RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 ATF3P18847 181 aa34.8■■■■□ 3.16
VEGFA-209ENST00000425836 CADPS2Q86UW7 1296 aa34.8■■■■□ 3.16
VEGFA-209ENST00000425836 FBXO41Q8TF61 875 aa34.79■■■■□ 3.16
VEGFA-209ENST00000425836 DCCP43146 1447 aa34.77■■■■□ 3.16
VEGFA-209ENST00000425836 NALCNQ8IZF0 1738 aa34.76■■■■□ 3.16
VEGFA-209ENST00000425836 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.76■■■■□ 3.16
VEGFA-209ENST00000425836 ARHGEF28Q8N1W1 1705 aaKnown RBP34.75■■■■□ 3.15
VEGFA-209ENST00000425836 SLAIN2Q9P270 581 aa34.74■■■■□ 3.15
VEGFA-209ENST00000425836 MINK1Q8N4C8 1332 aaPredicted RBP34.73■■■■□ 3.15
VEGFA-209ENST00000425836 CENPJQ9HC77 1338 aaPredicted RBP34.73■■■■□ 3.15
VEGFA-209ENST00000425836 PIP4K2BP78356 416 aa34.72■■■■□ 3.15
VEGFA-209ENST00000425836 HIRIP3Q9BW71 556 aaPredicted RBP34.7■■■■□ 3.15
VEGFA-209ENST00000425836 EIF3AQ14152 1382 aaKnown RBP34.69■■■■□ 3.14
VEGFA-209ENST00000425836 SCAF1Q9H7N4 1312 aaKnown RBP34.66■■■■□ 3.14
VEGFA-209ENST00000425836 CDC42BPGQ6DT37 1551 aa34.66■■■■□ 3.14
VEGFA-209ENST00000425836 MST1RQ04912 1400 aa34.66■■■■□ 3.14
VEGFA-209ENST00000425836 WASLO00401 505 aaPredicted RBP34.61■■■■□ 3.13
VEGFA-209ENST00000425836 ADGRB2O60241 1585 aa34.6■■■■□ 3.13
VEGFA-209ENST00000425836 NUTM2FA1L443 756 aa34.6■■■■□ 3.13
VEGFA-209ENST00000425836 C1orf167Q5SNV9 1468 aa34.6■■■■□ 3.13
VEGFA-209ENST00000425836 USP47Q96K76 1375 aa34.58■■■■□ 3.13
VEGFA-209ENST00000425836 ST20-MTHFSA0A0A6YYL1 179 aa34.57■■■■□ 3.12
VEGFA-209ENST00000425836 ILDR1Q86SU0 546 aaPredicted RBP34.56■■■■□ 3.12
VEGFA-209ENST00000425836 BRINP3Q76B58 766 aa34.55■■■■□ 3.12
VEGFA-209ENST00000425836 CDK19Q9BWU1 502 aa34.55■■■■□ 3.12
VEGFA-209ENST00000425836 ORAI2Q96SN7 254 aa34.53■■■■□ 3.12
VEGFA-209ENST00000425836 QRICH2Q9H0J4 1663 aa34.53■■■■□ 3.12
VEGFA-209ENST00000425836 SBNO2Q9Y2G9 1366 aa34.51■■■■□ 3.12
VEGFA-209ENST00000425836 FMN2Q9NZ56 1722 aa34.51■■■■□ 3.12
VEGFA-209ENST00000425836 ESCO1Q5FWF5 840 aa34.5■■■■□ 3.11
VEGFA-209ENST00000425836 TESK2Q96S53 571 aa34.49■■■■□ 3.11
VEGFA-209ENST00000425836 PRR36Q9H6K5 1346 aa34.49■■■■□ 3.11
VEGFA-209ENST00000425836 ROBO1Q9Y6N7 1651 aa34.48■■■■□ 3.11
VEGFA-209ENST00000425836 EVC2Q86UK5 1308 aa34.48■■■■□ 3.11
VEGFA-209ENST00000425836 ANKARQ7Z5J8 1434 aa34.48■■■■□ 3.11
VEGFA-209ENST00000425836 TULP4Q9NRJ4 1543 aa34.46■■■■□ 3.11
VEGFA-209ENST00000425836 SRPK2P78362 688 aaKnown RBP34.45■■■■□ 3.11
VEGFA-209ENST00000425836 NUDT16Q96DE0 195 aaKnown RBP34.45■■■■□ 3.11
VEGFA-209ENST00000425836 EIF4G2P78344 907 aaKnown RBP eCLIP34.45■■■■□ 3.1
VEGFA-209ENST00000425836 CABP2Q9NPB3 220 aa34.45■■■■□ 3.1
VEGFA-209ENST00000425836 HSPA1LP34931 641 aa34.44■■■■□ 3.1
VEGFA-209ENST00000425836 USP32Q8NFA0 1604 aa34.41■■■■□ 3.1
VEGFA-209ENST00000425836 HSPA5P11021 654 aaKnown RBP34.4■■■■□ 3.1
VEGFA-209ENST00000425836 ATP7BP35670 1465 aa34.4■■■■□ 3.1
VEGFA-209ENST00000425836 PHF8Q9UPP1 1060 aa34.4■■■■□ 3.1
VEGFA-209ENST00000425836 DDX17Q92841 729 aaKnown RBP34.39■■■■□ 3.1
VEGFA-209ENST00000425836 SLC24A1O60721 1099 aa34.38■■■■□ 3.09
VEGFA-209ENST00000425836 CCDC61Q9Y6R9 512 aa34.38■■■■□ 3.09
VEGFA-209ENST00000425836 PMFBP1Q8TBY8 1022 aa34.36■■■■□ 3.09
VEGFA-209ENST00000425836 FOXO3O43524 673 aa34.35■■■■□ 3.09
VEGFA-209ENST00000425836 ZEB1P37275 1124 aaPredicted RBP34.32■■■■□ 3.09
VEGFA-209ENST00000425836 AHDC1Q5TGY3 1603 aaPredicted RBP34.32■■■■□ 3.08
VEGFA-209ENST00000425836 TMF1P82094 1093 aa34.32■■■■□ 3.08
VEGFA-209ENST00000425836 RGPD8O14715 1765 aaPredicted RBP34.31■■■■□ 3.08
VEGFA-209ENST00000425836 NPHP3Q7Z494 1330 aa34.31■■■■□ 3.08
VEGFA-209ENST00000425836 DISP3Q9P2K9 1392 aa34.3■■■■□ 3.08
VEGFA-209ENST00000425836 PLEKHG3A1L390 1219 aa34.29■■■■□ 3.08
VEGFA-209ENST00000425836 PUS7Q96PZ0 661 aaKnown RBP34.29■■■■□ 3.08
VEGFA-209ENST00000425836 CABP1Q9NZU7 370 aa34.28■■■■□ 3.08
VEGFA-209ENST00000425836 SOS2Q07890 1332 aaPredicted RBP34.27■■■■□ 3.08
VEGFA-209ENST00000425836 ATAD2Q6PL18 1390 aa34.27■■■■□ 3.08
VEGFA-209ENST00000425836 PPIP5K1Q6PFW1 1433 aa34.27■■■■□ 3.08
VEGFA-209ENST00000425836 KIF1AQ12756 1690 aa34.26■■■■□ 3.08
VEGFA-209ENST00000425836 NHSL1Q5SYE7 1610 aa34.26■■■■□ 3.08
VEGFA-209ENST00000425836 XPCQ01831 940 aaPredicted RBP34.26■■■■□ 3.07
VEGFA-209ENST00000425836 NGDNQ8NEJ9 315 aaKnown RBP34.26■■■■□ 3.07
VEGFA-209ENST00000425836 PHLPP1O60346 1717 aa34.23■■■■□ 3.07
VEGFA-209ENST00000425836 PSME1Q06323 249 aa34.23■■■■□ 3.07
VEGFA-209ENST00000425836 KRT28Q7Z3Y7 464 aa34.23■■■■□ 3.07
VEGFA-209ENST00000425836 TOPAZ1Q8N9V7 1692 aa34.22■■■■□ 3.07
VEGFA-209ENST00000425836 ACEP12821 1306 aa34.22■■■■□ 3.07
VEGFA-209ENST00000425836 PXDNQ92626 1479 aa34.21■■■■□ 3.07
VEGFA-209ENST00000425836 COL16A1Q07092 1604 aaPredicted RBP34.21■■■■□ 3.07
VEGFA-209ENST00000425836 POLR3AO14802 1390 aaPredicted RBP34.21■■■■□ 3.07
VEGFA-209ENST00000425836 CDCA8Q53HL2 280 aa34.2■■■■□ 3.07
VEGFA-209ENST00000425836 ITSN1Q15811 1721 aa34.2■■■■□ 3.06
VEGFA-209ENST00000425836 LRRC59Q96AG4 307 aaKnown RBP34.19■■■■□ 3.06
VEGFA-209ENST00000425836 TMC1Q8TDI8 760 aa34.16■■■■□ 3.06
VEGFA-209ENST00000425836 SLC12A5Q9H2X9 1139 aa34.16■■■■□ 3.06
VEGFA-209ENST00000425836 JCADQ9P266 1359 aa34.12■■■■□ 3.05
VEGFA-209ENST00000425836 C11orf95C9JLR9 678 aaPredicted RBP34.12■■■■□ 3.05
VEGFA-209ENST00000425836 SBNO1A3KN83 1393 aa34.11■■■■□ 3.05
VEGFA-209ENST00000425836 SPATA31A3Q5VYP0 1347 aa34.1■■■■□ 3.05
VEGFA-209ENST00000425836 ZNF692Q9BU19 519 aaPredicted RBP34.08■■■■□ 3.05
VEGFA-209ENST00000425836 NINLQ9Y2I6 1382 aa34.08■■■■□ 3.05
VEGFA-209ENST00000425836 CPSF1Q10570 1443 aaKnown RBP34.07■■■■□ 3.04
VEGFA-209ENST00000425836 PNPLA6Q8IY17 1366 aa34.06■■■■□ 3.04
VEGFA-209ENST00000425836 POLR3GLQ9BT43 218 aa34.06■■■■□ 3.04
VEGFA-209ENST00000425836 CD163L1Q9NR16 1453 aa34.05■■■■□ 3.04
VEGFA-209ENST00000425836 PAK3O75914 559 aaPredicted RBP34.05■■■■□ 3.04
VEGFA-209ENST00000425836 USP6P35125 1406 aa34.04■■■■□ 3.04
VEGFA-209ENST00000425836 TNS3Q68CZ2 1445 aa34.04■■■■□ 3.04
VEGFA-209ENST00000425836 TERF2IPQ9NYB0 399 aa34.03■■■■□ 3.04
VEGFA-209ENST00000425836 HDGFL2Q7Z4V5 671 aaPredicted RBP34.02■■■■□ 3.04
VEGFA-209ENST00000425836 LMOD2Q6P5Q4 547 aa34.02■■■■□ 3.04
VEGFA-209ENST00000425836 BRD4O60885 1362 aaPredicted RBP34■■■■□ 3.03
VEGFA-209ENST00000425836 KTN1Q86UP2 1357 aaKnown RBP34■■■■□ 3.03
VEGFA-209ENST00000425836 TRPM3Q9HCF6 1732 aaPredicted RBP34■■■■□ 3.03
VEGFA-209ENST00000425836 KIF7Q2M1P5 1343 aa33.99■■■■□ 3.03
VEGFA-209ENST00000425836 SSH2Q76I76 1423 aa33.99■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms