14999 1698 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 181.3 ms