RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 CSPP1Q1MSJ5 1256 aa16.08■□□□□ 0.16
SPG11-202ENST00000427534 CCDC85AQ96PX6 553 aaPredicted RBP16.08■□□□□ 0.16
SPG11-202ENST00000427534 GOLGA6L19H0YKK7 550 aa16.07■□□□□ 0.16
SPG11-202ENST00000427534 NAP1L1P55209 391 aaKnown RBP16.07■□□□□ 0.16
SPG11-202ENST00000427534 BECN2A8MW95 431 aa16.07■□□□□ 0.16
SPG11-202ENST00000427534 MYL6BP14649 208 aa16.07■□□□□ 0.16
SPG11-202ENST00000427534 FGD6Q6ZV73 1430 aa16.07■□□□□ 0.16
SPG11-202ENST00000427534 TRDNQ13061 729 aa16.07■□□□□ 0.16
SPG11-202ENST00000427534 DDX58O95786 925 aaKnown RBP16.07■□□□□ 0.16
SPG11-202ENST00000427534 CHMP4BP1P59074 171 aa16.06■□□□□ 0.16
SPG11-202ENST00000427534 SKIDA1Q1XH10 827 aa16.06■□□□□ 0.16
SPG11-202ENST00000427534 LNPKQ9C0E8 428 aa16.06■□□□□ 0.16
SPG11-202ENST00000427534 ZFYVE27Q5T4F4 411 aa16.06■□□□□ 0.16
SPG11-202ENST00000427534 ZBED9Q6R2W3 1325 aa16.06■□□□□ 0.16
SPG11-202ENST00000427534 TTLL5Q6EMB2 1281 aa16.06■□□□□ 0.16
SPG11-202ENST00000427534 SIL1Q9H173 461 aa16.06■□□□□ 0.16
SPG11-202ENST00000427534 TPM2P07951 284 aa16.06■□□□□ 0.16
SPG11-202ENST00000427534 DDX49Q9Y6V7 483 aaKnown RBP16.06■□□□□ 0.16
SPG11-202ENST00000427534 E9PSI1 815 aa16.05■□□□□ 0.16
SPG11-202ENST00000427534 BICD2Q8TD16 824 aa16.05■□□□□ 0.16
SPG11-202ENST00000427534 ZNF219Q9P2Y4 722 aaPredicted RBP16.04■□□□□ 0.16
SPG11-202ENST00000427534 PANK1Q8TE04 598 aa16.04■□□□□ 0.16
SPG11-202ENST00000427534 RRP1P56182 461 aaKnown RBP16.04■□□□□ 0.16
SPG11-202ENST00000427534 TOM1L2Q6ZVM7 507 aa16.04■□□□□ 0.16
SPG11-202ENST00000427534 PIBF1Q8WXW3 757 aa16.03■□□□□ 0.16
SPG11-202ENST00000427534 KIF21BO75037 1637 aa16.03■□□□□ 0.16
SPG11-202ENST00000427534 CENPQQ7L2Z9 268 aaPredicted RBP16.03■□□□□ 0.16
SPG11-202ENST00000427534 MYCNP04198 464 aaPredicted RBP16.01■□□□□ 0.15
SPG11-202ENST00000427534 KIF3AQ9Y496 699 aa16.01■□□□□ 0.15
SPG11-202ENST00000427534 KIF6Q6ZMV9 814 aa16.01■□□□□ 0.15
SPG11-202ENST00000427534 AFAP1Q8N556 730 aa16.01■□□□□ 0.15
SPG11-202ENST00000427534 CEBPZQ03701 1054 aaKnown RBP16.01■□□□□ 0.15
SPG11-202ENST00000427534 CUX1P39880 1505 aa16■□□□□ 0.15
SPG11-202ENST00000427534 TNNT3P45378 269 aaPredicted RBP16■□□□□ 0.15
SPG11-202ENST00000427534 PAF1Q8N7H5 531 aa16■□□□□ 0.15
SPG11-202ENST00000427534 ZKSCAN1P17029 563 aaPredicted RBP15.99■□□□□ 0.15
SPG11-202ENST00000427534 SLC26A8Q96RN1 970 aa15.99■□□□□ 0.15
SPG11-202ENST00000427534 CNNM1Q9NRU3 951 aa15.99■□□□□ 0.15
SPG11-202ENST00000427534 WWC3Q9ULE0 1092 aa15.99■□□□□ 0.15
SPG11-202ENST00000427534 LRRC9Q6ZRR7 1453 aa15.99■□□□□ 0.15
SPG11-202ENST00000427534 NCAPD3P42695 1498 aa15.99■□□□□ 0.15
SPG11-202ENST00000427534 PAXIP1Q6ZW49 1069 aaPredicted RBP15.98■□□□□ 0.15
SPG11-202ENST00000427534 AQRO60306 1485 aaKnown RBP eCLIP15.98■□□□□ 0.158e-7■■■■□ 22.4
SPG11-202ENST00000427534 CT47A1Q5JQC4 288 aaPredicted RBP15.98■□□□□ 0.15
SPG11-202ENST00000427534 DZIP1LQ8IYY4 767 aaKnown RBP15.98■□□□□ 0.15
SPG11-202ENST00000427534 PDE4AP27815 886 aa15.97■□□□□ 0.15
SPG11-202ENST00000427534 ADAMTS2O95450 1211 aa15.97■□□□□ 0.15
SPG11-202ENST00000427534 KIF7Q2M1P5 1343 aa15.97■□□□□ 0.15
SPG11-202ENST00000427534 CPLX2Q6PUV4 134 aaKnown RBP15.97■□□□□ 0.15
SPG11-202ENST00000427534 RUFY2Q8WXA3 655 aa15.97■□□□□ 0.15
SPG11-202ENST00000427534 PRAM1Q96QH2 718 aa15.97■□□□□ 0.15
SPG11-202ENST00000427534 CCDC7Q96M83 1385 aa15.97■□□□□ 0.15
SPG11-202ENST00000427534 UBTFL1P0CB47 393 aaPredicted RBP15.96■□□□□ 0.15
SPG11-202ENST00000427534 PHF14O94880 888 aa15.96■□□□□ 0.15
SPG11-202ENST00000427534 RALYLQ86SE5 291 aaKnown RBP15.96■□□□□ 0.15
SPG11-202ENST00000427534 FSD1Q9BTV5 496 aa15.96■□□□□ 0.15
SPG11-202ENST00000427534 STK3Q13188 491 aa15.96■□□□□ 0.15
SPG11-202ENST00000427534 ECM2O94769 699 aaPredicted RBP15.96■□□□□ 0.15
SPG11-202ENST00000427534 CASKIN1Q8WXD9 1431 aa15.96■□□□□ 0.14
SPG11-202ENST00000427534 TPM1P09493 284 aa15.95■□□□□ 0.14
SPG11-202ENST00000427534 CABP4P57796 275 aa15.95■□□□□ 0.14
SPG11-202ENST00000427534 ZC3H6P61129 1189 aaKnown RBP15.95■□□□□ 0.14
SPG11-202ENST00000427534 PDILTQ8N807 584 aa15.95■□□□□ 0.14
SPG11-202ENST00000427534 R3HCC1Q9Y3T6 440 aaKnown RBP15.95■□□□□ 0.14
SPG11-202ENST00000427534 EPS15P42566 896 aa15.95■□□□□ 0.14
SPG11-202ENST00000427534 TTC39AQ5SRH9 613 aa15.95■□□□□ 0.14
SPG11-202ENST00000427534 NCOA2Q15596 1464 aa15.95■□□□□ 0.14
SPG11-202ENST00000427534 ODF2Q5BJF6 829 aa15.94■□□□□ 0.14
SPG11-202ENST00000427534 ANKRD50Q9ULJ7 1429 aa15.94■□□□□ 0.14
SPG11-202ENST00000427534 LRRFIP1Q32MZ4 808 aaKnown RBP15.94■□□□□ 0.14
SPG11-202ENST00000427534 BRPF1P55201 1214 aaPredicted RBP15.94■□□□□ 0.14
SPG11-202ENST00000427534 CFAP70Q5T0N1 1121 aa15.94■□□□□ 0.14
SPG11-202ENST00000427534 ZSCAN29Q8IWY8 852 aaPredicted RBP15.94■□□□□ 0.14
SPG11-202ENST00000427534 HOMER1Q86YM7 354 aa15.93■□□□□ 0.14
SPG11-202ENST00000427534 ZHX3Q9H4I2 956 aa15.93■□□□□ 0.14
SPG11-202ENST00000427534 SMC3Q9UQE7 1217 aa15.93■□□□□ 0.14
SPG11-202ENST00000427534 FYCO1Q9BQS8 1478 aa15.93■□□□□ 0.14
SPG11-202ENST00000427534 RRS1Q15050 365 aaKnown RBP15.93■□□□□ 0.14
SPG11-202ENST00000427534 STAC3Q96MF2 364 aa15.92■□□□□ 0.14
SPG11-202ENST00000427534 MTHFSP49914 203 aa15.92■□□□□ 0.14
SPG11-202ENST00000427534 DHX37Q8IY37 1157 aaKnown RBP15.92■□□□□ 0.14
SPG11-202ENST00000427534 TSR2Q969E8 191 aaKnown RBP15.92■□□□□ 0.14
SPG11-202ENST00000427534 CCDC47Q96A33 483 aaKnown RBP15.92■□□□□ 0.14
SPG11-202ENST00000427534 GPRASP1Q5JY77 1395 aa15.92■□□□□ 0.14
SPG11-202ENST00000427534 SURF6O75683 361 aaKnown RBP15.91■□□□□ 0.14
SPG11-202ENST00000427534 RUNDC1Q96C34 613 aa15.91■□□□□ 0.14
SPG11-202ENST00000427534 MIS18AQ9NYP9 233 aa15.91■□□□□ 0.14
SPG11-202ENST00000427534 ARHGAP5Q13017 1502 aa15.9■□□□□ 0.14
SPG11-202ENST00000427534 DDX19BQ9UMR2 479 aa15.9■□□□□ 0.14
SPG11-202ENST00000427534 RAPGEF3O95398 923 aa15.9■□□□□ 0.14
SPG11-202ENST00000427534 GRM1Q13255 1194 aa15.9■□□□□ 0.14
SPG11-202ENST00000427534 HSP90AB2PQ58FF8 381 aa15.9■□□□□ 0.14
SPG11-202ENST00000427534 CNTLNQ9NXG0 1405 aa15.9■□□□□ 0.14
SPG11-202ENST00000427534 PRKAR2BP31323 418 aa15.89■□□□□ 0.13
SPG11-202ENST00000427534 VSIG10Q8N0Z9 540 aa15.89■□□□□ 0.13
SPG11-202ENST00000427534 FMNL2Q96PY5 1086 aa15.89■□□□□ 0.13
SPG11-202ENST00000427534 RNF20Q5VTR2 975 aa15.89■□□□□ 0.13
SPG11-202ENST00000427534 SLC4A8Q2Y0W8 1093 aa15.89■□□□□ 0.13
SPG11-202ENST00000427534 MIA2Q96PC5 1412 aa15.88■□□□□ 0.13
SPG11-202ENST00000427534 SAFBQ15424 915 aaKnown RBP eCLIP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 166.7 ms