RNA–Protein interactions for RNA: ENST00000395793.7

CXCL12-204, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 5 BASIC

Gene CXCL12, Length 665 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-204ENST00000395793 PLEKHH1Q9ULM0 1364 aa26.73■■□□□ 1.87
CXCL12-204ENST00000395793 NUTM2BA6NNL0 878 aaPredicted RBP26.73■■□□□ 1.87
CXCL12-204ENST00000395793 NUTM2EB1AL46 878 aaPredicted RBP26.73■■□□□ 1.87
CXCL12-204ENST00000395793 NUTM2AQ8IVF1 878 aaPredicted RBP26.73■■□□□ 1.87
CXCL12-204ENST00000395793 ABCC11Q96J66 1382 aa26.72■■□□□ 1.87
CXCL12-204ENST00000395793 WAPLQ7Z5K2 1190 aa26.72■■□□□ 1.87
CXCL12-204ENST00000395793 LRRC59Q96AG4 307 aaKnown RBP26.72■■□□□ 1.87
CXCL12-204ENST00000395793 YTHDC2Q9H6S0 1430 aaKnown RBP26.72■■□□□ 1.87
CXCL12-204ENST00000395793 FMN2Q9NZ56 1722 aa26.69■■□□□ 1.86
CXCL12-204ENST00000395793 SOS2Q07890 1332 aaPredicted RBP26.68■■□□□ 1.86
CXCL12-204ENST00000395793 C14orf93Q9H972 538 aaKnown RBP26.67■■□□□ 1.86
CXCL12-204ENST00000395793 CFAP70Q5T0N1 1121 aa26.65■■□□□ 1.86
CXCL12-204ENST00000395793 ZNF772Q68DY9 489 aaPredicted RBP26.65■■□□□ 1.86
CXCL12-204ENST00000395793 COL22A1Q8NFW1 1626 aaPredicted RBP26.63■■□□□ 1.85
CXCL12-204ENST00000395793 AFF2P51816 1311 aa26.63■■□□□ 1.85
CXCL12-204ENST00000395793 PXDNQ92626 1479 aa26.62■■□□□ 1.85
CXCL12-204ENST00000395793 NUTM2FA1L443 756 aa26.61■■□□□ 1.85
CXCL12-204ENST00000395793 ESCO1Q5FWF5 840 aa26.61■■□□□ 1.85
CXCL12-204ENST00000395793 RGPD8O14715 1765 aaPredicted RBP26.61■■□□□ 1.85
CXCL12-204ENST00000395793 ADGRB1O14514 1584 aa26.6■■□□□ 1.85
CXCL12-204ENST00000395793 HRCP23327 699 aa26.57■■□□□ 1.84
CXCL12-204ENST00000395793 SIRT1Q96EB6 747 aa26.57■■□□□ 1.84
CXCL12-204ENST00000395793 DHX57Q6P158 1386 aaKnown RBP26.57■■□□□ 1.84
CXCL12-204ENST00000395793 KIF1AQ12756 1690 aa26.57■■□□□ 1.84
CXCL12-204ENST00000395793 DLC1Q96QB1 1528 aa26.56■■□□□ 1.84
CXCL12-204ENST00000395793 C8orf37Q96NL8 207 aa26.56■■□□□ 1.84
CXCL12-204ENST00000395793 NPHP3Q7Z494 1330 aa26.56■■□□□ 1.84
CXCL12-204ENST00000395793 XPCQ01831 940 aaPredicted RBP26.55■■□□□ 1.84
CXCL12-204ENST00000395793 FOXO3O43524 673 aa26.54■■□□□ 1.84
CXCL12-204ENST00000395793 ADAMTS2O95450 1211 aa26.54■■□□□ 1.84
CXCL12-204ENST00000395793 CDK12Q9NYV4 1490 aaPredicted RBP26.52■■□□□ 1.84
CXCL12-204ENST00000395793 MARF1Q9Y4F3 1742 aaKnown RBP26.52■■□□□ 1.84
CXCL12-204ENST00000395793 USP32Q8NFA0 1604 aa26.51■■□□□ 1.83
CXCL12-204ENST00000395793 RXRBP28702 533 aa26.51■■□□□ 1.83
CXCL12-204ENST00000395793 PRAM1Q96QH2 718 aa26.51■■□□□ 1.83
CXCL12-204ENST00000395793 ADGRB2O60241 1585 aa26.5■■□□□ 1.83
CXCL12-204ENST00000395793 SAFB2Q14151 953 aaKnown RBP eCLIP26.5■■□□□ 1.83
CXCL12-204ENST00000395793 KDM2AQ9Y2K7 1162 aa26.49■■□□□ 1.83
CXCL12-204ENST00000395793 DCAF11Q8TEB1 546 aa26.48■■□□□ 1.83
CXCL12-204ENST00000395793 RGS12O14924 1447 aa26.47■■□□□ 1.83
CXCL12-204ENST00000395793 NGLY1Q96IV0 654 aa26.46■■□□□ 1.83
CXCL12-204ENST00000395793 QTRT2Q9H974 415 aaKnown RBP26.45■■□□□ 1.82
CXCL12-204ENST00000395793 ARHGEF28Q8N1W1 1705 aaKnown RBP26.43■■□□□ 1.82
CXCL12-204ENST00000395793 TRAK1Q9UPV9 953 aa26.43■■□□□ 1.82
CXCL12-204ENST00000395793 SPATA31A3Q5VYP0 1347 aa26.41■■□□□ 1.82
CXCL12-204ENST00000395793 RBM6P78332 1123 aaKnown RBP26.41■■□□□ 1.82
CXCL12-204ENST00000395793 POGKQ9P215 609 aa26.41■■□□□ 1.82
CXCL12-204ENST00000395793 PHF8Q9UPP1 1060 aa26.41■■□□□ 1.82
CXCL12-204ENST00000395793 FNBP4Q8N3X1 1017 aaPredicted RBP26.4■■□□□ 1.82
CXCL12-204ENST00000395793 ANKARQ7Z5J8 1434 aa26.39■■□□□ 1.82
CXCL12-204ENST00000395793 KRT28Q7Z3Y7 464 aa26.39■■□□□ 1.82
CXCL12-204ENST00000395793 UPF1Q92900 1129 aaKnown RBP eCLIP26.39■■□□□ 1.82
CXCL12-204ENST00000395793 USP21Q9UK80 565 aa26.39■■□□□ 1.82
CXCL12-204ENST00000395793 ABCA3Q99758 1704 aa26.39■■□□□ 1.81
CXCL12-204ENST00000395793 ATRNO75882 1429 aa26.39■■□□□ 1.81
CXCL12-204ENST00000395793 STAC3Q96MF2 364 aa26.37■■□□□ 1.81
CXCL12-204ENST00000395793 HIRIP3Q9BW71 556 aaPredicted RBP26.37■■□□□ 1.81
CXCL12-204ENST00000395793 TNS3Q68CZ2 1445 aa26.37■■□□□ 1.81
CXCL12-204ENST00000395793 BCL9LQ86UU0 1499 aa26.36■■□□□ 1.81
CXCL12-204ENST00000395793 TRPM3Q9HCF6 1732 aaPredicted RBP26.36■■□□□ 1.81
CXCL12-204ENST00000395793 MINK1Q8N4C8 1332 aaPredicted RBP26.36■■□□□ 1.81
CXCL12-204ENST00000395793 PRR36Q9H6K5 1346 aa26.35■■□□□ 1.81
CXCL12-204ENST00000395793 TULP4Q9NRJ4 1543 aa26.34■■□□□ 1.81
CXCL12-204ENST00000395793 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.34■■□□□ 1.81
CXCL12-204ENST00000395793 KIAA1210Q9ULL0 1709 aa26.34■■□□□ 1.81
CXCL12-204ENST00000395793 PMFBP1Q8TBY8 1022 aa26.32■■□□□ 1.8
CXCL12-204ENST00000395793 TRPC5Q9UL62 973 aaPredicted RBP26.32■■□□□ 1.8
CXCL12-204ENST00000395793 SBNO1A3KN83 1393 aa26.31■■□□□ 1.8
CXCL12-204ENST00000395793 SLIT2O94813 1529 aa26.3■■□□□ 1.8
CXCL12-204ENST00000395793 ALS2Q96Q42 1657 aa26.29■■□□□ 1.8
CXCL12-204ENST00000395793 WASLO00401 505 aaPredicted RBP26.28■■□□□ 1.8
CXCL12-204ENST00000395793 CABLES1Q8TDN4 633 aa26.28■■□□□ 1.8
CXCL12-204ENST00000395793 PLCH1Q4KWH8 1693 aa26.28■■□□□ 1.8
CXCL12-204ENST00000395793 PSME1Q06323 249 aa26.27■■□□□ 1.8
CXCL12-204ENST00000395793 ITSN1Q15811 1721 aa26.26■■□□□ 1.79
CXCL12-204ENST00000395793 GLI3P10071 1580 aa26.26■■□□□ 1.79
CXCL12-204ENST00000395793 ATP7BP35670 1465 aa26.26■■□□□ 1.79
CXCL12-204ENST00000395793 EIF3AQ14152 1382 aaKnown RBP26.26■■□□□ 1.79
CXCL12-204ENST00000395793 CRYBG1Q9Y4K1 1723 aa26.24■■□□□ 1.79
CXCL12-204ENST00000395793 ARHGEF10O15013 1369 aa26.23■■□□□ 1.79
CXCL12-204ENST00000395793 PLEKHG5O94827 1062 aa26.23■■□□□ 1.79
CXCL12-204ENST00000395793 TOPAZ1Q8N9V7 1692 aa26.22■■□□□ 1.79
CXCL12-204ENST00000395793 NBPF1Q3BBV0 1214 aa26.22■■□□□ 1.79
CXCL12-204ENST00000395793 NWD2Q9ULI1 1742 aa26.22■■□□□ 1.79
CXCL12-204ENST00000395793 LMOD2Q6P5Q4 547 aa26.21■■□□□ 1.79
CXCL12-204ENST00000395793 RALGAPBQ86X10 1494 aa26.2■■□□□ 1.78
CXCL12-204ENST00000395793 UNC5CLQ8IV45 518 aa26.2■■□□□ 1.78
CXCL12-204ENST00000395793 GJD4Q96KN9 370 aaPredicted RBP26.19■■□□□ 1.78
CXCL12-204ENST00000395793 NRAPQ86VF7 1730 aa26.18■■□□□ 1.78
CXCL12-204ENST00000395793 HAP1P54257 671 aaPredicted RBP26.17■■□□□ 1.78
CXCL12-204ENST00000395793 GPRASP1Q5JY77 1395 aa26.17■■□□□ 1.78
CXCL12-204ENST00000395793 ATAD2Q6PL18 1390 aa26.17■■□□□ 1.78
CXCL12-204ENST00000395793 NUDT16Q96DE0 195 aaKnown RBP26.16■■□□□ 1.78
CXCL12-204ENST00000395793 BRWD3Q6RI45 1802 aa26.16■■□□□ 1.78
CXCL12-204ENST00000395793 CDK19Q9BWU1 502 aa26.14■■□□□ 1.78
CXCL12-204ENST00000395793 NGDNQ8NEJ9 315 aaKnown RBP26.13■■□□□ 1.77
CXCL12-204ENST00000395793 SIN3AQ96ST3 1273 aa26.13■■□□□ 1.77
CXCL12-204ENST00000395793 TRPM1Q7Z4N2 1603 aa26.13■■□□□ 1.77
CXCL12-204ENST00000395793 QRICH2Q9H0J4 1663 aa26.12■■□□□ 1.77
CXCL12-204ENST00000395793 L3MBTL2Q969R5 705 aa26.12■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms