RNA–Protein interactions for RNA: ENST00000439120.1

AC004540.1-201, humanhuman

TSL 2 BASIC

Gene AC004540.1, Length 891 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-201ENST00000439120 KNDC1Q76NI1 1749 aa27.18■■□□□ 1.94
AC004540.1-201ENST00000439120 ABCC11Q96J66 1382 aa27.16■■□□□ 1.94
AC004540.1-201ENST00000439120 LAMC1P11047 1609 aa27.16■■□□□ 1.94
AC004540.1-201ENST00000439120 PNPLA6Q8IY17 1366 aa27.15■■□□□ 1.94
AC004540.1-201ENST00000439120 WAPLQ7Z5K2 1190 aa27.15■■□□□ 1.94
AC004540.1-201ENST00000439120 MYOM2P54296 1465 aa27.14■■□□□ 1.94
AC004540.1-201ENST00000439120 YTHDC2Q9H6S0 1430 aaKnown RBP27.14■■□□□ 1.93
AC004540.1-201ENST00000439120 ESCO1Q5FWF5 840 aa27.13■■□□□ 1.93
AC004540.1-201ENST00000439120 C14orf93Q9H972 538 aaKnown RBP27.11■■□□□ 1.93
AC004540.1-201ENST00000439120 SOS2Q07890 1332 aaPredicted RBP27.11■■□□□ 1.93
AC004540.1-201ENST00000439120 NRXN1Q9ULB1 1477 aa27.1■■□□□ 1.93
AC004540.1-201ENST00000439120 DHX57Q6P158 1386 aaKnown RBP27.09■■□□□ 1.93
AC004540.1-201ENST00000439120 C8orf37Q96NL8 207 aa27.09■■□□□ 1.93
AC004540.1-201ENST00000439120 NPHP3Q7Z494 1330 aa27.09■■□□□ 1.93
AC004540.1-201ENST00000439120 PLEKHH1Q9ULM0 1364 aa27.09■■□□□ 1.93
AC004540.1-201ENST00000439120 NUTM2FA1L443 756 aa27.08■■□□□ 1.93
AC004540.1-201ENST00000439120 CFAP70Q5T0N1 1121 aa27.08■■□□□ 1.93
AC004540.1-201ENST00000439120 AFF2P51816 1311 aa27.08■■□□□ 1.93
AC004540.1-201ENST00000439120 HRCP23327 699 aa27.06■■□□□ 1.92
AC004540.1-201ENST00000439120 ADAMTS2O95450 1211 aa27.04■■□□□ 1.92
AC004540.1-201ENST00000439120 RXRBP28702 533 aa27.04■■□□□ 1.92
AC004540.1-201ENST00000439120 SIRT1Q96EB6 747 aa27.04■■□□□ 1.92
AC004540.1-201ENST00000439120 FMN2Q9NZ56 1722 aa27.04■■□□□ 1.92
AC004540.1-201ENST00000439120 FOXO3O43524 673 aa27.02■■□□□ 1.92
AC004540.1-201ENST00000439120 NGLY1Q96IV0 654 aa27.01■■□□□ 1.91
AC004540.1-201ENST00000439120 KDM2AQ9Y2K7 1162 aa27■■□□□ 1.91
AC004540.1-201ENST00000439120 XPCQ01831 940 aaPredicted RBP26.99■■□□□ 1.91
AC004540.1-201ENST00000439120 DCAF11Q8TEB1 546 aa26.99■■□□□ 1.91
AC004540.1-201ENST00000439120 PRAM1Q96QH2 718 aa26.99■■□□□ 1.91
AC004540.1-201ENST00000439120 PXDNQ92626 1479 aa26.99■■□□□ 1.91
AC004540.1-201ENST00000439120 KIF1AQ12756 1690 aa26.98■■□□□ 1.91
AC004540.1-201ENST00000439120 COL22A1Q8NFW1 1626 aaPredicted RBP26.98■■□□□ 1.91
AC004540.1-201ENST00000439120 SAFB2Q14151 953 aaKnown RBP eCLIP26.98■■□□□ 1.91
AC004540.1-201ENST00000439120 POGKQ9P215 609 aa26.98■■□□□ 1.91
AC004540.1-201ENST00000439120 DLC1Q96QB1 1528 aa26.95■■□□□ 1.91
AC004540.1-201ENST00000439120 STAC3Q96MF2 364 aa26.95■■□□□ 1.9
AC004540.1-201ENST00000439120 QTRT2Q9H974 415 aaKnown RBP26.95■■□□□ 1.9
AC004540.1-201ENST00000439120 CDK12Q9NYV4 1490 aaPredicted RBP26.94■■□□□ 1.9
AC004540.1-201ENST00000439120 TRAK1Q9UPV9 953 aa26.92■■□□□ 1.9
AC004540.1-201ENST00000439120 ADGRB1O14514 1584 aa26.92■■□□□ 1.9
AC004540.1-201ENST00000439120 RGPD8O14715 1765 aaPredicted RBP26.92■■□□□ 1.9
AC004540.1-201ENST00000439120 RBM6P78332 1123 aaKnown RBP26.91■■□□□ 1.9
AC004540.1-201ENST00000439120 USP21Q9UK80 565 aa26.9■■□□□ 1.9
AC004540.1-201ENST00000439120 PHF8Q9UPP1 1060 aa26.89■■□□□ 1.9
AC004540.1-201ENST00000439120 KRT28Q7Z3Y7 464 aa26.88■■□□□ 1.89
AC004540.1-201ENST00000439120 ADGRB2O60241 1585 aa26.86■■□□□ 1.89
AC004540.1-201ENST00000439120 PSME1Q06323 249 aa26.86■■□□□ 1.89
AC004540.1-201ENST00000439120 MARF1Q9Y4F3 1742 aaKnown RBP26.86■■□□□ 1.89
AC004540.1-201ENST00000439120 SPATA31A3Q5VYP0 1347 aa26.86■■□□□ 1.89
AC004540.1-201ENST00000439120 TRPC5Q9UL62 973 aaPredicted RBP26.85■■□□□ 1.89
AC004540.1-201ENST00000439120 FNBP4Q8N3X1 1017 aaPredicted RBP26.84■■□□□ 1.89
AC004540.1-201ENST00000439120 HIRIP3Q9BW71 556 aaPredicted RBP26.84■■□□□ 1.89
AC004540.1-201ENST00000439120 RGS12O14924 1447 aa26.83■■□□□ 1.89
AC004540.1-201ENST00000439120 ANKARQ7Z5J8 1434 aa26.83■■□□□ 1.89
AC004540.1-201ENST00000439120 MINK1Q8N4C8 1332 aaPredicted RBP26.83■■□□□ 1.89
AC004540.1-201ENST00000439120 EIF3AQ14152 1382 aaKnown RBP26.83■■□□□ 1.88
AC004540.1-201ENST00000439120 HAP1P54257 671 aaPredicted RBP26.82■■□□□ 1.88
AC004540.1-201ENST00000439120 UPF1Q92900 1129 aaKnown RBP eCLIP26.82■■□□□ 1.88
AC004540.1-201ENST00000439120 TNS3Q68CZ2 1445 aa26.81■■□□□ 1.88
AC004540.1-201ENST00000439120 USP32Q8NFA0 1604 aa26.79■■□□□ 1.88
AC004540.1-201ENST00000439120 LMOD2Q6P5Q4 547 aa26.79■■□□□ 1.88
AC004540.1-201ENST00000439120 PMFBP1Q8TBY8 1022 aa26.79■■□□□ 1.88
AC004540.1-201ENST00000439120 ARHGEF28Q8N1W1 1705 aaKnown RBP26.77■■□□□ 1.88
AC004540.1-201ENST00000439120 ATRNO75882 1429 aa26.76■■□□□ 1.87
AC004540.1-201ENST00000439120 SBNO1A3KN83 1393 aa26.76■■□□□ 1.87
AC004540.1-201ENST00000439120 PLEKHG5O94827 1062 aa26.76■■□□□ 1.87
AC004540.1-201ENST00000439120 TULP4Q9NRJ4 1543 aa26.75■■□□□ 1.87
AC004540.1-201ENST00000439120 ARHGEF10O15013 1369 aa26.75■■□□□ 1.87
AC004540.1-201ENST00000439120 WASLO00401 505 aaPredicted RBP26.75■■□□□ 1.87
AC004540.1-201ENST00000439120 GPRASP1Q5JY77 1395 aa26.73■■□□□ 1.87
AC004540.1-201ENST00000439120 BCL9LQ86UU0 1499 aa26.73■■□□□ 1.87
AC004540.1-201ENST00000439120 KIAA1210Q9ULL0 1709 aa26.73■■□□□ 1.87
AC004540.1-201ENST00000439120 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.7■■□□□ 1.87
AC004540.1-201ENST00000439120 CABLES1Q8TDN4 633 aa26.7■■□□□ 1.86
AC004540.1-201ENST00000439120 PRR36Q9H6K5 1346 aa26.69■■□□□ 1.86
AC004540.1-201ENST00000439120 ITSN1Q15811 1721 aa26.69■■□□□ 1.86
AC004540.1-201ENST00000439120 NGDNQ8NEJ9 315 aaKnown RBP26.69■■□□□ 1.86
AC004540.1-201ENST00000439120 UNC5CLQ8IV45 518 aa26.68■■□□□ 1.86
AC004540.1-201ENST00000439120 ATAD2Q6PL18 1390 aa26.68■■□□□ 1.86
AC004540.1-201ENST00000439120 ABCA3Q99758 1704 aa26.68■■□□□ 1.86
AC004540.1-201ENST00000439120 SLIT2O94813 1529 aa26.67■■□□□ 1.86
AC004540.1-201ENST00000439120 GJD4Q96KN9 370 aaPredicted RBP26.67■■□□□ 1.86
AC004540.1-201ENST00000439120 TRPM3Q9HCF6 1732 aaPredicted RBP26.66■■□□□ 1.86
AC004540.1-201ENST00000439120 PAK3O75914 559 aaPredicted RBP26.63■■□□□ 1.85
AC004540.1-201ENST00000439120 NUDT16Q96DE0 195 aaKnown RBP26.63■■□□□ 1.85
AC004540.1-201ENST00000439120 PLCH1Q4KWH8 1693 aa26.63■■□□□ 1.85
AC004540.1-201ENST00000439120 ALS2Q96Q42 1657 aa26.62■■□□□ 1.85
AC004540.1-201ENST00000439120 ATP7BP35670 1465 aa26.62■■□□□ 1.85
AC004540.1-201ENST00000439120 NBPF1Q3BBV0 1214 aa26.61■■□□□ 1.85
AC004540.1-201ENST00000439120 CDK19Q9BWU1 502 aa26.61■■□□□ 1.85
AC004540.1-201ENST00000439120 NWD2Q9ULI1 1742 aa26.61■■□□□ 1.85
AC004540.1-201ENST00000439120 RALGAPBQ86X10 1494 aa26.6■■□□□ 1.85
AC004540.1-201ENST00000439120 CCDC9Q9Y3X0 531 aaKnown RBP26.59■■□□□ 1.85
AC004540.1-201ENST00000439120 GLI3P10071 1580 aa26.58■■□□□ 1.85
AC004540.1-201ENST00000439120 L3MBTL2Q969R5 705 aa26.56■■□□□ 1.84
AC004540.1-201ENST00000439120 VPS72Q15906 364 aa26.55■■□□□ 1.84
AC004540.1-201ENST00000439120 FAM83GA6ND36 823 aa26.54■■□□□ 1.84
AC004540.1-201ENST00000439120 NEUROD1Q13562 356 aa26.54■■□□□ 1.84
AC004540.1-201ENST00000439120 CCDC61Q9Y6R9 512 aa26.54■■□□□ 1.84
AC004540.1-201ENST00000439120 CENPJQ9HC77 1338 aaPredicted RBP26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms