RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 STK26Q9P289 416 aa15.41■□□□□ 0.06
NEDD8-202ENST00000396828 CCDC144AA2RUR9 1427 aa15.41■□□□□ 0.06
NEDD8-202ENST00000396828 PLEKHH1Q9ULM0 1364 aa15.4■□□□□ 0.06
NEDD8-202ENST00000396828 NUTM2FA1L443 756 aa15.39■□□□□ 0.05
NEDD8-202ENST00000396828 QTRT2Q9H974 415 aaKnown RBP15.39■□□□□ 0.05
NEDD8-202ENST00000396828 TRIM26Q12899 539 aaPredicted RBP15.38■□□□□ 0.05
NEDD8-202ENST00000396828 SRCAPQ6ZRS2 3230 aa15.38■□□□□ 0.05
NEDD8-202ENST00000396828 XPCQ01831 940 aaPredicted RBP15.37■□□□□ 0.05
NEDD8-202ENST00000396828 ESCO1Q5FWF5 840 aa15.37■□□□□ 0.05
NEDD8-202ENST00000396828 NGLY1Q96IV0 654 aa15.37■□□□□ 0.05
NEDD8-202ENST00000396828 CDC42BPGQ6DT37 1551 aa15.36■□□□□ 0.05
NEDD8-202ENST00000396828 RGS12O14924 1447 aa15.36■□□□□ 0.05
NEDD8-202ENST00000396828 TECPR2O15040 1411 aa15.36■□□□□ 0.05
NEDD8-202ENST00000396828 PIK3C2GO75747 1445 aa15.36■□□□□ 0.05
NEDD8-202ENST00000396828 CDK12Q9NYV4 1490 aaPredicted RBP15.36■□□□□ 0.05
NEDD8-202ENST00000396828 EP400Q96L91 3159 aa15.36■□□□□ 0.05
NEDD8-202ENST00000396828 LRPPRCP42704 1394 aaKnown RBP15.36■□□□□ 0.05
NEDD8-202ENST00000396828 PXDNQ92626 1479 aa15.35■□□□□ 0.05
NEDD8-202ENST00000396828 FOXO3O43524 673 aa15.35■□□□□ 0.05
NEDD8-202ENST00000396828 ANKRD30BQ9BXX2 1392 aa15.35■□□□□ 0.05
NEDD8-202ENST00000396828 RBM6P78332 1123 aaKnown RBP15.34■□□□□ 0.05
NEDD8-202ENST00000396828 COL22A1Q8NFW1 1626 aaPredicted RBP15.34■□□□□ 0.05
NEDD8-202ENST00000396828 ABCC11Q96J66 1382 aa15.34■□□□□ 0.05
NEDD8-202ENST00000396828 KNDC1Q76NI1 1749 aa15.33■□□□□ 0.04
NEDD8-202ENST00000396828 USP21Q9UK80 565 aa15.32■□□□□ 0.04
NEDD8-202ENST00000396828 YTHDC2Q9H6S0 1430 aaKnown RBP15.32■□□□□ 0.04
NEDD8-202ENST00000396828 MYOM2P54296 1465 aa15.32■□□□□ 0.04
NEDD8-202ENST00000396828 CFAP70Q5T0N1 1121 aa15.31■□□□□ 0.04
NEDD8-202ENST00000396828 FNBP4Q8N3X1 1017 aaPredicted RBP15.31■□□□□ 0.04
NEDD8-202ENST00000396828 NPHP3Q7Z494 1330 aa15.31■□□□□ 0.04
NEDD8-202ENST00000396828 FMN2Q9NZ56 1722 aa15.31■□□□□ 0.04
NEDD8-202ENST00000396828 RGPD8O14715 1765 aaPredicted RBP15.3■□□□□ 0.04
NEDD8-202ENST00000396828 C14orf93Q9H972 538 aaKnown RBP15.3■□□□□ 0.04
NEDD8-202ENST00000396828 NRXN1Q9ULB1 1477 aa15.29■□□□□ 0.04
NEDD8-202ENST00000396828 RAB3GAP2Q9H2M9 1393 aa15.29■□□□□ 0.04
NEDD8-202ENST00000396828 BCL9LQ86UU0 1499 aa15.28■□□□□ 0.04
NEDD8-202ENST00000396828 ATRNO75882 1429 aa15.27■□□□□ 0.04
NEDD8-202ENST00000396828 MARF1Q9Y4F3 1742 aaKnown RBP15.27■□□□□ 0.04
NEDD8-202ENST00000396828 SAFB2Q14151 953 aaKnown RBP eCLIP15.26■□□□□ 0.03
NEDD8-202ENST00000396828 TRPC5Q9UL62 973 aaPredicted RBP15.26■□□□□ 0.03
NEDD8-202ENST00000396828 SPATA31A3Q5VYP0 1347 aa15.25■□□□□ 0.03
NEDD8-202ENST00000396828 SIRT1Q96EB6 747 aa15.25■□□□□ 0.03
NEDD8-202ENST00000396828 PCGF6Q9BYE7 350 aa15.25■□□□□ 0.03
NEDD8-202ENST00000396828 KRT28Q7Z3Y7 464 aa15.24■□□□□ 0.03
NEDD8-202ENST00000396828 PRAM1Q96QH2 718 aa15.24■□□□□ 0.03
NEDD8-202ENST00000396828 DHX57Q6P158 1386 aaKnown RBP15.23■□□□□ 0.03
NEDD8-202ENST00000396828 KIF1AQ12756 1690 aa15.22■□□□□ 0.03
NEDD8-202ENST00000396828 USP32Q8NFA0 1604 aa15.22■□□□□ 0.03
NEDD8-202ENST00000396828 PLEKHG5O94827 1062 aa15.22■□□□□ 0.03
NEDD8-202ENST00000396828 CABLES1Q8TDN4 633 aa15.22■□□□□ 0.03
NEDD8-202ENST00000396828 PHF8Q9UPP1 1060 aa15.22■□□□□ 0.03
NEDD8-202ENST00000396828 ADGRB1O14514 1584 aa15.21■□□□□ 0.03
NEDD8-202ENST00000396828 GJD4Q96KN9 370 aaPredicted RBP15.2■□□□□ 0.02
NEDD8-202ENST00000396828 SLIT2O94813 1529 aa15.19■□□□□ 0.02
NEDD8-202ENST00000396828 PMFBP1Q8TBY8 1022 aa15.19■□□□□ 0.02
NEDD8-202ENST00000396828 HIRIP3Q9BW71 556 aaPredicted RBP15.19■□□□□ 0.02
NEDD8-202ENST00000396828 TRAK1Q9UPV9 953 aa15.19■□□□□ 0.02
NEDD8-202ENST00000396828 KDM2AQ9Y2K7 1162 aa15.19■□□□□ 0.02
NEDD8-202ENST00000396828 ATAD2Q6PL18 1390 aa15.19■□□□□ 0.02
NEDD8-202ENST00000396828 GLI3P10071 1580 aa15.19■□□□□ 0.02
NEDD8-202ENST00000396828 DLC1Q96QB1 1528 aa15.18■□□□□ 0.02
NEDD8-202ENST00000396828 ACIN1Q9UKV3 1341 aaKnown RBP15.17■□□□□ 0.02
NEDD8-202ENST00000396828 TNS3Q68CZ2 1445 aa15.17■□□□□ 0.02
NEDD8-202ENST00000396828 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.17■□□□□ 0.02
NEDD8-202ENST00000396828 RALGAPBQ86X10 1494 aa15.17■□□□□ 0.02
NEDD8-202ENST00000396828 UNC5CLQ8IV45 518 aa15.17■□□□□ 0.02
NEDD8-202ENST00000396828 DCAF11Q8TEB1 546 aa15.17■□□□□ 0.02
NEDD8-202ENST00000396828 POGKQ9P215 609 aa15.17■□□□□ 0.02
NEDD8-202ENST00000396828 PRR36Q9H6K5 1346 aa15.17■□□□□ 0.02
NEDD8-202ENST00000396828 ABCA3Q99758 1704 aa15.16■□□□□ 0.02
NEDD8-202ENST00000396828 PSME1Q06323 249 aa15.15■□□□□ 0.02
NEDD8-202ENST00000396828 LMOD2Q6P5Q4 547 aa15.15■□□□□ 0.02
NEDD8-202ENST00000396828 ADGRB2O60241 1585 aa15.15■□□□□ 0.02
NEDD8-202ENST00000396828 MINK1Q8N4C8 1332 aaPredicted RBP15.15■□□□□ 0.02
NEDD8-202ENST00000396828 SBNO1A3KN83 1393 aa15.14■□□□□ 0.01
NEDD8-202ENST00000396828 BRWD3Q6RI45 1802 aa15.14■□□□□ 0.01
NEDD8-202ENST00000396828 PLCH1Q4KWH8 1693 aa15.13■□□□□ 0.01
NEDD8-202ENST00000396828 TRPM3Q9HCF6 1732 aaPredicted RBP15.13■□□□□ 0.01
NEDD8-202ENST00000396828 ANKARQ7Z5J8 1434 aa15.12■□□□□ 0.01
NEDD8-202ENST00000396828 FAM83GA6ND36 823 aa15.12■□□□□ 0.01
NEDD8-202ENST00000396828 HAP1P54257 671 aaPredicted RBP15.12■□□□□ 0.01
NEDD8-202ENST00000396828 WASLO00401 505 aaPredicted RBP15.1■□□□□ 0.01
NEDD8-202ENST00000396828 VPS72Q15906 364 aa15.1■□□□□ 0.01
NEDD8-202ENST00000396828 ALS2Q96Q42 1657 aa15.09■□□□□ 0.01
NEDD8-202ENST00000396828 SEPT12Q8IYM1 358 aa15.09■□□□□ 0.01
NEDD8-202ENST00000396828 ARHGEF10O15013 1369 aa15.09■□□□□ 0.01
NEDD8-202ENST00000396828 ARHGEF28Q8N1W1 1705 aaKnown RBP15.09■□□□□ 0.01
NEDD8-202ENST00000396828 NWD2Q9ULI1 1742 aa15.09■□□□□ 0.01
NEDD8-202ENST00000396828 TULP4Q9NRJ4 1543 aa15.08■□□□□ 0.01
NEDD8-202ENST00000396828 HRCP23327 699 aa15.08■□□□□ 0
NEDD8-202ENST00000396828 NRAPQ86VF7 1730 aa15.08■□□□□ 0
NEDD8-202ENST00000396828 ONECUT3O60422 494 aaPredicted RBP15.07■□□□□ 0
NEDD8-202ENST00000396828 CRYBG1Q9Y4K1 1723 aa15.06■□□□□ 0
NEDD8-202ENST00000396828 DEFB132Q7Z7B7 95 aa15.06■□□□□ 0
NEDD8-202ENST00000396828 CCDC125Q86Z20 511 aa15.06■□□□□ 0
NEDD8-202ENST00000396828 BTG4Q9NY30 223 aa15.06■□□□□ 0
NEDD8-202ENST00000396828 CCDC9Q9Y3X0 531 aaKnown RBP15.06■□□□□ 0
NEDD8-202ENST00000396828 ATP7BP35670 1465 aa15.05■□□□□ -0
NEDD8-202ENST00000396828 BLMP54132 1417 aaPredicted RBP15.04■□□□□ -0
NEDD8-202ENST00000396828 GPRASP1Q5JY77 1395 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms