RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 RPGRIP1LQ68CZ1 1315 aa21.95■■□□□ 1.1
HMGN1-208ENST00000443046 BCL9LQ86UU0 1499 aa21.94■■□□□ 1.1
HMGN1-208ENST00000443046 NAIPQ13075 1403 aa21.93■■□□□ 1.1
HMGN1-208ENST00000443046 PXDNQ92626 1479 aa21.93■■□□□ 1.1
HMGN1-208ENST00000443046 PPLO60437 1756 aa21.92■■□□□ 1.1
HMGN1-208ENST00000443046 MARF1Q9Y4F3 1742 aaKnown RBP21.92■■□□□ 1.1
HMGN1-208ENST00000443046 CDC42BPGQ6DT37 1551 aa21.91■■□□□ 1.1
HMGN1-208ENST00000443046 NPHP3Q7Z494 1330 aa21.9■■□□□ 1.1
HMGN1-208ENST00000443046 CCDC125Q86Z20 511 aa21.9■■□□□ 1.1
HMGN1-208ENST00000443046 ZRANB1Q9UGI0 708 aa21.88■■□□□ 1.09
HMGN1-208ENST00000443046 FOXD1Q16676 465 aa21.87■■□□□ 1.09
HMGN1-208ENST00000443046 ESCO1Q5FWF5 840 aa21.87■■□□□ 1.09
HMGN1-208ENST00000443046 PPARGC1BQ86YN6 1023 aaKnown RBP21.87■■□□□ 1.09
HMGN1-208ENST00000443046 GJD4Q96KN9 370 aaPredicted RBP21.86■■□□□ 1.09
HMGN1-208ENST00000443046 RRBP1Q9P2E9 1410 aaKnown RBP21.86■■□□□ 1.09
HMGN1-208ENST00000443046 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.85■■□□□ 1.09
HMGN1-208ENST00000443046 TECPR2O15040 1411 aa21.84■■□□□ 1.09
HMGN1-208ENST00000443046 FOXO3O43524 673 aa21.84■■□□□ 1.09
HMGN1-208ENST00000443046 XPCQ01831 940 aaPredicted RBP21.81■■□□□ 1.08
HMGN1-208ENST00000443046 LRPPRCP42704 1394 aaKnown RBP21.81■■□□□ 1.08
HMGN1-208ENST00000443046 SLIT2O94813 1529 aa21.8■■□□□ 1.08
HMGN1-208ENST00000443046 ADGRF5Q8IZF2 1346 aa21.8■■□□□ 1.08
HMGN1-208ENST00000443046 GLI3P10071 1580 aa21.79■■□□□ 1.08
HMGN1-208ENST00000443046 UNC5CLQ8IV45 518 aa21.79■■□□□ 1.08
HMGN1-208ENST00000443046 SLC4A1APQ9BWU0 796 aaKnown RBP21.79■■□□□ 1.08
HMGN1-208ENST00000443046 RALGAPBQ86X10 1494 aa21.78■■□□□ 1.08
HMGN1-208ENST00000443046 WAPLQ7Z5K2 1190 aa21.78■■□□□ 1.08
HMGN1-208ENST00000443046 ABCC11Q96J66 1382 aa21.77■■□□□ 1.08
HMGN1-208ENST00000443046 SPATA31A3Q5VYP0 1347 aa21.77■■□□□ 1.07
HMGN1-208ENST00000443046 BLMP54132 1417 aaPredicted RBP21.76■■□□□ 1.07
HMGN1-208ENST00000443046 KNDC1Q76NI1 1749 aa21.76■■□□□ 1.07
HMGN1-208ENST00000443046 FMN2Q9NZ56 1722 aa21.75■■□□□ 1.07
HMGN1-208ENST00000443046 SPATA31E1Q6ZUB1 1445 aa21.75■■□□□ 1.07
HMGN1-208ENST00000443046 PLEKHH1Q9ULM0 1364 aa21.74■■□□□ 1.07
HMGN1-208ENST00000443046 BRWD3Q6RI45 1802 aa21.74■■□□□ 1.07
HMGN1-208ENST00000443046 IFT172Q9UG01 1749 aa21.74■■□□□ 1.07
HMGN1-208ENST00000443046 KIF1AQ12756 1690 aa21.73■■□□□ 1.07
HMGN1-208ENST00000443046 NUTM2FA1L443 756 aa21.73■■□□□ 1.07
HMGN1-208ENST00000443046 STK26Q9P289 416 aa21.73■■□□□ 1.07
HMGN1-208ENST00000443046 USP32Q8NFA0 1604 aa21.73■■□□□ 1.07
HMGN1-208ENST00000443046 CCDC144AA2RUR9 1427 aa21.72■■□□□ 1.07
HMGN1-208ENST00000443046 ANKRD30BQ9BXX2 1392 aa21.72■■□□□ 1.07
HMGN1-208ENST00000443046 ONECUT3O60422 494 aaPredicted RBP21.71■■□□□ 1.07
HMGN1-208ENST00000443046 KRT28Q7Z3Y7 464 aa21.7■■□□□ 1.06
HMGN1-208ENST00000443046 SIRT1Q96EB6 747 aa21.7■■□□□ 1.06
HMGN1-208ENST00000443046 PIK3C2GO75747 1445 aa21.7■■□□□ 1.06
HMGN1-208ENST00000443046 TMEM132EQ6IEE7 984 aa21.69■■□□□ 1.06
HMGN1-208ENST00000443046 VPS72Q15906 364 aa21.68■■□□□ 1.06
HMGN1-208ENST00000443046 DEFB132Q7Z7B7 95 aa21.68■■□□□ 1.06
HMGN1-208ENST00000443046 YTHDC2Q9H6S0 1430 aaKnown RBP21.68■■□□□ 1.06
HMGN1-208ENST00000443046 RGL3Q3MIN7 710 aa21.67■■□□□ 1.06
HMGN1-208ENST00000443046 SEPT12Q8IYM1 358 aa21.67■■□□□ 1.06
HMGN1-208ENST00000443046 RGPD8O14715 1765 aaPredicted RBP21.66■■□□□ 1.06
HMGN1-208ENST00000443046 NWD2Q9ULI1 1742 aa21.66■■□□□ 1.06
HMGN1-208ENST00000443046 TNS3Q68CZ2 1445 aa21.66■■□□□ 1.06
HMGN1-208ENST00000443046 PLCH1Q4KWH8 1693 aa21.64■■□□□ 1.05
HMGN1-208ENST00000443046 SBNO1A3KN83 1393 aa21.63■■□□□ 1.05
HMGN1-208ENST00000443046 PHF8Q9UPP1 1060 aa21.63■■□□□ 1.05
HMGN1-208ENST00000443046 LRP5O75197 1615 aa21.62■■□□□ 1.05
HMGN1-208ENST00000443046 PSME1Q06323 249 aa21.62■■□□□ 1.05
HMGN1-208ENST00000443046 CABLES1Q8TDN4 633 aa21.62■■□□□ 1.05
HMGN1-208ENST00000443046 ABCA3Q99758 1704 aa21.62■■□□□ 1.05
HMGN1-208ENST00000443046 NRXN1Q9ULB1 1477 aa21.62■■□□□ 1.05
HMGN1-208ENST00000443046 C14orf93Q9H972 538 aaKnown RBP21.61■■□□□ 1.05
HMGN1-208ENST00000443046 KRT27Q7Z3Y8 459 aa21.6■■□□□ 1.05
HMGN1-208ENST00000443046 SF3B2Q13435 895 aaKnown RBP21.59■■□□□ 1.05
HMGN1-208ENST00000443046 MPHOSPH9Q99550 1183 aa21.59■■□□□ 1.05
HMGN1-208ENST00000443046 FAM83GA6ND36 823 aa21.58■■□□□ 1.05
HMGN1-208ENST00000443046 ARHGEF10O15013 1369 aa21.58■■□□□ 1.04
HMGN1-208ENST00000443046 HAP1P54257 671 aaPredicted RBP21.56■■□□□ 1.04
HMGN1-208ENST00000443046 NRAPQ86VF7 1730 aa21.55■■□□□ 1.04
HMGN1-208ENST00000443046 DHX57Q6P158 1386 aaKnown RBP21.54■■□□□ 1.04
HMGN1-208ENST00000443046 CFAP70Q5T0N1 1121 aa21.53■■□□□ 1.04
HMGN1-208ENST00000443046 ANKARQ7Z5J8 1434 aa21.53■■□□□ 1.04
HMGN1-208ENST00000443046 TRPM3Q9HCF6 1732 aaPredicted RBP21.52■■□□□ 1.04
HMGN1-208ENST00000443046 DLC1Q96QB1 1528 aa21.52■■□□□ 1.04
HMGN1-208ENST00000443046 PRAM1Q96QH2 718 aa21.52■■□□□ 1.04
HMGN1-208ENST00000443046 CCDC9Q9Y3X0 531 aaKnown RBP21.52■■□□□ 1.04
HMGN1-208ENST00000443046 ADGRB2O60241 1585 aa21.5■■□□□ 1.03
HMGN1-208ENST00000443046 HRCP23327 699 aa21.5■■□□□ 1.03
HMGN1-208ENST00000443046 BAG6P46379 1132 aa21.5■■□□□ 1.03
HMGN1-208ENST00000443046 LMOD2Q6P5Q4 547 aa21.5■■□□□ 1.03
HMGN1-208ENST00000443046 ALS2Q96Q42 1657 aa21.5■■□□□ 1.03
HMGN1-208ENST00000443046 PLEKHG5O94827 1062 aa21.49■■□□□ 1.03
HMGN1-208ENST00000443046 PMFBP1Q8TBY8 1022 aa21.49■■□□□ 1.03
HMGN1-208ENST00000443046 PSDA5PKW4 1024 aaPredicted RBP21.48■■□□□ 1.03
HMGN1-208ENST00000443046 SAFB2Q14151 953 aaKnown RBP eCLIP21.48■■□□□ 1.03
HMGN1-208ENST00000443046 FAM98CQ17RN3 349 aaKnown RBP21.48■■□□□ 1.03
HMGN1-208ENST00000443046 BTG4Q9NY30 223 aa21.48■■□□□ 1.03
HMGN1-208ENST00000443046 COL14A1Q05707 1796 aaKnown RBP21.48■■□□□ 1.03
HMGN1-208ENST00000443046 RGPD1P0DJD0 1748 aa21.46■■□□□ 1.03
HMGN1-208ENST00000443046 ADGRB1O14514 1584 aa21.45■■□□□ 1.02
HMGN1-208ENST00000443046 CRYBG1Q9Y4K1 1723 aa21.45■■□□□ 1.02
HMGN1-208ENST00000443046 SPATA31A5Q5VU36 1347 aa21.45■■□□□ 1.02
HMGN1-208ENST00000443046 SPATA31A7Q8IWB4 1347 aa21.45■■□□□ 1.02
HMGN1-208ENST00000443046 DISP2A7MBM2 1401 aa21.45■■□□□ 1.02
HMGN1-208ENST00000443046 THSD7AQ9UPZ6 1657 aa21.44■■□□□ 1.02
HMGN1-208ENST00000443046 EN1Q05925 392 aaPredicted RBP21.43■■□□□ 1.02
HMGN1-208ENST00000443046 POGKQ9P215 609 aa21.43■■□□□ 1.02
HMGN1-208ENST00000443046 PRR36Q9H6K5 1346 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms