RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 API5Q9BZZ5 524 aaKnown RBP9.79□□□□□ -0.84
USP47-203ENST00000399455 CCDC141Q6ZP82 1450 aa9.79□□□□□ -0.84
USP47-203ENST00000399455 RIPK4P57078 832 aa9.79□□□□□ -0.84
USP47-203ENST00000399455 SLC3A2P08195 630 aaKnown RBP9.79□□□□□ -0.84
USP47-203ENST00000399455 TRDNQ13061 729 aa9.79□□□□□ -0.84
USP47-203ENST00000399455 WWC2Q6AWC2 1192 aa9.79□□□□□ -0.84
USP47-203ENST00000399455 CDK19Q9BWU1 502 aa9.79□□□□□ -0.84
USP47-203ENST00000399455 CCDC27Q2M243 656 aa9.78□□□□□ -0.84
USP47-203ENST00000399455 UBAP1LF5GYI3 381 aa9.78□□□□□ -0.84
USP47-203ENST00000399455 FAM135AQ9P2D6 1515 aa9.78□□□□□ -0.84
USP47-203ENST00000399455 TPM2P07951 284 aa9.78□□□□□ -0.84
USP47-203ENST00000399455 TRIM29Q14134 588 aa9.78□□□□□ -0.84
USP47-203ENST00000399455 DIAPH3Q9NSV4 1193 aa9.78□□□□□ -0.84
USP47-203ENST00000399455 FANCAO15360 1455 aa9.78□□□□□ -0.84
USP47-203ENST00000399455 RRP7AQ9Y3A4 280 aaKnown RBP9.77□□□□□ -0.84
USP47-203ENST00000399455 FKBP5Q13451 457 aaPredicted RBP9.77□□□□□ -0.84
USP47-203ENST00000399455 TMEM132EQ6IEE7 984 aa9.77□□□□□ -0.84
USP47-203ENST00000399455 ZNF652Q9Y2D9 606 aa9.77□□□□□ -0.84
USP47-203ENST00000399455 MFAP1P55081 439 aaKnown RBP9.77□□□□□ -0.85
USP47-203ENST00000399455 NECTIN2Q92692 538 aa9.77□□□□□ -0.85
USP47-203ENST00000399455 SYAP1Q96A49 352 aaPredicted RBP9.77□□□□□ -0.85
USP47-203ENST00000399455 RUNDC1Q96C34 613 aa9.77□□□□□ -0.85
USP47-203ENST00000399455 ANKRD30BQ9BXX2 1392 aa9.77□□□□□ -0.85
USP47-203ENST00000399455 ZKSCAN2Q63HK3 967 aa9.76□□□□□ -0.85
USP47-203ENST00000399455 AIMP1Q12904 312 aaKnown RBP9.76□□□□□ -0.85
USP47-203ENST00000399455 CCDC30Q5VVM6 783 aa9.76□□□□□ -0.85
USP47-203ENST00000399455 CCDC47Q96A33 483 aaKnown RBP9.76□□□□□ -0.85
USP47-203ENST00000399455 SLC26A8Q96RN1 970 aa9.76□□□□□ -0.85
USP47-203ENST00000399455 TBC1D2BQ9UPU7 963 aa9.76□□□□□ -0.85
USP47-203ENST00000399455 ZPR1O75312 459 aa9.75□□□□□ -0.85
USP47-203ENST00000399455 H3BQV1 296 aa9.75□□□□□ -0.85
USP47-203ENST00000399455 IFFO2Q5TF58 517 aa9.75□□□□□ -0.85
USP47-203ENST00000399455 NOC3LQ8WTT2 800 aaKnown RBP9.75□□□□□ -0.85
USP47-203ENST00000399455 RILPL2Q969X0 211 aa9.75□□□□□ -0.85
USP47-203ENST00000399455 ADAMTS2O95450 1211 aa9.75□□□□□ -0.85
USP47-203ENST00000399455 ERC2O15083 957 aa9.75□□□□□ -0.85
USP47-203ENST00000399455 IKQ13123 557 aaPredicted RBP9.74□□□□□ -0.85
USP47-203ENST00000399455 ATAD2Q6PL18 1390 aa9.74□□□□□ -0.85
USP47-203ENST00000399455 CNTLNQ9NXG0 1405 aa9.74□□□□□ -0.85
USP47-203ENST00000399455 FAM184AQ8NB25 1140 aa9.74□□□□□ -0.85
USP47-203ENST00000399455 ST18O60284 1047 aa9.74□□□□□ -0.85
USP47-203ENST00000399455 SAMD1Q6SPF0 538 aaPredicted RBP9.74□□□□□ -0.85
USP47-203ENST00000399455 NFXL1Q6ZNB6 911 aa9.74□□□□□ -0.85
USP47-203ENST00000399455 ARHGEF11O15085 1522 aa9.74□□□□□ -0.85
USP47-203ENST00000399455 STARD3NLO95772 234 aa9.74□□□□□ -0.85
USP47-203ENST00000399455 ELL2O00472 640 aaPredicted RBP9.73□□□□□ -0.85
USP47-203ENST00000399455 TCERG1O14776 1098 aaKnown RBP9.73□□□□□ -0.85
USP47-203ENST00000399455 MTHFSP49914 203 aa9.73□□□□□ -0.85
USP47-203ENST00000399455 FAM177BA6PVY3 158 aa9.73□□□□□ -0.85
USP47-203ENST00000399455 HMOX1P09601 288 aa9.73□□□□□ -0.85
USP47-203ENST00000399455 SF3A1Q15459 793 aaKnown RBP9.73□□□□□ -0.85
USP47-203ENST00000399455 C16orf71Q8IYS4 520 aaPredicted RBP9.73□□□□□ -0.85
USP47-203ENST00000399455 GBP4Q96PP9 640 aa9.73□□□□□ -0.85
USP47-203ENST00000399455 RBM5P52756 815 aaKnown RBP eCLIP9.73□□□□□ -0.85
USP47-203ENST00000399455 RNF20Q5VTR2 975 aa9.73□□□□□ -0.85
USP47-203ENST00000399455 CADPS2Q86UW7 1296 aa9.73□□□□□ -0.85
USP47-203ENST00000399455 GGNBP2Q9H3C7 697 aa9.73□□□□□ -0.85
USP47-203ENST00000399455 CNNM1Q9NRU3 951 aa9.73□□□□□ -0.85
USP47-203ENST00000399455 FYB1O15117 783 aa9.72□□□□□ -0.85
USP47-203ENST00000399455 PLIN1O60240 522 aa9.72□□□□□ -0.85
USP47-203ENST00000399455 TNRQ92752 1358 aa9.72□□□□□ -0.85
USP47-203ENST00000399455 R3HCC1Q9Y3T6 440 aaKnown RBP9.72□□□□□ -0.85
USP47-203ENST00000399455 URB2Q14146 1524 aaKnown RBP9.72□□□□□ -0.85
USP47-203ENST00000399455 TPD52L1Q16890 204 aaPredicted RBP9.72□□□□□ -0.85
USP47-203ENST00000399455 TMOD3Q9NYL9 352 aa9.72□□□□□ -0.85
USP47-203ENST00000399455 BRMS1Q9HCU9 246 aa9.72□□□□□ -0.85
USP47-203ENST00000399455 TMOD2Q9NZR1 351 aa9.71□□□□□ -0.85
USP47-203ENST00000399455 NINLQ9Y2I6 1382 aa9.71□□□□□ -0.85
USP47-203ENST00000399455 PAXIP1Q6ZW49 1069 aaPredicted RBP9.71□□□□□ -0.85
USP47-203ENST00000399455 CLUAP1Q96AJ1 413 aa9.71□□□□□ -0.85
USP47-203ENST00000399455 NEUROD6Q96NK8 337 aa9.71□□□□□ -0.85
USP47-203ENST00000399455 ZNF530Q6P9A1 599 aaPredicted RBP9.71□□□□□ -0.86
USP47-203ENST00000399455 CDK13Q14004 1512 aaKnown RBP9.71□□□□□ -0.86
USP47-203ENST00000399455 ZKSCAN1P17029 563 aaPredicted RBP9.71□□□□□ -0.86
USP47-203ENST00000399455 KIAA1107Q9UPP5 1409 aa9.71□□□□□ -0.86
USP47-203ENST00000399455 DDX19BQ9UMR2 479 aa9.71□□□□□ -0.86
USP47-203ENST00000399455 NBPF8Q3BBV2 869 aa9.7□□□□□ -0.86
USP47-203ENST00000399455 NBPF14Q5TI25 921 aa9.7□□□□□ -0.86
USP47-203ENST00000399455 CAMSAP2Q08AD1 1489 aa9.7□□□□□ -0.86
USP47-203ENST00000399455 UBTFL1P0CB47 393 aaPredicted RBP9.7□□□□□ -0.86
USP47-203ENST00000399455 ITSN2Q9NZM3 1697 aa9.7□□□□□ -0.86
USP47-203ENST00000399455 TTC39AQ5SRH9 613 aa9.7□□□□□ -0.86
USP47-203ENST00000399455 CFAP70Q5T0N1 1121 aa9.7□□□□□ -0.86
USP47-203ENST00000399455 CPLX1O14810 134 aa9.69□□□□□ -0.86
USP47-203ENST00000399455 ERC1Q8IUD2 1116 aa9.69□□□□□ -0.86
USP47-203ENST00000399455 XBP1P17861 261 aa9.69□□□□□ -0.86
USP47-203ENST00000399455 SART3Q15020 963 aaKnown RBP9.69□□□□□ -0.86
USP47-203ENST00000399455 WASHC4Q2M389 1173 aa9.69□□□□□ -0.86
USP47-203ENST00000399455 ASXL2Q76L83 1435 aa9.69□□□□□ -0.86
USP47-203ENST00000399455 LMTK3Q96Q04 1460 aa9.69□□□□□ -0.86
USP47-203ENST00000399455 XPCQ01831 940 aaPredicted RBP9.69□□□□□ -0.86
USP47-203ENST00000399455 ANKRD45Q5TZF3 282 aa9.69□□□□□ -0.86
USP47-203ENST00000399455 ERICH6BQ5W0A0 696 aa9.69□□□□□ -0.86
USP47-203ENST00000399455 AK7Q96M32 723 aa9.69□□□□□ -0.86
USP47-203ENST00000399455 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.69□□□□□ -0.86
USP47-203ENST00000399455 CCDC158Q5M9N0 1113 aa9.68□□□□□ -0.86
USP47-203ENST00000399455 CREBRFQ8IUR6 639 aa9.68□□□□□ -0.86
USP47-203ENST00000399455 HOOK1Q9UJC3 728 aaKnown RBP9.68□□□□□ -0.86
USP47-203ENST00000399455 TIAM1Q13009 1591 aa9.68□□□□□ -0.86
USP47-203ENST00000399455 TMEM132AQ24JP5 1023 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms