RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 KIF1BO60333 1816 aa25.49■■□□□ 1.67
CHCHD3-202ENST00000423635 HFM1A2PYH4 1435 aa25.48■■□□□ 1.67
CHCHD3-202ENST00000423635 MYOM2P54296 1465 aa25.46■■□□□ 1.67
CHCHD3-202ENST00000423635 NPHP3Q7Z494 1330 aa25.45■■□□□ 1.67
CHCHD3-202ENST00000423635 BCL9LQ86UU0 1499 aa25.45■■□□□ 1.67
CHCHD3-202ENST00000423635 EP400Q96L91 3159 aa25.45■■□□□ 1.66
CHCHD3-202ENST00000423635 ESCO1Q5FWF5 840 aa25.43■■□□□ 1.66
CHCHD3-202ENST00000423635 GJD4Q96KN9 370 aaPredicted RBP25.42■■□□□ 1.66
CHCHD3-202ENST00000423635 PXDNQ92626 1479 aa25.39■■□□□ 1.66
CHCHD3-202ENST00000423635 FOXO3O43524 673 aa25.39■■□□□ 1.66
CHCHD3-202ENST00000423635 NAIPQ13075 1403 aa25.39■■□□□ 1.66
CHCHD3-202ENST00000423635 CDC42BPGQ6DT37 1551 aa25.37■■□□□ 1.65
CHCHD3-202ENST00000423635 LRPPRCP42704 1394 aaKnown RBP25.37■■□□□ 1.65
CHCHD3-202ENST00000423635 PPARGC1BQ86YN6 1023 aaKnown RBP25.36■■□□□ 1.65
CHCHD3-202ENST00000423635 MARF1Q9Y4F3 1742 aaKnown RBP25.34■■□□□ 1.65
CHCHD3-202ENST00000423635 XPCQ01831 940 aaPredicted RBP25.34■■□□□ 1.65
CHCHD3-202ENST00000423635 UNC5CLQ8IV45 518 aa25.33■■□□□ 1.64
CHCHD3-202ENST00000423635 PPLO60437 1756 aa25.33■■□□□ 1.64
CHCHD3-202ENST00000423635 WAPLQ7Z5K2 1190 aa25.3■■□□□ 1.64
CHCHD3-202ENST00000423635 SLC4A1APQ9BWU0 796 aaKnown RBP25.3■■□□□ 1.64
CHCHD3-202ENST00000423635 TECPR2O15040 1411 aa25.3■■□□□ 1.64
CHCHD3-202ENST00000423635 SLIT2O94813 1529 aa25.29■■□□□ 1.64
CHCHD3-202ENST00000423635 BLMP54132 1417 aaPredicted RBP25.29■■□□□ 1.64
CHCHD3-202ENST00000423635 RRBP1Q9P2E9 1410 aaKnown RBP25.29■■□□□ 1.64
CHCHD3-202ENST00000423635 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.28■■□□□ 1.64
CHCHD3-202ENST00000423635 SPATA31A3Q5VYP0 1347 aa25.28■■□□□ 1.64
CHCHD3-202ENST00000423635 ADGRF5Q8IZF2 1346 aa25.28■■□□□ 1.64
CHCHD3-202ENST00000423635 RALGAPBQ86X10 1494 aa25.27■■□□□ 1.64
CHCHD3-202ENST00000423635 NUTM2FA1L443 756 aa25.27■■□□□ 1.64
CHCHD3-202ENST00000423635 ABCC11Q96J66 1382 aa25.26■■□□□ 1.63
CHCHD3-202ENST00000423635 GLI3P10071 1580 aa25.25■■□□□ 1.63
CHCHD3-202ENST00000423635 STK26Q9P289 416 aa25.25■■□□□ 1.63
CHCHD3-202ENST00000423635 ONECUT3O60422 494 aaPredicted RBP25.22■■□□□ 1.63
CHCHD3-202ENST00000423635 KRT28Q7Z3Y7 464 aa25.22■■□□□ 1.63
CHCHD3-202ENST00000423635 DEFB132Q7Z7B7 95 aa25.21■■□□□ 1.63
CHCHD3-202ENST00000423635 PLEKHH1Q9ULM0 1364 aa25.21■■□□□ 1.63
CHCHD3-202ENST00000423635 SEPT12Q8IYM1 358 aa25.2■■□□□ 1.62
CHCHD3-202ENST00000423635 SIRT1Q96EB6 747 aa25.2■■□□□ 1.62
CHCHD3-202ENST00000423635 CCDC144AA2RUR9 1427 aa25.2■■□□□ 1.62
CHCHD3-202ENST00000423635 ANKRD30BQ9BXX2 1392 aa25.2■■□□□ 1.62
CHCHD3-202ENST00000423635 VPS72Q15906 364 aa25.19■■□□□ 1.62
CHCHD3-202ENST00000423635 TMEM132EQ6IEE7 984 aa25.19■■□□□ 1.62
CHCHD3-202ENST00000423635 SPATA31E1Q6ZUB1 1445 aa25.17■■□□□ 1.62
CHCHD3-202ENST00000423635 SF3B2Q13435 895 aaKnown RBP25.17■■□□□ 1.62
CHCHD3-202ENST00000423635 RGL3Q3MIN7 710 aa25.17■■□□□ 1.62
CHCHD3-202ENST00000423635 USP32Q8NFA0 1604 aa25.16■■□□□ 1.62
CHCHD3-202ENST00000423635 FMN2Q9NZ56 1722 aa25.16■■□□□ 1.62
CHCHD3-202ENST00000423635 KIF1AQ12756 1690 aa25.16■■□□□ 1.62
CHCHD3-202ENST00000423635 BRWD3Q6RI45 1802 aa25.16■■□□□ 1.62
CHCHD3-202ENST00000423635 PSME1Q06323 249 aa25.15■■□□□ 1.62
CHCHD3-202ENST00000423635 KNDC1Q76NI1 1749 aa25.15■■□□□ 1.62
CHCHD3-202ENST00000423635 PHF8Q9UPP1 1060 aa25.13■■□□□ 1.61
CHCHD3-202ENST00000423635 YTHDC2Q9H6S0 1430 aaKnown RBP25.13■■□□□ 1.61
CHCHD3-202ENST00000423635 PIK3C2GO75747 1445 aa25.12■■□□□ 1.61
CHCHD3-202ENST00000423635 TNS3Q68CZ2 1445 aa25.12■■□□□ 1.61
CHCHD3-202ENST00000423635 HAP1P54257 671 aaPredicted RBP25.12■■□□□ 1.61
CHCHD3-202ENST00000423635 KRT27Q7Z3Y8 459 aa25.12■■□□□ 1.61
CHCHD3-202ENST00000423635 CABLES1Q8TDN4 633 aa25.12■■□□□ 1.61
CHCHD3-202ENST00000423635 SBNO1A3KN83 1393 aa25.11■■□□□ 1.61
CHCHD3-202ENST00000423635 IFT172Q9UG01 1749 aa25.1■■□□□ 1.61
CHCHD3-202ENST00000423635 C14orf93Q9H972 538 aaKnown RBP25.09■■□□□ 1.61
CHCHD3-202ENST00000423635 NWD2Q9ULI1 1742 aa25.08■■□□□ 1.61
CHCHD3-202ENST00000423635 FAM83GA6ND36 823 aa25.08■■□□□ 1.6
CHCHD3-202ENST00000423635 CCDC9Q9Y3X0 531 aaKnown RBP25.08■■□□□ 1.6
CHCHD3-202ENST00000423635 ARHGEF10O15013 1369 aa25.06■■□□□ 1.6
CHCHD3-202ENST00000423635 NRXN1Q9ULB1 1477 aa25.06■■□□□ 1.6
CHCHD3-202ENST00000423635 LRP5O75197 1615 aa25.06■■□□□ 1.6
CHCHD3-202ENST00000423635 MPHOSPH9Q99550 1183 aa25.06■■□□□ 1.6
CHCHD3-202ENST00000423635 RGPD8O14715 1765 aaPredicted RBP25.04■■□□□ 1.6
CHCHD3-202ENST00000423635 PLCH1Q4KWH8 1693 aa25.04■■□□□ 1.6
CHCHD3-202ENST00000423635 BAG6P46379 1132 aa25.03■■□□□ 1.6
CHCHD3-202ENST00000423635 DHX57Q6P158 1386 aaKnown RBP25.02■■□□□ 1.6
CHCHD3-202ENST00000423635 LMOD2Q6P5Q4 547 aa25.02■■□□□ 1.6
CHCHD3-202ENST00000423635 PLEKHG5O94827 1062 aa25.01■■□□□ 1.59
CHCHD3-202ENST00000423635 HRCP23327 699 aa25■■□□□ 1.59
CHCHD3-202ENST00000423635 CFAP70Q5T0N1 1121 aa24.99■■□□□ 1.59
CHCHD3-202ENST00000423635 PRAM1Q96QH2 718 aa24.99■■□□□ 1.59
CHCHD3-202ENST00000423635 PSDA5PKW4 1024 aaPredicted RBP24.98■■□□□ 1.59
CHCHD3-202ENST00000423635 FAM98CQ17RN3 349 aaKnown RBP24.98■■□□□ 1.59
CHCHD3-202ENST00000423635 ABCA3Q99758 1704 aa24.98■■□□□ 1.59
CHCHD3-202ENST00000423635 PMFBP1Q8TBY8 1022 aa24.97■■□□□ 1.59
CHCHD3-202ENST00000423635 BTG4Q9NY30 223 aa24.97■■□□□ 1.59
CHCHD3-202ENST00000423635 ANKARQ7Z5J8 1434 aa24.97■■□□□ 1.59
CHCHD3-202ENST00000423635 A0A0G2JS52 829 aa24.95■■□□□ 1.58
CHCHD3-202ENST00000423635 MYT1Q01538 1121 aa24.95■■□□□ 1.58
CHCHD3-202ENST00000423635 SAFB2Q14151 953 aaKnown RBP eCLIP24.95■■□□□ 1.584e-6■■■■□ 19.9
CHCHD3-202ENST00000423635 EN1Q05925 392 aaPredicted RBP24.93■■□□□ 1.58
CHCHD3-202ENST00000423635 NRAPQ86VF7 1730 aa24.93■■□□□ 1.58
CHCHD3-202ENST00000423635 POGKQ9P215 609 aa24.92■■□□□ 1.58
CHCHD3-202ENST00000423635 DLC1Q96QB1 1528 aa24.92■■□□□ 1.58
CHCHD3-202ENST00000423635 SPATA31A5Q5VU36 1347 aa24.91■■□□□ 1.58
CHCHD3-202ENST00000423635 SPATA31A7Q8IWB4 1347 aa24.91■■□□□ 1.58
CHCHD3-202ENST00000423635 DISP2A7MBM2 1401 aa24.89■■□□□ 1.58
CHCHD3-202ENST00000423635 TRPM3Q9HCF6 1732 aaPredicted RBP24.89■■□□□ 1.57
CHCHD3-202ENST00000423635 GPRASP1Q5JY77 1395 aa24.89■■□□□ 1.57
CHCHD3-202ENST00000423635 COL14A1Q05707 1796 aaKnown RBP24.88■■□□□ 1.57
CHCHD3-202ENST00000423635 FAM182BQ5T319 152 aa24.87■■□□□ 1.57
CHCHD3-202ENST00000423635 ADGRB2O60241 1585 aa24.87■■□□□ 1.57
CHCHD3-202ENST00000423635 ACIN1Q9UKV3 1341 aaKnown RBP24.87■■□□□ 1.57
CHCHD3-202ENST00000423635 ALS2Q96Q42 1657 aa24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms