RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 LTV1Q96GA3 475 aaPredicted RBP19.43■□□□□ 0.7
SHANK1-204ENST00000391814 ZMYND15Q9H091 742 aa19.43■□□□□ 0.7
SHANK1-204ENST00000391814 CDCA7LQ96GN5 454 aa19.42■□□□□ 0.7
SHANK1-204ENST00000391814 ROCK1Q13464 1354 aa19.42■□□□□ 0.7
SHANK1-204ENST00000391814 KDM4AO75164 1064 aa19.42■□□□□ 0.7
SHANK1-204ENST00000391814 HDGFP51858 240 aaKnown RBP19.42■□□□□ 0.7
SHANK1-204ENST00000391814 ZHX1Q9UKY1 873 aaPredicted RBP19.42■□□□□ 0.7
SHANK1-204ENST00000391814 TRAK1Q9UPV9 953 aa19.41■□□□□ 0.7
SHANK1-204ENST00000391814 KIAA0754O94854 1291 aa19.41■□□□□ 0.7
SHANK1-204ENST00000391814 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.41■□□□□ 0.7
SHANK1-204ENST00000391814 KIF7Q2M1P5 1343 aa19.4■□□□□ 0.7
SHANK1-204ENST00000391814 NFXL1Q6ZNB6 911 aa19.4■□□□□ 0.7
SHANK1-204ENST00000391814 RIPK4P57078 832 aa19.4■□□□□ 0.7
SHANK1-204ENST00000391814 BAZ1AQ9NRL2 1556 aaPredicted RBP19.4■□□□□ 0.7
SHANK1-204ENST00000391814 AMPHP49418 695 aa19.39■□□□□ 0.69
SHANK1-204ENST00000391814 FIBPO43427 364 aa19.39■□□□□ 0.69
SHANK1-204ENST00000391814 CPLX2Q6PUV4 134 aaKnown RBP19.39■□□□□ 0.69
SHANK1-204ENST00000391814 FMNL2Q96PY5 1086 aa19.38■□□□□ 0.69
SHANK1-204ENST00000391814 SDF4Q9BRK5 362 aa19.38■□□□□ 0.69
SHANK1-204ENST00000391814 CECR2Q9BXF3 1484 aa19.38■□□□□ 0.69
SHANK1-204ENST00000391814 CT47B1P0C2W7 299 aaPredicted RBP19.38■□□□□ 0.69
SHANK1-204ENST00000391814 RUNDC1Q96C34 613 aa19.38■□□□□ 0.69
SHANK1-204ENST00000391814 HNRNPMP52272 730 aaKnown RBP eCLIP19.38■□□□□ 0.69
SHANK1-204ENST00000391814 DEF6Q9H4E7 631 aa19.38■□□□□ 0.69
SHANK1-204ENST00000391814 API5Q9BZZ5 524 aaKnown RBP19.37■□□□□ 0.69
SHANK1-204ENST00000391814 FAM193AP78312 1265 aa19.37■□□□□ 0.69
SHANK1-204ENST00000391814 FHOD3Q2V2M9 1422 aa19.37■□□□□ 0.69
SHANK1-204ENST00000391814 EIF2S2P20042 333 aaKnown RBP19.36■□□□□ 0.69
SHANK1-204ENST00000391814 MCM4P33991 863 aa19.36■□□□□ 0.69
SHANK1-204ENST00000391814 FAM177A1Q8N128 213 aaPredicted RBP19.36■□□□□ 0.69
SHANK1-204ENST00000391814 K7ELQ4 463 aaPredicted RBP19.36■□□□□ 0.69
SHANK1-204ENST00000391814 CEBPZQ03701 1054 aaKnown RBP19.36■□□□□ 0.69
SHANK1-204ENST00000391814 CGNQ9P2M7 1197 aaKnown RBP19.36■□□□□ 0.69
SHANK1-204ENST00000391814 ZSCAN30Q86W11 494 aa19.35■□□□□ 0.69
SHANK1-204ENST00000391814 NEK4P51957 841 aa19.35■□□□□ 0.69
SHANK1-204ENST00000391814 C9orf78Q9NZ63 289 aaPredicted RBP19.35■□□□□ 0.69
SHANK1-204ENST00000391814 PDCL3Q9H2J4 239 aa19.35■□□□□ 0.69
SHANK1-204ENST00000391814 CCDC144AA2RUR9 1427 aa19.34■□□□□ 0.69
SHANK1-204ENST00000391814 HSP90AB2PQ58FF8 381 aa19.34■□□□□ 0.69
SHANK1-204ENST00000391814 CCDC192P0DO97 292 aa19.34■□□□□ 0.69
SHANK1-204ENST00000391814 RABEP1Q15276 862 aa19.34■□□□□ 0.69
SHANK1-204ENST00000391814 CENPHQ9H3R5 247 aa19.34■□□□□ 0.69
SHANK1-204ENST00000391814 BRPF1P55201 1214 aaPredicted RBP19.34■□□□□ 0.69
SHANK1-204ENST00000391814 TRERF1Q96PN7 1200 aa19.34■□□□□ 0.69
SHANK1-204ENST00000391814 RAPGEF2Q9Y4G8 1499 aa19.34■□□□□ 0.69
SHANK1-204ENST00000391814 CNKSR2Q8WXI2 1034 aa19.34■□□□□ 0.69
SHANK1-204ENST00000391814 WASHC2AQ641Q2 1341 aa19.33■□□□□ 0.69
SHANK1-204ENST00000391814 NINLQ9Y2I6 1382 aa19.33■□□□□ 0.68
SHANK1-204ENST00000391814 SMARCE1Q969G3 411 aa19.33■□□□□ 0.68
SHANK1-204ENST00000391814 KINO60870 393 aaKnown RBP19.32■□□□□ 0.68
SHANK1-204ENST00000391814 AAMPQ13685 434 aa19.32■□□□□ 0.68
SHANK1-204ENST00000391814 NGEFQ8N5V2 710 aa19.32■□□□□ 0.68
SHANK1-204ENST00000391814 TNMDQ9H2S6 317 aa19.32■□□□□ 0.68
SHANK1-204ENST00000391814 EIF3JO75822 258 aaKnown RBP19.32■□□□□ 0.68
SHANK1-204ENST00000391814 XPCQ01831 940 aaPredicted RBP19.31■□□□□ 0.68
SHANK1-204ENST00000391814 GPATCH11Q8N954 259 aa19.31■□□□□ 0.68
SHANK1-204ENST00000391814 GTF2E1P29083 439 aaPredicted RBP19.31■□□□□ 0.68
SHANK1-204ENST00000391814 GIMAP7Q8NHV1 300 aa19.31■□□□□ 0.68
SHANK1-204ENST00000391814 C1orf115Q9H7X2 142 aa19.31■□□□□ 0.68
SHANK1-204ENST00000391814 CWC22Q9HCG8 908 aaKnown RBP19.31■□□□□ 0.68
SHANK1-204ENST00000391814 TCEAL9Q9UHQ7 104 aa19.31■□□□□ 0.68
SHANK1-204ENST00000391814 TRDNQ13061 729 aa19.3■□□□□ 0.68
SHANK1-204ENST00000391814 SERPINC1P01008 464 aa19.3■□□□□ 0.68
SHANK1-204ENST00000391814 BRD4O60885 1362 aaPredicted RBP19.3■□□□□ 0.68
SHANK1-204ENST00000391814 ADAMTS8Q9UP79 889 aa19.3■□□□□ 0.68
SHANK1-204ENST00000391814 CCDC102AQ96A19 550 aa19.3■□□□□ 0.68
SHANK1-204ENST00000391814 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.29■□□□□ 0.68
SHANK1-204ENST00000391814 NUTM2FA1L443 756 aa19.29■□□□□ 0.68
SHANK1-204ENST00000391814 ERC2O15083 957 aa19.29■□□□□ 0.68
SHANK1-204ENST00000391814 PSMA5P28066 241 aa19.29■□□□□ 0.68
SHANK1-204ENST00000391814 LRRFIP1Q32MZ4 808 aaKnown RBP19.29■□□□□ 0.68
SHANK1-204ENST00000391814 KLHL34Q8N239 644 aa19.29■□□□□ 0.68
SHANK1-204ENST00000391814 USP8P40818 1118 aa19.29■□□□□ 0.68
SHANK1-204ENST00000391814 DIAPH1O60610 1272 aaKnown RBP19.29■□□□□ 0.68
SHANK1-204ENST00000391814 SAFBQ15424 915 aaKnown RBP eCLIP19.29■□□□□ 0.68
SHANK1-204ENST00000391814 SYCE3A1L190 88 aa19.28■□□□□ 0.68
SHANK1-204ENST00000391814 IBSPP21815 317 aaPredicted RBP19.28■□□□□ 0.68
SHANK1-204ENST00000391814 EPS15P42566 896 aa19.28■□□□□ 0.68
SHANK1-204ENST00000391814 G3BP1Q13283 466 aaKnown RBP eCLIP19.28■□□□□ 0.68
SHANK1-204ENST00000391814 MYO6Q9UM54 1294 aa19.28■□□□□ 0.68
SHANK1-204ENST00000391814 SMG6Q86US8 1419 aaKnown RBP19.28■□□□□ 0.68
SHANK1-204ENST00000391814 ERLIN1O75477 346 aa19.28■□□□□ 0.68
SHANK1-204ENST00000391814 CNTROBQ8N137 903 aa19.28■□□□□ 0.68
SHANK1-204ENST00000391814 PPP4R3BQ5MIZ7 849 aa19.28■□□□□ 0.68
SHANK1-204ENST00000391814 GOLGA6L10A6NI86 522 aa19.28■□□□□ 0.68
SHANK1-204ENST00000391814 FKBP5Q13451 457 aaPredicted RBP19.28■□□□□ 0.68
SHANK1-204ENST00000391814 ERICH2A1L162 156 aa19.27■□□□□ 0.68
SHANK1-204ENST00000391814 SPDYE4A6NLX3 237 aa19.27■□□□□ 0.68
SHANK1-204ENST00000391814 CT47A1Q5JQC4 288 aaPredicted RBP19.27■□□□□ 0.68
SHANK1-204ENST00000391814 BCAR3O75815 825 aa19.27■□□□□ 0.67
SHANK1-204ENST00000391814 FILIP1LQ4L180 1135 aa19.26■□□□□ 0.67
SHANK1-204ENST00000391814 TRIM34Q9BYJ4 488 aa19.26■□□□□ 0.67
SHANK1-204ENST00000391814 MCM2P49736 904 aa19.25■□□□□ 0.67
SHANK1-204ENST00000391814 SAMD1Q6SPF0 538 aaPredicted RBP19.25■□□□□ 0.67
SHANK1-204ENST00000391814 COG3Q96JB2 828 aa19.25■□□□□ 0.67
SHANK1-204ENST00000391814 NGDNQ8NEJ9 315 aaKnown RBP19.25■□□□□ 0.67
SHANK1-204ENST00000391814 DHX16O60231 1041 aaKnown RBP19.25■□□□□ 0.67
SHANK1-204ENST00000391814 LRRCC1Q9C099 1032 aa19.24■□□□□ 0.67
SHANK1-204ENST00000391814 ZNF396Q96N95 335 aaPredicted RBP19.23■□□□□ 0.67
SHANK1-204ENST00000391814 KIF3BO15066 747 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms