RNA–Protein interactions for RNA: ENST00000431039.1

TTC28-202, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 905 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-202ENST00000431039 IFT172Q9UG01 1749 aa24.18■■□□□ 1.46
TTC28-202ENST00000431039 CCER1Q8TC90 406 aaPredicted RBP24.16■■□□□ 1.46
TTC28-202ENST00000431039 RGS12O14924 1447 aa24.16■■□□□ 1.46
TTC28-202ENST00000431039 QTRT2Q9H974 415 aaKnown RBP24.15■■□□□ 1.46
TTC28-202ENST00000431039 CDC42BPGQ6DT37 1551 aa24.15■■□□□ 1.46
TTC28-202ENST00000431039 SOS2Q07890 1332 aaPredicted RBP24.14■■□□□ 1.46
TTC28-202ENST00000431039 ADGRF5Q8IZF2 1346 aa24.13■■□□□ 1.45
TTC28-202ENST00000431039 CCDC144AA2RUR9 1427 aa24.13■■□□□ 1.45
TTC28-202ENST00000431039 NGLY1Q96IV0 654 aa24.13■■□□□ 1.45
TTC28-202ENST00000431039 RBM6P78332 1123 aaKnown RBP24.12■■□□□ 1.45
TTC28-202ENST00000431039 COL22A1Q8NFW1 1626 aaPredicted RBP24.12■■□□□ 1.45
TTC28-202ENST00000431039 RGL3Q3MIN7 710 aa24.11■■□□□ 1.45
TTC28-202ENST00000431039 CLSPNQ9HAW4 1339 aa24.1■■□□□ 1.45
TTC28-202ENST00000431039 KNDC1Q76NI1 1749 aa24.1■■□□□ 1.45
TTC28-202ENST00000431039 STK26Q9P289 416 aa24.09■■□□□ 1.45
TTC28-202ENST00000431039 SPATA31E1Q6ZUB1 1445 aa24.09■■□□□ 1.45
TTC28-202ENST00000431039 MARF1Q9Y4F3 1742 aaKnown RBP24.08■■□□□ 1.45
TTC28-202ENST00000431039 ESCO1Q5FWF5 840 aa24.08■■□□□ 1.45
TTC28-202ENST00000431039 PXDNQ92626 1479 aa24.06■■□□□ 1.44
TTC28-202ENST00000431039 NUTM2FA1L443 756 aa24.05■■□□□ 1.44
TTC28-202ENST00000431039 WAPLQ7Z5K2 1190 aa24.05■■□□□ 1.44
TTC28-202ENST00000431039 USP21Q9UK80 565 aa24.05■■□□□ 1.44
TTC28-202ENST00000431039 NPHP3Q7Z494 1330 aa24.05■■□□□ 1.44
TTC28-202ENST00000431039 ANKRD30BQ9BXX2 1392 aa24.04■■□□□ 1.44
TTC28-202ENST00000431039 TECPR2O15040 1411 aa24.04■■□□□ 1.44
TTC28-202ENST00000431039 XPCQ01831 940 aaPredicted RBP24.04■■□□□ 1.44
TTC28-202ENST00000431039 FMN2Q9NZ56 1722 aa24.04■■□□□ 1.44
TTC28-202ENST00000431039 LRPPRCP42704 1394 aaKnown RBP24.03■■□□□ 1.44
TTC28-202ENST00000431039 MYOM2P54296 1465 aa24.03■■□□□ 1.44
TTC28-202ENST00000431039 TMEM132EQ6IEE7 984 aa24.03■■□□□ 1.44
TTC28-202ENST00000431039 PLEKHH1Q9ULM0 1364 aa24.03■■□□□ 1.44
TTC28-202ENST00000431039 PIK3C2GO75747 1445 aa24.01■■□□□ 1.43
TTC28-202ENST00000431039 FOXO3O43524 673 aa24.01■■□□□ 1.43
TTC28-202ENST00000431039 RGPD8O14715 1765 aaPredicted RBP24.01■■□□□ 1.43
TTC28-202ENST00000431039 TRPC5Q9UL62 973 aaPredicted RBP24■■□□□ 1.43
TTC28-202ENST00000431039 ABCC11Q96J66 1382 aa23.99■■□□□ 1.43
TTC28-202ENST00000431039 ATRNO75882 1429 aa23.99■■□□□ 1.43
TTC28-202ENST00000431039 KIF1AQ12756 1690 aa23.99■■□□□ 1.43
TTC28-202ENST00000431039 FNBP4Q8N3X1 1017 aaPredicted RBP23.98■■□□□ 1.43
TTC28-202ENST00000431039 YTHDC2Q9H6S0 1430 aaKnown RBP23.98■■□□□ 1.43
TTC28-202ENST00000431039 ATAD2Q6PL18 1390 aa23.95■■□□□ 1.42
TTC28-202ENST00000431039 BCL9LQ86UU0 1499 aa23.93■■□□□ 1.42
TTC28-202ENST00000431039 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.92■■□□□ 1.42
TTC28-202ENST00000431039 NRXN1Q9ULB1 1477 aa23.88■■□□□ 1.41
TTC28-202ENST00000431039 CFAP70Q5T0N1 1121 aa23.88■■□□□ 1.41
TTC28-202ENST00000431039 SIN3AQ96ST3 1273 aa23.88■■□□□ 1.41
TTC28-202ENST00000431039 C14orf93Q9H972 538 aaKnown RBP23.88■■□□□ 1.41
TTC28-202ENST00000431039 USP32Q8NFA0 1604 aa23.88■■□□□ 1.41
TTC28-202ENST00000431039 SPATA31A3Q5VYP0 1347 aa23.87■■□□□ 1.41
TTC28-202ENST00000431039 EP400Q96L91 3159 aa23.87■■□□□ 1.41
TTC28-202ENST00000431039 SAFB2Q14151 953 aaKnown RBP eCLIP23.86■■□□□ 1.41
TTC28-202ENST00000431039 KRT28Q7Z3Y7 464 aa23.86■■□□□ 1.41
TTC28-202ENST00000431039 ZEB1P37275 1124 aaPredicted RBP23.85■■□□□ 1.41
TTC28-202ENST00000431039 ABCA3Q99758 1704 aa23.84■■□□□ 1.41
TTC28-202ENST00000431039 GLI3P10071 1580 aa23.84■■□□□ 1.41
TTC28-202ENST00000431039 PLEKHG5O94827 1062 aa23.84■■□□□ 1.41
TTC28-202ENST00000431039 SIRT1Q96EB6 747 aa23.84■■□□□ 1.41
TTC28-202ENST00000431039 GJD4Q96KN9 370 aaPredicted RBP23.84■■□□□ 1.41
TTC28-202ENST00000431039 BRWD3Q6RI45 1802 aa23.83■■□□□ 1.41
TTC28-202ENST00000431039 NEUROD1Q13562 356 aa23.83■■□□□ 1.41
TTC28-202ENST00000431039 PHF8Q9UPP1 1060 aa23.83■■□□□ 1.41
TTC28-202ENST00000431039 SLIT2O94813 1529 aa23.83■■□□□ 1.41
TTC28-202ENST00000431039 TNS3Q68CZ2 1445 aa23.83■■□□□ 1.4
TTC28-202ENST00000431039 PLCH1Q4KWH8 1693 aa23.83■■□□□ 1.4
TTC28-202ENST00000431039 PRAM1Q96QH2 718 aa23.82■■□□□ 1.4
TTC28-202ENST00000431039 UNC5CLQ8IV45 518 aa23.81■■□□□ 1.4
TTC28-202ENST00000431039 TIMELESSQ9UNS1 1208 aa23.81■■□□□ 1.4
TTC28-202ENST00000431039 RALGAPBQ86X10 1494 aa23.81■■□□□ 1.4
TTC28-202ENST00000431039 HAP1P54257 671 aaPredicted RBP23.8■■□□□ 1.4
TTC28-202ENST00000431039 DLC1Q96QB1 1528 aa23.79■■□□□ 1.4
TTC28-202ENST00000431039 CABLES1Q8TDN4 633 aa23.79■■□□□ 1.4
TTC28-202ENST00000431039 PSME1Q06323 249 aa23.78■■□□□ 1.4
TTC28-202ENST00000431039 LMOD2Q6P5Q4 547 aa23.78■■□□□ 1.4
TTC28-202ENST00000431039 POGKQ9P215 609 aa23.78■■□□□ 1.4
TTC28-202ENST00000431039 NWD2Q9ULI1 1742 aa23.77■■□□□ 1.4
TTC28-202ENST00000431039 ADGRB2O60241 1585 aa23.77■■□□□ 1.4
TTC28-202ENST00000431039 ADGRB1O14514 1584 aa23.76■■□□□ 1.39
TTC28-202ENST00000431039 PMFBP1Q8TBY8 1022 aa23.75■■□□□ 1.39
TTC28-202ENST00000431039 SBNO1A3KN83 1393 aa23.75■■□□□ 1.39
TTC28-202ENST00000431039 TRPM3Q9HCF6 1732 aaPredicted RBP23.74■■□□□ 1.39
TTC28-202ENST00000431039 ANKARQ7Z5J8 1434 aa23.73■■□□□ 1.39
TTC28-202ENST00000431039 HIRIP3Q9BW71 556 aaPredicted RBP23.72■■□□□ 1.39
TTC28-202ENST00000431039 TRAK1Q9UPV9 953 aa23.72■■□□□ 1.39
TTC28-202ENST00000431039 ARHGEF10O15013 1369 aa23.72■■□□□ 1.39
TTC28-202ENST00000431039 CCDC125Q86Z20 511 aa23.71■■□□□ 1.39
TTC28-202ENST00000431039 ZRANB1Q9UGI0 708 aa23.71■■□□□ 1.39
TTC28-202ENST00000431039 KDM2AQ9Y2K7 1162 aa23.71■■□□□ 1.39
TTC28-202ENST00000431039 SRCAPQ6ZRS2 3230 aa23.71■■□□□ 1.39
TTC28-202ENST00000431039 TONSLQ96HA7 1378 aa23.7■■□□□ 1.38
TTC28-202ENST00000431039 MINK1Q8N4C8 1332 aaPredicted RBP23.7■■□□□ 1.38
TTC28-202ENST00000431039 CCDC9Q9Y3X0 531 aaKnown RBP23.7■■□□□ 1.38
TTC28-202ENST00000431039 ALS2Q96Q42 1657 aa23.7■■□□□ 1.38
TTC28-202ENST00000431039 NRAPQ86VF7 1730 aa23.69■■□□□ 1.38
TTC28-202ENST00000431039 VPS72Q15906 364 aa23.68■■□□□ 1.38
TTC28-202ENST00000431039 SEPT12Q8IYM1 358 aa23.67■■□□□ 1.38
TTC28-202ENST00000431039 DCAF11Q8TEB1 546 aa23.67■■□□□ 1.38
TTC28-202ENST00000431039 TULP4Q9NRJ4 1543 aa23.67■■□□□ 1.38
TTC28-202ENST00000431039 BLMP54132 1417 aaPredicted RBP23.67■■□□□ 1.38
TTC28-202ENST00000431039 L3MBTL2Q969R5 705 aa23.66■■□□□ 1.38
TTC28-202ENST00000431039 ARHGEF28Q8N1W1 1705 aaKnown RBP23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms