RNA–Protein interactions for RNA: ENST00000440234.6

RBM38-205, Transcript of RNA binding motif protein 38, human

TSL 2 BASIC

Gene RBM38, Length 686 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM38-205	ENST00000440234	LRPPRC	P42704	1394 aa	Known RBP	32.47	■■■□□ 2.79
RBM38-205	ENST00000440234	WAPL	Q7Z5K2	1190 aa		32.47	■■■□□ 2.79
RBM38-205	ENST00000440234	ABCC11	Q96J66	1382 aa		32.46	■■■□□ 2.79
RBM38-205	ENST00000440234	TECPR2	O15040	1411 aa		32.44	■■■□□ 2.78
RBM38-205	ENST00000440234	PIK3C2G	O75747	1445 aa		32.44	■■■□□ 2.78
RBM38-205	ENST00000440234	RXRB	P28702	533 aa		32.42	■■■□□ 2.78
RBM38-205	ENST00000440234	ESCO1	Q5FWF5	840 aa		32.42	■■■□□ 2.78
RBM38-205	ENST00000440234	C14orf93	Q9H972	538 aa	Known RBP	32.42	■■■□□ 2.78
RBM38-205	ENST00000440234	AFF2	P51816	1311 aa		32.42	■■■□□ 2.78
RBM38-205	ENST00000440234	IFT172	Q9UG01	1749 aa		32.4	■■■□□ 2.78
RBM38-205	ENST00000440234	LAMC1	P11047	1609 aa		32.4	■■■□□ 2.78
RBM38-205	ENST00000440234	SIRT1	Q96EB6	747 aa		32.38	■■■□□ 2.77
RBM38-205	ENST00000440234	C8orf37	Q96NL8	207 aa		32.38	■■■□□ 2.77
RBM38-205	ENST00000440234	YTHDC2	Q9H6S0	1430 aa	Known RBP	32.36	■■■□□ 2.77
RBM38-205	ENST00000440234	PLEKHH1	Q9ULM0	1364 aa		32.36	■■■□□ 2.77
RBM38-205	ENST00000440234	CDC42BPG	Q6DT37	1551 aa		32.36	■■■□□ 2.77
RBM38-205	ENST00000440234	NPHP3	Q7Z494	1330 aa		32.35	■■■□□ 2.77
RBM38-205	ENST00000440234	CFAP70	Q5T0N1	1121 aa		32.35	■■■□□ 2.77
RBM38-205	ENST00000440234	ADAMTS2	O95450	1211 aa		32.34	■■■□□ 2.77
RBM38-205	ENST00000440234	NUTM2F	A1L443	756 aa		32.33	■■■□□ 2.77
RBM38-205	ENST00000440234	FOXO3	O43524	673 aa		32.33	■■■□□ 2.77
RBM38-205	ENST00000440234	NRXN1	Q9ULB1	1477 aa		32.32	■■■□□ 2.76
RBM38-205	ENST00000440234	NGLY1	Q96IV0	654 aa		32.32	■■■□□ 2.76
RBM38-205	ENST00000440234	QTRT2	Q9H974	415 aa	Known RBP	32.32	■■■□□ 2.76
RBM38-205	ENST00000440234	DHX57	Q6P158	1386 aa	Known RBP	32.31	■■■□□ 2.76
RBM38-205	ENST00000440234	MYOM2	P54296	1465 aa		32.29	■■■□□ 2.76
RBM38-205	ENST00000440234	XPC	Q01831	940 aa	Predicted RBP	32.26	■■■□□ 2.75
RBM38-205	ENST00000440234	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.26	■■■□□ 2.75
RBM38-205	ENST00000440234	KNDC1	Q76NI1	1749 aa		32.26	■■■□□ 2.75
RBM38-205	ENST00000440234	RBM6	P78332	1123 aa	Known RBP	32.25	■■■□□ 2.75
RBM38-205	ENST00000440234	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.24	■■■□□ 2.75	3e-6	■■□□□ 13.7
RBM38-205	ENST00000440234	PXDN	Q92626	1479 aa		32.23	■■■□□ 2.75
RBM38-205	ENST00000440234	FNBP4	Q8N3X1	1017 aa	Predicted RBP	32.21	■■■□□ 2.75
RBM38-205	ENST00000440234	PRAM1	Q96QH2	718 aa		32.21	■■■□□ 2.75
RBM38-205	ENST00000440234	USP21	Q9UK80	565 aa		32.2	■■■□□ 2.75
RBM38-205	ENST00000440234	KDM2A	Q9Y2K7	1162 aa		32.18	■■■□□ 2.74
RBM38-205	ENST00000440234	SAFB2	Q14151	953 aa	Known RBP eCLIP	32.17	■■■□□ 2.74
RBM38-205	ENST00000440234	DCAF11	Q8TEB1	546 aa		32.17	■■■□□ 2.74
RBM38-205	ENST00000440234	STAC3	Q96MF2	364 aa		32.16	■■■□□ 2.74
RBM38-205	ENST00000440234	POGK	Q9P215	609 aa		32.16	■■■□□ 2.74
RBM38-205	ENST00000440234	COL22A1	Q8NFW1	1626 aa	Predicted RBP	32.15	■■■□□ 2.74
RBM38-205	ENST00000440234	KRT28	Q7Z3Y7	464 aa		32.15	■■■□□ 2.74
RBM38-205	ENST00000440234	TRPC5	Q9UL62	973 aa	Predicted RBP	32.14	■■■□□ 2.74
RBM38-205	ENST00000440234	SPATA31A3	Q5VYP0	1347 aa		32.14	■■■□□ 2.74
RBM38-205	ENST00000440234	FMN2	Q9NZ56	1722 aa		32.14	■■■□□ 2.74
RBM38-205	ENST00000440234	PHF8	Q9UPP1	1060 aa		32.13	■■■□□ 2.73
RBM38-205	ENST00000440234	RGS12	O14924	1447 aa		32.1	■■■□□ 2.73
RBM38-205	ENST00000440234	TRAK1	Q9UPV9	953 aa		32.1	■■■□□ 2.73
RBM38-205	ENST00000440234	DLC1	Q96QB1	1528 aa		32.1	■■■□□ 2.73
RBM38-205	ENST00000440234	PSME1	Q06323	249 aa		32.08	■■■□□ 2.73
RBM38-205	ENST00000440234	ADGRB1	O14514	1584 aa		32.07	■■■□□ 2.72
RBM38-205	ENST00000440234	KIF1A	Q12756	1690 aa		32.05	■■■□□ 2.72
RBM38-205	ENST00000440234	ATRN	O75882	1429 aa		32.04	■■■□□ 2.72
RBM38-205	ENST00000440234	BCL9L	Q86UU0	1499 aa		32.03	■■■□□ 2.72
RBM38-205	ENST00000440234	HIRIP3	Q9BW71	556 aa	Predicted RBP	32.01	■■■□□ 2.71
RBM38-205	ENST00000440234	PMFBP1	Q8TBY8	1022 aa		32	■■■□□ 2.71
RBM38-205	ENST00000440234	ANKAR	Q7Z5J8	1434 aa		32	■■■□□ 2.71
RBM38-205	ENST00000440234	MINK1	Q8N4C8	1332 aa	Predicted RBP	31.99	■■■□□ 2.71
RBM38-205	ENST00000440234	SBNO1	A3KN83	1393 aa		31.98	■■■□□ 2.71
RBM38-205	ENST00000440234	RGPD8	O14715	1765 aa	Predicted RBP	31.97	■■■□□ 2.71
RBM38-205	ENST00000440234	TNS3	Q68CZ2	1445 aa		31.97	■■■□□ 2.71
RBM38-205	ENST00000440234	GJD4	Q96KN9	370 aa	Predicted RBP	31.96	■■■□□ 2.71
RBM38-205	ENST00000440234	WASL	O00401	505 aa	Predicted RBP	31.95	■■■□□ 2.71
RBM38-205	ENST00000440234	HAP1	P54257	671 aa	Predicted RBP	31.95	■■■□□ 2.71
RBM38-205	ENST00000440234	LMOD2	Q6P5Q4	547 aa		31.95	■■■□□ 2.71
RBM38-205	ENST00000440234	UNC5CL	Q8IV45	518 aa		31.95	■■■□□ 2.71
RBM38-205	ENST00000440234	CABLES1	Q8TDN4	633 aa		31.95	■■■□□ 2.71
RBM38-205	ENST00000440234	ADGRB2	O60241	1585 aa		31.94	■■■□□ 2.7
RBM38-205	ENST00000440234	CCER1	Q8TC90	406 aa	Predicted RBP	31.93	■■■□□ 2.7
RBM38-205	ENST00000440234	EIF3A	Q14152	1382 aa	Known RBP	31.93	■■■□□ 2.7
RBM38-205	ENST00000440234	PRR36	Q9H6K5	1346 aa		31.92	■■■□□ 2.7
RBM38-205	ENST00000440234	MARF1	Q9Y4F3	1742 aa	Known RBP	31.92	■■■□□ 2.7
RBM38-205	ENST00000440234	SLIT2	O94813	1529 aa		31.91	■■■□□ 2.7
RBM38-205	ENST00000440234	ARHGEF10	O15013	1369 aa		31.91	■■■□□ 2.7
RBM38-205	ENST00000440234	ATAD2	Q6PL18	1390 aa		31.91	■■■□□ 2.7
RBM38-205	ENST00000440234	USP32	Q8NFA0	1604 aa		31.9	■■■□□ 2.7
RBM38-205	ENST00000440234	PLEKHG5	O94827	1062 aa		31.89	■■■□□ 2.7
RBM38-205	ENST00000440234	GPRASP1	Q5JY77	1395 aa		31.87	■■■□□ 2.69
RBM38-205	ENST00000440234	CLSPN	Q9HAW4	1339 aa		31.87	■■■□□ 2.69
RBM38-205	ENST00000440234	TULP4	Q9NRJ4	1543 aa		31.84	■■■□□ 2.69
RBM38-205	ENST00000440234	NGDN	Q8NEJ9	315 aa	Known RBP	31.83	■■■□□ 2.69
RBM38-205	ENST00000440234	NUDT16	Q96DE0	195 aa	Known RBP	31.81	■■■□□ 2.68
RBM38-205	ENST00000440234	RALGAPB	Q86X10	1494 aa		31.8	■■■□□ 2.68
RBM38-205	ENST00000440234	FAM83G	A6ND36	823 aa		31.8	■■■□□ 2.68
RBM38-205	ENST00000440234	VPS72	Q15906	364 aa		31.8	■■■□□ 2.68
RBM38-205	ENST00000440234	SIN3A	Q96ST3	1273 aa		31.8	■■■□□ 2.68
RBM38-205	ENST00000440234	NEUROD1	Q13562	356 aa		31.79	■■■□□ 2.68
RBM38-205	ENST00000440234	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	31.78	■■■□□ 2.68
RBM38-205	ENST00000440234	NBPF1	Q3BBV0	1214 aa		31.78	■■■□□ 2.68
RBM38-205	ENST00000440234	CDK19	Q9BWU1	502 aa		31.78	■■■□□ 2.68
RBM38-205	ENST00000440234	CCDC125	Q86Z20	511 aa		31.75	■■■□□ 2.67
RBM38-205	ENST00000440234	GLI3	P10071	1580 aa		31.74	■■■□□ 2.67
RBM38-205	ENST00000440234	PAK3	O75914	559 aa	Predicted RBP	31.74	■■■□□ 2.67
RBM38-205	ENST00000440234	ARHGEF28	Q8N1W1	1705 aa	Known RBP	31.74	■■■□□ 2.67
RBM38-205	ENST00000440234	CCDC9	Q9Y3X0	531 aa	Known RBP	31.73	■■■□□ 2.67
RBM38-205	ENST00000440234	TRPM3	Q9HCF6	1732 aa	Predicted RBP	31.72	■■■□□ 2.67
RBM38-205	ENST00000440234	ONECUT3	O60422	494 aa	Predicted RBP	31.72	■■■□□ 2.67
RBM38-205	ENST00000440234	ATP7B	P35670	1465 aa		31.72	■■■□□ 2.67
RBM38-205	ENST00000440234	SEPT12	Q8IYM1	358 aa		31.71	■■■□□ 2.67
RBM38-205	ENST00000440234	CCDC61	Q9Y6R9	512 aa		31.71	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms