RNA–Protein interactions for RNA: ENST00000403461.5

CEACAM1-208, Transcript of carcinoembryonic antigen related cell adhesion molecule 1, human

TSL 1 (best) BASIC

Gene CEACAM1, Length 1,263 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CEACAM1-208	ENST00000403461	RAPGEF3	O95398	923 aa		11.29	□□□□□ -0.6
CEACAM1-208	ENST00000403461	TTC13	Q8NBP0	860 aa		11.29	□□□□□ -0.6
CEACAM1-208	ENST00000403461	NEO1	Q92859	1461 aa		11.29	□□□□□ -0.6
CEACAM1-208	ENST00000403461	GOLGA8CP	A6NN73	597 aa		11.28	□□□□□ -0.6
CEACAM1-208	ENST00000403461	SLC4A5	Q9BY07	1137 aa		11.28	□□□□□ -0.6
CEACAM1-208	ENST00000403461	PTPRM	P28827	1452 aa		11.27	□□□□□ -0.6
CEACAM1-208	ENST00000403461	CCDC102A	Q96A19	550 aa		11.27	□□□□□ -0.61
CEACAM1-208	ENST00000403461	ZBED2	Q9BTP6	218 aa		11.27	□□□□□ -0.61
CEACAM1-208	ENST00000403461	KIF21B	O75037	1637 aa		11.27	□□□□□ -0.61
CEACAM1-208	ENST00000403461	ONECUT3	O60422	494 aa	Predicted RBP	11.26	□□□□□ -0.61
CEACAM1-208	ENST00000403461	PLEKHD1	A6NEE1	506 aa		11.25	□□□□□ -0.61
CEACAM1-208	ENST00000403461	TRIM6-TRIM34	B2RNG4	842 aa		11.25	□□□□□ -0.61
CEACAM1-208	ENST00000403461	MRPL50	Q8N5N7	158 aa	Known RBP	11.25	□□□□□ -0.61
CEACAM1-208	ENST00000403461	TSKS	Q9UJT2	592 aa		11.25	□□□□□ -0.61
CEACAM1-208	ENST00000403461	ABCA9	Q8IUA7	1624 aa		11.24	□□□□□ -0.61
CEACAM1-208	ENST00000403461	PROX2	Q3B8N5	592 aa		11.24	□□□□□ -0.61
CEACAM1-208	ENST00000403461	PACS2	Q86VP3	889 aa		11.24	□□□□□ -0.61
CEACAM1-208	ENST00000403461	FAM198A	Q9UFP1	575 aa		11.24	□□□□□ -0.61
CEACAM1-208	ENST00000403461	POGZ	Q7Z3K3	1410 aa		11.24	□□□□□ -0.61
CEACAM1-208	ENST00000403461	TRIM66	O15016	1216 aa		11.23	□□□□□ -0.61
CEACAM1-208	ENST00000403461	OAT	P04181	439 aa		11.23	□□□□□ -0.61
CEACAM1-208	ENST00000403461	RANGAP1	P46060	587 aa	Predicted RBP	11.23	□□□□□ -0.61
CEACAM1-208	ENST00000403461	ADGRG1	Q9Y653	693 aa		11.23	□□□□□ -0.61
CEACAM1-208	ENST00000403461	DENND4B	O75064	1496 aa	Predicted RBP	11.23	□□□□□ -0.61
CEACAM1-208	ENST00000403461	WNT2B	Q93097	391 aa		11.22	□□□□□ -0.61
CEACAM1-208	ENST00000403461	NBPF3	Q9H094	633 aa		11.22	□□□□□ -0.61
CEACAM1-208	ENST00000403461	RAPGEF6	Q8TEU7	1601 aa		11.21	□□□□□ -0.61
CEACAM1-208	ENST00000403461	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.21	□□□□□ -0.61
CEACAM1-208	ENST00000403461	EEA1	Q15075	1411 aa		11.2	□□□□□ -0.62
CEACAM1-208	ENST00000403461	AKNA	Q7Z591	1439 aa		11.2	□□□□□ -0.62
CEACAM1-208	ENST00000403461	FAM161A	Q3B820	660 aa		11.2	□□□□□ -0.62
CEACAM1-208	ENST00000403461	THSD4	Q6ZMP0	1018 aa		11.2	□□□□□ -0.62
CEACAM1-208	ENST00000403461	PCF11	O94913	1555 aa	Known RBP	11.2	□□□□□ -0.62
CEACAM1-208	ENST00000403461	SAMD9	Q5K651	1589 aa		11.2	□□□□□ -0.62
CEACAM1-208	ENST00000403461	NUP153	P49790	1475 aa	Known RBP	11.19	□□□□□ -0.62
CEACAM1-208	ENST00000403461	NBPF26	B4DH59	902 aa		11.19	□□□□□ -0.62
CEACAM1-208	ENST00000403461	METTL3	Q86U44	580 aa	Known RBP	11.19	□□□□□ -0.62
CEACAM1-208	ENST00000403461	RBM46	Q8TBY0	533 aa	Known RBP	11.19	□□□□□ -0.62
CEACAM1-208	ENST00000403461	KIAA1468	Q9P260	1216 aa		11.19	□□□□□ -0.62
CEACAM1-208	ENST00000403461	RABGEF1	Q9UJ41	708 aa		11.19	□□□□□ -0.62
CEACAM1-208	ENST00000403461	ADAMTSL3	P82987	1691 aa		11.19	□□□□□ -0.62
CEACAM1-208	ENST00000403461	FANCA	O15360	1455 aa		11.19	□□□□□ -0.62
CEACAM1-208	ENST00000403461	FHOD3	Q2V2M9	1422 aa		11.18	□□□□□ -0.62
CEACAM1-208	ENST00000403461	AMHR2	Q16671	573 aa		11.18	□□□□□ -0.62
CEACAM1-208	ENST00000403461	PXYLP1	Q8TE99	480 aa		11.18	□□□□□ -0.62
CEACAM1-208	ENST00000403461	TATDN2	Q93075	761 aa		11.18	□□□□□ -0.62
CEACAM1-208	ENST00000403461	NUDT18	Q6ZVK8	323 aa		11.17	□□□□□ -0.62
CEACAM1-208	ENST00000403461	EYA1	Q99502	592 aa		11.17	□□□□□ -0.62
CEACAM1-208	ENST00000403461	PNMA3	Q9UL41	463 aa		11.17	□□□□□ -0.62
CEACAM1-208	ENST00000403461	ARHGEF40	Q8TER5	1519 aa		11.17	□□□□□ -0.62
CEACAM1-208	ENST00000403461	LMTK3	Q96Q04	1460 aa		11.17	□□□□□ -0.62
CEACAM1-208	ENST00000403461	PDE4D	Q08499	809 aa		11.16	□□□□□ -0.62
CEACAM1-208	ENST00000403461	PHOX2B	Q99453	314 aa		11.16	□□□□□ -0.62
CEACAM1-208	ENST00000403461	MAGI2	Q86UL8	1455 aa		11.15	□□□□□ -0.62
CEACAM1-208	ENST00000403461	C3orf80	F5H4A9	247 aa		11.15	□□□□□ -0.62
CEACAM1-208	ENST00000403461	MADD	Q8WXG6	1647 aa		11.15	□□□□□ -0.62
CEACAM1-208	ENST00000403461	FRMPD1	Q5SYB0	1578 aa		11.15	□□□□□ -0.62
CEACAM1-208	ENST00000403461	CFAP74	Q9C0B2	1584 aa		11.15	□□□□□ -0.62
CEACAM1-208	ENST00000403461	BCORL1	Q5H9F3	1711 aa		11.15	□□□□□ -0.63
CEACAM1-208	ENST00000403461	HSPA2	P54652	639 aa		11.14	□□□□□ -0.63
CEACAM1-208	ENST00000403461	BRPF1	P55201	1214 aa	Predicted RBP	11.14	□□□□□ -0.63
CEACAM1-208	ENST00000403461	EFCAB5	A4FU69	1503 aa		11.14	□□□□□ -0.63
CEACAM1-208	ENST00000403461	ZFYVE16	Q7Z3T8	1539 aa		11.14	□□□□□ -0.63
CEACAM1-208	ENST00000403461	MLEC	Q14165	292 aa		11.13	□□□□□ -0.63
CEACAM1-208	ENST00000403461	NEUROD2	Q15784	382 aa		11.13	□□□□□ -0.63
CEACAM1-208	ENST00000403461	CDK11A	Q9UQ88	783 aa	Predicted RBP	11.13	□□□□□ -0.63
CEACAM1-208	ENST00000403461	ZMYM4	Q5VZL5	1548 aa		11.11	□□□□□ -0.63
CEACAM1-208	ENST00000403461	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.11	□□□□□ -0.63
CEACAM1-208	ENST00000403461	SMAP	O00193	183 aa		11.11	□□□□□ -0.63
CEACAM1-208	ENST00000403461	ATP1B4	Q9UN42	357 aa	Predicted RBP	11.11	□□□□□ -0.63
CEACAM1-208	ENST00000403461	SCAPER	Q9BY12	1400 aa		11.1	□□□□□ -0.63
CEACAM1-208	ENST00000403461	YEATS2	Q9ULM3	1422 aa		11.1	□□□□□ -0.63
CEACAM1-208	ENST00000403461	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	11.1	□□□□□ -0.63
CEACAM1-208	ENST00000403461	RCCD1	A6NED2	376 aa		11.1	□□□□□ -0.63
CEACAM1-208	ENST00000403461	CLCN1	P35523	988 aa		11.1	□□□□□ -0.63
CEACAM1-208	ENST00000403461	TTLL12	Q14166	644 aa	Predicted RBP	11.1	□□□□□ -0.63
CEACAM1-208	ENST00000403461	EFCAB2	Q5VUJ9	269 aa		11.1	□□□□□ -0.63
CEACAM1-208	ENST00000403461	ANKK1	Q8NFD2	765 aa		11.1	□□□□□ -0.63
CEACAM1-208	ENST00000403461	PLCH2	O75038	1416 aa		11.09	□□□□□ -0.63
CEACAM1-208	ENST00000403461	RIMS1	Q86UR5	1692 aa	Known RBP	11.09	□□□□□ -0.63
CEACAM1-208	ENST00000403461	DNAJB2	P25686	324 aa		11.09	□□□□□ -0.63
CEACAM1-208	ENST00000403461	MDM2	Q00987	491 aa	Predicted RBP	11.09	□□□□□ -0.63
CEACAM1-208	ENST00000403461	LAPTM4B	Q86VI4	370 aa		11.09	□□□□□ -0.63
CEACAM1-208	ENST00000403461	PARP9	Q8IXQ6	854 aa		11.09	□□□□□ -0.63
CEACAM1-208	ENST00000403461	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.09	□□□□□ -0.63
CEACAM1-208	ENST00000403461	C9orf84	Q5VXU9	1444 aa		11.09	□□□□□ -0.63
CEACAM1-208	ENST00000403461	FAM98C	Q17RN3	349 aa	Known RBP	11.08	□□□□□ -0.64
CEACAM1-208	ENST00000403461	TMUB1	Q9BVT8	246 aa		11.08	□□□□□ -0.64
CEACAM1-208	ENST00000403461	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.08	□□□□□ -0.64
CEACAM1-208	ENST00000403461	GPCPD1	Q9NPB8	672 aa		11.08	□□□□□ -0.64
CEACAM1-208	ENST00000403461	FMN1	Q68DA7	1419 aa		11.08	□□□□□ -0.64
CEACAM1-208	ENST00000403461	ATP10A	O60312	1499 aa		11.07	□□□□□ -0.64
CEACAM1-208	ENST00000403461	NLRP7	Q8WX94	980 aa		11.07	□□□□□ -0.64
CEACAM1-208	ENST00000403461	UBTF	P17480	764 aa	Known RBP	11.06	□□□□□ -0.64
CEACAM1-208	ENST00000403461	REPIN1	Q9BWE0	567 aa	Known RBP	11.06	□□□□□ -0.64
CEACAM1-208	ENST00000403461	KDM4C	Q9H3R0	1056 aa		11.06	□□□□□ -0.64
CEACAM1-208	ENST00000403461	ESF1	Q9H501	851 aa	Known RBP	11.06	□□□□□ -0.64
CEACAM1-208	ENST00000403461	TMEM134	Q9H6X4	195 aa		11.06	□□□□□ -0.64
CEACAM1-208	ENST00000403461	TTC37	Q6PGP7	1564 aa		11.06	□□□□□ -0.64
CEACAM1-208	ENST00000403461	RICTOR	Q6R327	1708 aa		11.06	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms