RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 LAMC1P11047 1609 aa32.94■■■□□ 2.86
MSH6-202ENST00000411819 MYOM2P54296 1465 aa32.93■■■□□ 2.86
MSH6-202ENST00000411819 PNPLA6Q8IY17 1366 aa32.92■■■□□ 2.86
MSH6-202ENST00000411819 ZNF772Q68DY9 489 aaPredicted RBP32.91■■■□□ 2.86
MSH6-202ENST00000411819 WAPLQ7Z5K2 1190 aa32.91■■■□□ 2.86
MSH6-202ENST00000411819 ABCC11Q96J66 1382 aa32.9■■■□□ 2.86
MSH6-202ENST00000411819 YTHDC2Q9H6S0 1430 aaKnown RBP32.9■■■□□ 2.86
MSH6-202ENST00000411819 NRXN1Q9ULB1 1477 aa32.88■■■□□ 2.85
MSH6-202ENST00000411819 PLEKHH1Q9ULM0 1364 aa32.87■■■□□ 2.85
MSH6-202ENST00000411819 ESCO1Q5FWF5 840 aa32.84■■■□□ 2.85
MSH6-202ENST00000411819 SOS2Q07890 1332 aaPredicted RBP32.83■■■□□ 2.85
MSH6-202ENST00000411819 C14orf93Q9H972 538 aaKnown RBP32.83■■■□□ 2.85
MSH6-202ENST00000411819 NUTM2FA1L443 756 aa32.82■■■□□ 2.84
MSH6-202ENST00000411819 CFAP70Q5T0N1 1121 aa32.82■■■□□ 2.84
MSH6-202ENST00000411819 FMN2Q9NZ56 1722 aa32.81■■■□□ 2.84
MSH6-202ENST00000411819 AFF2P51816 1311 aa32.8■■■□□ 2.84
MSH6-202ENST00000411819 DHX57Q6P158 1386 aaKnown RBP32.8■■■□□ 2.84
MSH6-202ENST00000411819 C8orf37Q96NL8 207 aa32.79■■■□□ 2.84
MSH6-202ENST00000411819 NPHP3Q7Z494 1330 aa32.78■■■□□ 2.84
MSH6-202ENST00000411819 ADAMTS2O95450 1211 aa32.74■■■□□ 2.83
MSH6-202ENST00000411819 HRCP23327 699 aa32.74■■■□□ 2.83
MSH6-202ENST00000411819 PXDNQ92626 1479 aa32.74■■■□□ 2.83
MSH6-202ENST00000411819 COL22A1Q8NFW1 1626 aaPredicted RBP32.73■■■□□ 2.83
MSH6-202ENST00000411819 KIF1AQ12756 1690 aa32.72■■■□□ 2.83
MSH6-202ENST00000411819 FOXO3O43524 673 aa32.72■■■□□ 2.83
MSH6-202ENST00000411819 RXRBP28702 533 aa32.72■■■□□ 2.83
MSH6-202ENST00000411819 XPCQ01831 940 aaPredicted RBP32.72■■■□□ 2.83
MSH6-202ENST00000411819 SIRT1Q96EB6 747 aa32.71■■■□□ 2.83
MSH6-202ENST00000411819 KDM2AQ9Y2K7 1162 aa32.71■■■□□ 2.83
MSH6-202ENST00000411819 SAFB2Q14151 953 aaKnown RBP eCLIP32.7■■■□□ 2.83
MSH6-202ENST00000411819 DCAF11Q8TEB1 546 aa32.69■■■□□ 2.82
MSH6-202ENST00000411819 PRAM1Q96QH2 718 aa32.69■■■□□ 2.82
MSH6-202ENST00000411819 DLC1Q96QB1 1528 aa32.68■■■□□ 2.82
MSH6-202ENST00000411819 NGLY1Q96IV0 654 aa32.68■■■□□ 2.82
MSH6-202ENST00000411819 RGPD8O14715 1765 aaPredicted RBP32.68■■■□□ 2.82
MSH6-202ENST00000411819 ADGRB1O14514 1584 aa32.67■■■□□ 2.82
MSH6-202ENST00000411819 POGKQ9P215 609 aa32.65■■■□□ 2.82
MSH6-202ENST00000411819 CDK12Q9NYV4 1490 aaPredicted RBP32.63■■■□□ 2.81
MSH6-202ENST00000411819 QTRT2Q9H974 415 aaKnown RBP32.61■■■□□ 2.81
MSH6-202ENST00000411819 TRAK1Q9UPV9 953 aa32.6■■■□□ 2.81
MSH6-202ENST00000411819 ADGRB2O60241 1585 aa32.59■■■□□ 2.81
MSH6-202ENST00000411819 MARF1Q9Y4F3 1742 aaKnown RBP32.59■■■□□ 2.81
MSH6-202ENST00000411819 RBM6P78332 1123 aaKnown RBP32.56■■■□□ 2.8
MSH6-202ENST00000411819 STAC3Q96MF2 364 aa32.56■■■□□ 2.8
MSH6-202ENST00000411819 USP21Q9UK80 565 aa32.56■■■□□ 2.8
MSH6-202ENST00000411819 PHF8Q9UPP1 1060 aa32.56■■■□□ 2.8
MSH6-202ENST00000411819 RGS12O14924 1447 aa32.55■■■□□ 2.8
MSH6-202ENST00000411819 KRT28Q7Z3Y7 464 aa32.54■■■□□ 2.8
MSH6-202ENST00000411819 USP32Q8NFA0 1604 aa32.54■■■□□ 2.8
MSH6-202ENST00000411819 SPATA31A3Q5VYP0 1347 aa32.53■■■□□ 2.8
MSH6-202ENST00000411819 ANKARQ7Z5J8 1434 aa32.52■■■□□ 2.8
MSH6-202ENST00000411819 HIRIP3Q9BW71 556 aaPredicted RBP32.52■■■□□ 2.8
MSH6-202ENST00000411819 MINK1Q8N4C8 1332 aaPredicted RBP32.51■■■□□ 2.8
MSH6-202ENST00000411819 ARHGEF28Q8N1W1 1705 aaKnown RBP32.5■■■□□ 2.79
MSH6-202ENST00000411819 TNS3Q68CZ2 1445 aa32.5■■■□□ 2.79
MSH6-202ENST00000411819 FNBP4Q8N3X1 1017 aaPredicted RBP32.49■■■□□ 2.79
MSH6-202ENST00000411819 TRPC5Q9UL62 973 aaPredicted RBP32.49■■■□□ 2.79
MSH6-202ENST00000411819 UPF1Q92900 1129 aaKnown RBP eCLIP32.48■■■□□ 2.79
MSH6-202ENST00000411819 PSME1Q06323 249 aa32.47■■■□□ 2.79
MSH6-202ENST00000411819 PMFBP1Q8TBY8 1022 aa32.46■■■□□ 2.79
MSH6-202ENST00000411819 EIF3AQ14152 1382 aaKnown RBP32.45■■■□□ 2.79
MSH6-202ENST00000411819 TULP4Q9NRJ4 1543 aa32.45■■■□□ 2.78
MSH6-202ENST00000411819 ATRNO75882 1429 aa32.44■■■□□ 2.78
MSH6-202ENST00000411819 PLEKHG5O94827 1062 aa32.43■■■□□ 2.78
MSH6-202ENST00000411819 HAP1P54257 671 aaPredicted RBP32.43■■■□□ 2.78
MSH6-202ENST00000411819 LMOD2Q6P5Q4 547 aa32.43■■■□□ 2.78
MSH6-202ENST00000411819 KIAA1210Q9ULL0 1709 aa32.41■■■□□ 2.78
MSH6-202ENST00000411819 SBNO1A3KN83 1393 aa32.41■■■□□ 2.78
MSH6-202ENST00000411819 BCL9LQ86UU0 1499 aa32.41■■■□□ 2.78
MSH6-202ENST00000411819 ABCA3Q99758 1704 aa32.4■■■□□ 2.78
MSH6-202ENST00000411819 TNKS1BP1Q9C0C2 1729 aaKnown RBP32.4■■■□□ 2.78
MSH6-202ENST00000411819 WASLO00401 505 aaPredicted RBP32.39■■■□□ 2.78
MSH6-202ENST00000411819 ARHGEF10O15013 1369 aa32.38■■■□□ 2.77
MSH6-202ENST00000411819 PRR36Q9H6K5 1346 aa32.38■■■□□ 2.77
MSH6-202ENST00000411819 CABLES1Q8TDN4 633 aa32.36■■■□□ 2.77
MSH6-202ENST00000411819 ITSN1Q15811 1721 aa32.36■■■□□ 2.77
MSH6-202ENST00000411819 TRPM3Q9HCF6 1732 aaPredicted RBP32.36■■■□□ 2.77
MSH6-202ENST00000411819 GPRASP1Q5JY77 1395 aa32.34■■■□□ 2.77
MSH6-202ENST00000411819 SLIT2O94813 1529 aa32.33■■■□□ 2.77
MSH6-202ENST00000411819 PLCH1Q4KWH8 1693 aa32.32■■■□□ 2.76
MSH6-202ENST00000411819 ATP7BP35670 1465 aa32.3■■■□□ 2.76
MSH6-202ENST00000411819 UNC5CLQ8IV45 518 aa32.3■■■□□ 2.76
MSH6-202ENST00000411819 ALS2Q96Q42 1657 aa32.3■■■□□ 2.76
MSH6-202ENST00000411819 ATAD2Q6PL18 1390 aa32.3■■■□□ 2.76
MSH6-202ENST00000411819 NGDNQ8NEJ9 315 aaKnown RBP32.29■■■□□ 2.76
MSH6-202ENST00000411819 GJD4Q96KN9 370 aaPredicted RBP32.28■■■□□ 2.76
MSH6-202ENST00000411819 NWD2Q9ULI1 1742 aa32.26■■■□□ 2.76
MSH6-202ENST00000411819 NBPF1Q3BBV0 1214 aa32.26■■■□□ 2.75
MSH6-202ENST00000411819 GLI3P10071 1580 aa32.25■■■□□ 2.75
MSH6-202ENST00000411819 RALGAPBQ86X10 1494 aa32.24■■■□□ 2.75
MSH6-202ENST00000411819 NUDT16Q96DE0 195 aaKnown RBP32.24■■■□□ 2.75
MSH6-202ENST00000411819 PAK3O75914 559 aaPredicted RBP32.23■■■□□ 2.75
MSH6-202ENST00000411819 TOPAZ1Q8N9V7 1692 aa32.23■■■□□ 2.75
MSH6-202ENST00000411819 CDK19Q9BWU1 502 aa32.22■■■□□ 2.75
MSH6-202ENST00000411819 CRYBG1Q9Y4K1 1723 aa32.18■■■□□ 2.74
MSH6-202ENST00000411819 L3MBTL2Q969R5 705 aa32.18■■■□□ 2.74
MSH6-202ENST00000411819 CCDC9Q9Y3X0 531 aaKnown RBP32.18■■■□□ 2.74
MSH6-202ENST00000411819 SIN3AQ96ST3 1273 aa32.17■■■□□ 2.74
MSH6-202ENST00000411819 QRICH2Q9H0J4 1663 aa32.17■■■□□ 2.74
MSH6-202ENST00000411819 VPS72Q15906 364 aa32.15■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms