RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 ABCC11Q96J66 1382 aa31.37■■■□□ 2.61
PTPN4-202ENST00000420482 CDC42BPGQ6DT37 1551 aa31.36■■■□□ 2.61
PTPN4-202ENST00000420482 MYOM2P54296 1465 aa31.35■■■□□ 2.61
PTPN4-202ENST00000420482 KNDC1Q76NI1 1749 aa31.35■■■□□ 2.61
PTPN4-202ENST00000420482 TMEM132EQ6IEE7 984 aa31.34■■■□□ 2.61
PTPN4-202ENST00000420482 AFF2P51816 1311 aa31.33■■■□□ 2.61
PTPN4-202ENST00000420482 DDX17Q92841 729 aaKnown RBP31.33■■■□□ 2.61
PTPN4-202ENST00000420482 ORAI2Q96SN7 254 aa31.33■■■□□ 2.61
PTPN4-202ENST00000420482 YTHDC2Q9H6S0 1430 aaKnown RBP31.32■■■□□ 2.61
PTPN4-202ENST00000420482 RXRBP28702 533 aa31.32■■■□□ 2.6
PTPN4-202ENST00000420482 C14orf93Q9H972 538 aaKnown RBP31.32■■■□□ 2.6
PTPN4-202ENST00000420482 DHX57Q6P158 1386 aaKnown RBP31.3■■■□□ 2.6
PTPN4-202ENST00000420482 NRXN1Q9ULB1 1477 aa31.3■■■□□ 2.6
PTPN4-202ENST00000420482 WAPLQ7Z5K2 1190 aa31.3■■■□□ 2.6
PTPN4-202ENST00000420482 ESCO1Q5FWF5 840 aa31.29■■■□□ 2.6
PTPN4-202ENST00000420482 UPF1Q92900 1129 aaKnown RBP eCLIP31.28■■■□□ 2.6
PTPN4-202ENST00000420482 SIRT1Q96EB6 747 aa31.28■■■□□ 2.6
PTPN4-202ENST00000420482 SOS2Q07890 1332 aaPredicted RBP31.27■■■□□ 2.6
PTPN4-202ENST00000420482 NPHP3Q7Z494 1330 aa31.27■■■□□ 2.6
PTPN4-202ENST00000420482 COL22A1Q8NFW1 1626 aaPredicted RBP31.25■■■□□ 2.59
PTPN4-202ENST00000420482 CFAP70Q5T0N1 1121 aa31.24■■■□□ 2.59
PTPN4-202ENST00000420482 STAC3Q96MF2 364 aa31.24■■■□□ 2.59
PTPN4-202ENST00000420482 C8orf37Q96NL8 207 aa31.22■■■□□ 2.59
PTPN4-202ENST00000420482 PLEKHH1Q9ULM0 1364 aa31.2■■■□□ 2.59
PTPN4-202ENST00000420482 RGS12O14924 1447 aa31.2■■■□□ 2.59
PTPN4-202ENST00000420482 NUTM2FA1L443 756 aa31.17■■■□□ 2.58
PTPN4-202ENST00000420482 DCAF11Q8TEB1 546 aa31.17■■■□□ 2.58
PTPN4-202ENST00000420482 MARF1Q9Y4F3 1742 aaKnown RBP31.17■■■□□ 2.58
PTPN4-202ENST00000420482 FMN2Q9NZ56 1722 aa31.15■■■□□ 2.58
PTPN4-202ENST00000420482 FOXO3O43524 673 aa31.15■■■□□ 2.58
PTPN4-202ENST00000420482 RBM6P78332 1123 aaKnown RBP31.15■■■□□ 2.58
PTPN4-202ENST00000420482 QTRT2Q9H974 415 aaKnown RBP31.15■■■□□ 2.58
PTPN4-202ENST00000420482 POGKQ9P215 609 aa31.15■■■□□ 2.58
PTPN4-202ENST00000420482 KDM2AQ9Y2K7 1162 aa31.15■■■□□ 2.58
PTPN4-202ENST00000420482 ADAMTS2O95450 1211 aa31.13■■■□□ 2.57
PTPN4-202ENST00000420482 NGLY1Q96IV0 654 aa31.13■■■□□ 2.57
PTPN4-202ENST00000420482 PRAM1Q96QH2 718 aa31.13■■■□□ 2.57
PTPN4-202ENST00000420482 PXDNQ92626 1479 aa31.12■■■□□ 2.57
PTPN4-202ENST00000420482 DLC1Q96QB1 1528 aa31.12■■■□□ 2.57
PTPN4-202ENST00000420482 KIF1AQ12756 1690 aa31.12■■■□□ 2.57
PTPN4-202ENST00000420482 SAFB2Q14151 953 aaKnown RBP eCLIP31.08■■■□□ 2.57
PTPN4-202ENST00000420482 ADGRB1O14514 1584 aa31.06■■■□□ 2.56
PTPN4-202ENST00000420482 XPCQ01831 940 aaPredicted RBP31.06■■■□□ 2.56
PTPN4-202ENST00000420482 PHF8Q9UPP1 1060 aa31.04■■■□□ 2.56
PTPN4-202ENST00000420482 TRAK1Q9UPV9 953 aa31.04■■■□□ 2.56
PTPN4-202ENST00000420482 PSME1Q06323 249 aa31.03■■■□□ 2.56
PTPN4-202ENST00000420482 ATRNO75882 1429 aa31.02■■■□□ 2.56
PTPN4-202ENST00000420482 FNBP4Q8N3X1 1017 aaPredicted RBP31.02■■■□□ 2.56
PTPN4-202ENST00000420482 USP21Q9UK80 565 aa31.02■■■□□ 2.56
PTPN4-202ENST00000420482 EIF3AQ14152 1382 aaKnown RBP31.02■■■□□ 2.56
PTPN4-202ENST00000420482 KRT28Q7Z3Y7 464 aa31.01■■■□□ 2.55
PTPN4-202ENST00000420482 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.01■■■□□ 2.55
PTPN4-202ENST00000420482 TRPC5Q9UL62 973 aaPredicted RBP31■■■□□ 2.55
PTPN4-202ENST00000420482 ADGRB2O60241 1585 aa31■■■□□ 2.55
PTPN4-202ENST00000420482 ANKARQ7Z5J8 1434 aa30.99■■■□□ 2.55
PTPN4-202ENST00000420482 RGPD8O14715 1765 aaPredicted RBP30.99■■■□□ 2.55
PTPN4-202ENST00000420482 SPATA31A3Q5VYP0 1347 aa30.98■■■□□ 2.55
PTPN4-202ENST00000420482 ATAD2Q6PL18 1390 aa30.95■■■□□ 2.55
PTPN4-202ENST00000420482 BCL9LQ86UU0 1499 aa30.94■■■□□ 2.54
PTPN4-202ENST00000420482 MINK1Q8N4C8 1332 aaPredicted RBP30.93■■■□□ 2.54
PTPN4-202ENST00000420482 HAP1P54257 671 aaPredicted RBP30.92■■■□□ 2.54
PTPN4-202ENST00000420482 HIRIP3Q9BW71 556 aaPredicted RBP30.92■■■□□ 2.54
PTPN4-202ENST00000420482 TNS3Q68CZ2 1445 aa30.91■■■□□ 2.54
PTPN4-202ENST00000420482 USP32Q8NFA0 1604 aa30.9■■■□□ 2.54
PTPN4-202ENST00000420482 SBNO1A3KN83 1393 aa30.9■■■□□ 2.54
PTPN4-202ENST00000420482 ARHGEF10O15013 1369 aa30.89■■■□□ 2.54
PTPN4-202ENST00000420482 WASLO00401 505 aaPredicted RBP30.88■■■□□ 2.53
PTPN4-202ENST00000420482 PMFBP1Q8TBY8 1022 aa30.88■■■□□ 2.53
PTPN4-202ENST00000420482 LMOD2Q6P5Q4 547 aa30.87■■■□□ 2.53
PTPN4-202ENST00000420482 TULP4Q9NRJ4 1543 aa30.87■■■□□ 2.53
PTPN4-202ENST00000420482 GPRASP1Q5JY77 1395 aa30.86■■■□□ 2.53
PTPN4-202ENST00000420482 ABCA3Q99758 1704 aa30.86■■■□□ 2.53
PTPN4-202ENST00000420482 KIAA1210Q9ULL0 1709 aa30.86■■■□□ 2.53
PTPN4-202ENST00000420482 ARHGEF28Q8N1W1 1705 aaKnown RBP30.84■■■□□ 2.53
PTPN4-202ENST00000420482 SLIT2O94813 1529 aa30.84■■■□□ 2.53
PTPN4-202ENST00000420482 EP400Q96L91 3159 aa30.83■■■□□ 2.53
PTPN4-202ENST00000420482 GLI3P10071 1580 aa30.83■■■□□ 2.53
PTPN4-202ENST00000420482 PLCH1Q4KWH8 1693 aa30.81■■■□□ 2.52
PTPN4-202ENST00000420482 NWD2Q9ULI1 1742 aa30.8■■■□□ 2.52
PTPN4-202ENST00000420482 NGDNQ8NEJ9 315 aaKnown RBP30.79■■■□□ 2.52
PTPN4-202ENST00000420482 GJD4Q96KN9 370 aaPredicted RBP30.78■■■□□ 2.52
PTPN4-202ENST00000420482 BRWD3Q6RI45 1802 aa30.77■■■□□ 2.52
PTPN4-202ENST00000420482 PRR36Q9H6K5 1346 aa30.77■■■□□ 2.52
PTPN4-202ENST00000420482 ITSN1Q15811 1721 aa30.77■■■□□ 2.52
PTPN4-202ENST00000420482 UNC5CLQ8IV45 518 aa30.77■■■□□ 2.52
PTPN4-202ENST00000420482 RALGAPBQ86X10 1494 aa30.76■■■□□ 2.52
PTPN4-202ENST00000420482 PLEKHG5O94827 1062 aa30.75■■■□□ 2.51
PTPN4-202ENST00000420482 CABLES1Q8TDN4 633 aa30.75■■■□□ 2.51
PTPN4-202ENST00000420482 NUDT16Q96DE0 195 aaKnown RBP30.73■■■□□ 2.51
PTPN4-202ENST00000420482 TRPM3Q9HCF6 1732 aaPredicted RBP30.73■■■□□ 2.51
PTPN4-202ENST00000420482 CDK19Q9BWU1 502 aa30.71■■■□□ 2.51
PTPN4-202ENST00000420482 ATP7BP35670 1465 aa30.7■■■□□ 2.51
PTPN4-202ENST00000420482 PAK3O75914 559 aaPredicted RBP30.7■■■□□ 2.51
PTPN4-202ENST00000420482 NBPF1Q3BBV0 1214 aa30.69■■■□□ 2.5
PTPN4-202ENST00000420482 CCDC125Q86Z20 511 aa30.69■■■□□ 2.5
PTPN4-202ENST00000420482 ALS2Q96Q42 1657 aa30.68■■■□□ 2.5
PTPN4-202ENST00000420482 L3MBTL2Q969R5 705 aa30.67■■■□□ 2.5
PTPN4-202ENST00000420482 CCDC61Q9Y6R9 512 aa30.66■■■□□ 2.5
PTPN4-202ENST00000420482 CENPJQ9HC77 1338 aaPredicted RBP30.66■■■□□ 2.5
PTPN4-202ENST00000420482 NRAPQ86VF7 1730 aa30.65■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms