RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 FAM161AQ3B820 660 aa15.32■□□□□ 0.04
CD44-209ENST00000433892 DDRGK1Q96HY6 314 aa15.32■□□□□ 0.04
CD44-209ENST00000433892 RPGRIP1LQ68CZ1 1315 aa15.32■□□□□ 0.04
CD44-209ENST00000433892 RAPGEF3O95398 923 aa15.31■□□□□ 0.04
CD44-209ENST00000433892 C8orf34Q49A92 452 aa15.31■□□□□ 0.04
CD44-209ENST00000433892 ZC3H13Q5T200 1668 aaKnown RBP15.31■□□□□ 0.04
CD44-209ENST00000433892 MTHFSP49914 203 aa15.31■□□□□ 0.04
CD44-209ENST00000433892 RUNDC1Q96C34 613 aa15.31■□□□□ 0.04
CD44-209ENST00000433892 ABCC3O15438 1527 aa15.3■□□□□ 0.04
CD44-209ENST00000433892 HECW2Q9P2P5 1572 aa15.3■□□□□ 0.04
CD44-209ENST00000433892 NEFMP07197 916 aa15.3■□□□□ 0.04
CD44-209ENST00000433892 CANXP27824 592 aaKnown RBP15.3■□□□□ 0.04
CD44-209ENST00000433892 TCP11L2Q8N4U5 519 aa15.3■□□□□ 0.04
CD44-209ENST00000433892 CGNL1Q0VF96 1302 aa15.3■□□□□ 0.04
CD44-209ENST00000433892 IGHDP01880 384 aa15.29■□□□□ 0.04
CD44-209ENST00000433892 PANK1Q8TE04 598 aa15.29■□□□□ 0.04
CD44-209ENST00000433892 SENP3Q9H4L4 574 aaPredicted RBP15.29■□□□□ 0.04
CD44-209ENST00000433892 SHPRHQ149N8 1683 aa15.29■□□□□ 0.04
CD44-209ENST00000433892 PDE3AQ14432 1141 aa15.29■□□□□ 0.04
CD44-209ENST00000433892 CFAP74Q9C0B2 1584 aa15.28■□□□□ 0.04
CD44-209ENST00000433892 FRAT1Q92837 279 aaPredicted RBP15.28■□□□□ 0.04
CD44-209ENST00000433892 COG6Q9Y2V7 657 aa15.28■□□□□ 0.04
CD44-209ENST00000433892 VGFO15240 615 aaPredicted RBP15.28■□□□□ 0.04
CD44-209ENST00000433892 SLC4A3P48751 1232 aa15.28■□□□□ 0.04
CD44-209ENST00000433892 SAFB2Q14151 953 aaKnown RBP eCLIP15.28■□□□□ 0.04
CD44-209ENST00000433892 OSCARQ8IYS5 282 aa15.28■□□□□ 0.04
CD44-209ENST00000433892 EVC2Q86UK5 1308 aa15.27■□□□□ 0.04
CD44-209ENST00000433892 CABP2Q9NPB3 220 aa15.27■□□□□ 0.03
CD44-209ENST00000433892 GLI2P10070 1586 aa15.26■□□□□ 0.03
CD44-209ENST00000433892 CFAP53Q96M91 514 aa15.26■□□□□ 0.03
CD44-209ENST00000433892 SIGLEC1Q9BZZ2 1709 aa15.26■□□□□ 0.03
CD44-209ENST00000433892 PPM1GO15355 546 aaPredicted RBP15.26■□□□□ 0.03
CD44-209ENST00000433892 CLUAP1Q96AJ1 413 aa15.26■□□□□ 0.03
CD44-209ENST00000433892 CAMSAP1Q5T5Y3 1602 aa15.25■□□□□ 0.03
CD44-209ENST00000433892 RARSP54136 660 aaKnown RBP15.25■□□□□ 0.03
CD44-209ENST00000433892 PHF23Q9BUL5 403 aaPredicted RBP15.25■□□□□ 0.03
CD44-209ENST00000433892 TULP4Q9NRJ4 1543 aa15.24■□□□□ 0.03
CD44-209ENST00000433892 IQSEC2Q5JU85 1478 aa15.24■□□□□ 0.03
CD44-209ENST00000433892 IDI1Q13907 227 aa15.24■□□□□ 0.03
CD44-209ENST00000433892 STK26Q9P289 416 aa15.24■□□□□ 0.03
CD44-209ENST00000433892 USP35Q9P2H5 1018 aa15.24■□□□□ 0.03
CD44-209ENST00000433892 ANKRD36BQ8N2N9 1353 aa15.24■□□□□ 0.03
CD44-209ENST00000433892 NINLQ9Y2I6 1382 aa15.24■□□□□ 0.03
CD44-209ENST00000433892 U2AF1L5P0DN76 240 aaPredicted RBP15.23■□□□□ 0.03
CD44-209ENST00000433892 U2AF1Q01081 240 aaKnown RBP eCLIP15.23■□□□□ 0.03
CD44-209ENST00000433892 WDR63Q8IWG1 891 aa15.23■□□□□ 0.03
CD44-209ENST00000433892 BCL2L13Q9BXK5 485 aa15.23■□□□□ 0.03
CD44-209ENST00000433892 DAXXQ9UER7 740 aaPredicted RBP15.23■□□□□ 0.03
CD44-209ENST00000433892 NEXMIFQ5QGS0 1516 aa15.23■□□□□ 0.03
CD44-209ENST00000433892 USP32Q8NFA0 1604 aa15.23■□□□□ 0.03
CD44-209ENST00000433892 PUS7Q96PZ0 661 aaKnown RBP15.22■□□□□ 0.03
CD44-209ENST00000433892 TNNQ9UQP3 1299 aa15.22■□□□□ 0.03
CD44-209ENST00000433892 ARHGEF28Q8N1W1 1705 aaKnown RBP15.22■□□□□ 0.03
CD44-209ENST00000433892 PIK3C2BO00750 1634 aa15.21■□□□□ 0.03
CD44-209ENST00000433892 RLBP1P12271 317 aa15.2■□□□□ 0.02
CD44-209ENST00000433892 CCDC27Q2M243 656 aa15.2■□□□□ 0.02
CD44-209ENST00000433892 SRPK2P78362 688 aaKnown RBP15.2■□□□□ 0.02
CD44-209ENST00000433892 NSD2O96028 1365 aa15.2■□□□□ 0.02
CD44-209ENST00000433892 NEO1Q92859 1461 aa15.19■□□□□ 0.02
CD44-209ENST00000433892 DIP2CQ9Y2E4 1556 aa15.19■□□□□ 0.02
CD44-209ENST00000433892 A0A1W2PP64 1363 aa15.19■□□□□ 0.02
CD44-209ENST00000433892 GGNBP2Q9H3C7 697 aa15.18■□□□□ 0.02
CD44-209ENST00000433892 MYH16Q9H6N6 1097 aa15.18■□□□□ 0.02
CD44-209ENST00000433892 PCDHB15Q9Y5E8 787 aa15.18■□□□□ 0.02
CD44-209ENST00000433892 SLC52A1Q9NWF4 448 aa15.17■□□□□ 0.02
CD44-209ENST00000433892 ARHGAP31Q2M1Z3 1444 aa15.17■□□□□ 0.02
CD44-209ENST00000433892 U2SURPO15042 1029 aaKnown RBP15.17■□□□□ 0.02
CD44-209ENST00000433892 MAPK8IP3Q9UPT6 1336 aa15.16■□□□□ 0.02
CD44-209ENST00000433892 NFKBIBQ15653 356 aa15.16■□□□□ 0.02
CD44-209ENST00000433892 MINK1Q8N4C8 1332 aaPredicted RBP15.16■□□□□ 0.02
CD44-209ENST00000433892 YEATS2Q9ULM3 1422 aa15.16■□□□□ 0.02
CD44-209ENST00000433892 PMFBP1Q8TBY8 1022 aa15.15■□□□□ 0.02
CD44-209ENST00000433892 TSR2Q969E8 191 aaKnown RBP15.15■□□□□ 0.02
CD44-209ENST00000433892 ABCC11Q96J66 1382 aa15.15■□□□□ 0.02
CD44-209ENST00000433892 SEC24BO95487 1268 aa15.15■□□□□ 0.02
CD44-209ENST00000433892 PRAM1Q96QH2 718 aa15.15■□□□□ 0.02
CD44-209ENST00000433892 ZFYVE9O95405 1425 aa15.14■□□□□ 0.01
CD44-209ENST00000433892 USP19O94966 1318 aa15.14■□□□□ 0.01
CD44-209ENST00000433892 POGKQ9P215 609 aa15.14■□□□□ 0.01
CD44-209ENST00000433892 FYB1O15117 783 aa15.13■□□□□ 0.01
CD44-209ENST00000433892 AAMPQ13685 434 aa15.13■□□□□ 0.01
CD44-209ENST00000433892 NCBP3Q53F19 620 aaKnown RBP15.13■□□□□ 0.01
CD44-209ENST00000433892 PLEKHF1Q96S99 279 aa15.13■□□□□ 0.01
CD44-209ENST00000433892 MYO5BQ9ULV0 1848 aa15.12■□□□□ 0.01
CD44-209ENST00000433892 FBXO31Q5XUX0 539 aaPredicted RBP15.12■□□□□ 0.01
CD44-209ENST00000433892 TERF2IPQ9NYB0 399 aa15.12■□□□□ 0.01
CD44-209ENST00000433892 VIRMAQ69YN4 1812 aaKnown RBP15.12■□□□□ 0.01
CD44-209ENST00000433892 TMPOP42166 694 aaKnown RBP15.12■□□□□ 0.01
CD44-209ENST00000433892 PTPRMP28827 1452 aa15.11■□□□□ 0.01
CD44-209ENST00000433892 ADGRB2O60241 1585 aa15.11■□□□□ 0.01
CD44-209ENST00000433892 RICTORQ6R327 1708 aa15.11■□□□□ 0.01
CD44-209ENST00000433892 EXOSC9Q06265 439 aaKnown RBP15.1■□□□□ 0.01
CD44-209ENST00000433892 MVPQ14764 893 aaKnown RBP15.1■□□□□ 0.01
CD44-209ENST00000433892 ZKSCAN2Q63HK3 967 aa15.1■□□□□ 0.01
CD44-209ENST00000433892 FTSJ3Q8IY81 847 aaKnown RBP15.1■□□□□ 0.01
CD44-209ENST00000433892 TRIM35Q9UPQ4 493 aa15.1■□□□□ 0.01
CD44-209ENST00000433892 PDZRN3Q9UPQ7 1066 aa15.1■□□□□ 0.01
CD44-209ENST00000433892 ATAD2Q6PL18 1390 aa15.1■□□□□ 0.01
CD44-209ENST00000433892 YTHDC2Q9H6S0 1430 aaKnown RBP15.1■□□□□ 0.01
CD44-209ENST00000433892 RWDD1Q9H446 243 aaPredicted RBP15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms