RNA–Protein interactions for RNA: ENST00000381089.7

VCX3A-201, Transcript of variable charge X-linked 3A, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VCX3A, Length 995 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-201ENST00000381089 ESCO1Q5FWF5 840 aa23.96■■□□□ 1.43
VCX3A-201ENST00000381089 CDC42BPGQ6DT37 1551 aa23.95■■□□□ 1.43
VCX3A-201ENST00000381089 CCDC144AA2RUR9 1427 aa23.94■■□□□ 1.42
VCX3A-201ENST00000381089 LRPPRCP42704 1394 aaKnown RBP23.93■■□□□ 1.42
VCX3A-201ENST00000381089 ATAD2Q6PL18 1390 aa23.93■■□□□ 1.42
VCX3A-201ENST00000381089 COL22A1Q8NFW1 1626 aaPredicted RBP23.93■■□□□ 1.42
VCX3A-201ENST00000381089 FNBP4Q8N3X1 1017 aaPredicted RBP23.92■■□□□ 1.42
VCX3A-201ENST00000381089 ANKRD30BQ9BXX2 1392 aa23.91■■□□□ 1.42
VCX3A-201ENST00000381089 FOXD1Q16676 465 aa23.89■■□□□ 1.41
VCX3A-201ENST00000381089 RGL3Q3MIN7 710 aa23.89■■□□□ 1.41
VCX3A-201ENST00000381089 ADGRF5Q8IZF2 1346 aa23.88■■□□□ 1.41
VCX3A-201ENST00000381089 STK26Q9P289 416 aa23.88■■□□□ 1.41
VCX3A-201ENST00000381089 MYOM2P54296 1465 aa23.87■■□□□ 1.41
VCX3A-201ENST00000381089 TECPR2O15040 1411 aa23.87■■□□□ 1.41
VCX3A-201ENST00000381089 FOXO3O43524 673 aa23.87■■□□□ 1.41
VCX3A-201ENST00000381089 PXDNQ92626 1479 aa23.87■■□□□ 1.41
VCX3A-201ENST00000381089 ATRNO75882 1429 aa23.86■■□□□ 1.41
VCX3A-201ENST00000381089 ABCC11Q96J66 1382 aa23.84■■□□□ 1.41
VCX3A-201ENST00000381089 WAPLQ7Z5K2 1190 aa23.84■■□□□ 1.41
VCX3A-201ENST00000381089 SPATA31E1Q6ZUB1 1445 aa23.84■■□□□ 1.41
VCX3A-201ENST00000381089 NUTM2FA1L443 756 aa23.83■■□□□ 1.41
VCX3A-201ENST00000381089 XPCQ01831 940 aaPredicted RBP23.83■■□□□ 1.41
VCX3A-201ENST00000381089 KNDC1Q76NI1 1749 aa23.82■■□□□ 1.4
VCX3A-201ENST00000381089 MPHOSPH9Q99550 1183 aa23.82■■□□□ 1.4
VCX3A-201ENST00000381089 IFT172Q9UG01 1749 aa23.81■■□□□ 1.4
VCX3A-201ENST00000381089 MARF1Q9Y4F3 1742 aaKnown RBP23.81■■□□□ 1.4
VCX3A-201ENST00000381089 ACIN1Q9UKV3 1341 aaKnown RBP23.81■■□□□ 1.4
VCX3A-201ENST00000381089 PIK3C2GO75747 1445 aa23.8■■□□□ 1.4
VCX3A-201ENST00000381089 TMEM132EQ6IEE7 984 aa23.8■■□□□ 1.4
VCX3A-201ENST00000381089 BCL9LQ86UU0 1499 aa23.79■■□□□ 1.4
VCX3A-201ENST00000381089 KIF1AQ12756 1690 aa23.79■■□□□ 1.4
VCX3A-201ENST00000381089 CCDC125Q86Z20 511 aa23.78■■□□□ 1.4
VCX3A-201ENST00000381089 YTHDC2Q9H6S0 1430 aaKnown RBP23.77■■□□□ 1.4
VCX3A-201ENST00000381089 GJD4Q96KN9 370 aaPredicted RBP23.77■■□□□ 1.4
VCX3A-201ENST00000381089 PLEKHH1Q9ULM0 1364 aa23.77■■□□□ 1.4
VCX3A-201ENST00000381089 FMN2Q9NZ56 1722 aa23.76■■□□□ 1.39
VCX3A-201ENST00000381089 SIRT1Q96EB6 747 aa23.75■■□□□ 1.39
VCX3A-201ENST00000381089 ZRANB1Q9UGI0 708 aa23.75■■□□□ 1.39
VCX3A-201ENST00000381089 SPATA31A3Q5VYP0 1347 aa23.75■■□□□ 1.39
VCX3A-201ENST00000381089 HAP1P54257 671 aaPredicted RBP23.74■■□□□ 1.39
VCX3A-201ENST00000381089 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.73■■□□□ 1.39
VCX3A-201ENST00000381089 PSME1Q06323 249 aa23.73■■□□□ 1.39
VCX3A-201ENST00000381089 KRT28Q7Z3Y7 464 aa23.73■■□□□ 1.39
VCX3A-201ENST00000381089 UNC5CLQ8IV45 518 aa23.73■■□□□ 1.39
VCX3A-201ENST00000381089 DHX57Q6P158 1386 aaKnown RBP23.72■■□□□ 1.39
VCX3A-201ENST00000381089 EP400Q96L91 3159 aa23.72■■□□□ 1.39
VCX3A-201ENST00000381089 C14orf93Q9H972 538 aaKnown RBP23.71■■□□□ 1.39
VCX3A-201ENST00000381089 PHF8Q9UPP1 1060 aa23.7■■□□□ 1.38
VCX3A-201ENST00000381089 SLIT2O94813 1529 aa23.69■■□□□ 1.38
VCX3A-201ENST00000381089 TNS3Q68CZ2 1445 aa23.68■■□□□ 1.38
VCX3A-201ENST00000381089 USP32Q8NFA0 1604 aa23.68■■□□□ 1.38
VCX3A-201ENST00000381089 SRCAPQ6ZRS2 3230 aa23.68■■□□□ 1.38
VCX3A-201ENST00000381089 RALGAPBQ86X10 1494 aa23.68■■□□□ 1.38
VCX3A-201ENST00000381089 NRXN1Q9ULB1 1477 aa23.65■■□□□ 1.38
VCX3A-201ENST00000381089 CFAP70Q5T0N1 1121 aa23.65■■□□□ 1.38
VCX3A-201ENST00000381089 ARHGEF10O15013 1369 aa23.65■■□□□ 1.38
VCX3A-201ENST00000381089 LMOD2Q6P5Q4 547 aa23.64■■□□□ 1.37
VCX3A-201ENST00000381089 PRAM1Q96QH2 718 aa23.64■■□□□ 1.37
VCX3A-201ENST00000381089 POGKQ9P215 609 aa23.64■■□□□ 1.37
VCX3A-201ENST00000381089 SBNO1A3KN83 1393 aa23.64■■□□□ 1.37
VCX3A-201ENST00000381089 GLI3P10071 1580 aa23.63■■□□□ 1.37
VCX3A-201ENST00000381089 RGPD8O14715 1765 aaPredicted RBP23.63■■□□□ 1.37
VCX3A-201ENST00000381089 BLMP54132 1417 aaPredicted RBP23.62■■□□□ 1.37
VCX3A-201ENST00000381089 SF3B2Q13435 895 aaKnown RBP23.62■■□□□ 1.37
VCX3A-201ENST00000381089 SAFB2Q14151 953 aaKnown RBP eCLIP23.62■■□□□ 1.37
VCX3A-201ENST00000381089 VPS72Q15906 364 aa23.61■■□□□ 1.37
VCX3A-201ENST00000381089 CCDC9Q9Y3X0 531 aaKnown RBP23.61■■□□□ 1.37
VCX3A-201ENST00000381089 PLEKHG5O94827 1062 aa23.6■■□□□ 1.37
VCX3A-201ENST00000381089 ANKARQ7Z5J8 1434 aa23.59■■□□□ 1.37
VCX3A-201ENST00000381089 DLC1Q96QB1 1528 aa23.59■■□□□ 1.37
VCX3A-201ENST00000381089 CABLES1Q8TDN4 633 aa23.59■■□□□ 1.37
VCX3A-201ENST00000381089 NWD2Q9ULI1 1742 aa23.59■■□□□ 1.37
VCX3A-201ENST00000381089 SEPT12Q8IYM1 358 aa23.58■■□□□ 1.37
VCX3A-201ENST00000381089 EIF3AQ14152 1382 aaKnown RBP23.57■■□□□ 1.36
VCX3A-201ENST00000381089 PLCH1Q4KWH8 1693 aa23.57■■□□□ 1.36
VCX3A-201ENST00000381089 PMFBP1Q8TBY8 1022 aa23.56■■□□□ 1.36
VCX3A-201ENST00000381089 BRWD3Q6RI45 1802 aa23.54■■□□□ 1.36
VCX3A-201ENST00000381089 GPRASP1Q5JY77 1395 aa23.54■■□□□ 1.36
VCX3A-201ENST00000381089 ABCA3Q99758 1704 aa23.54■■□□□ 1.36
VCX3A-201ENST00000381089 ADGRB2O60241 1585 aa23.54■■□□□ 1.36
VCX3A-201ENST00000381089 A0A0G2JS52 829 aa23.52■■□□□ 1.36
VCX3A-201ENST00000381089 ONECUT3O60422 494 aaPredicted RBP23.52■■□□□ 1.36
VCX3A-201ENST00000381089 MYT1Q01538 1121 aa23.52■■□□□ 1.36
VCX3A-201ENST00000381089 KRT27Q7Z3Y8 459 aa23.52■■□□□ 1.36
VCX3A-201ENST00000381089 TRAK1Q9UPV9 953 aa23.51■■□□□ 1.35
VCX3A-201ENST00000381089 FAM83GA6ND36 823 aa23.5■■□□□ 1.35
VCX3A-201ENST00000381089 RAB3GAP2Q9H2M9 1393 aa23.5■■□□□ 1.35
VCX3A-201ENST00000381089 ADGRB1O14514 1584 aa23.49■■□□□ 1.35
VCX3A-201ENST00000381089 DEFB132Q7Z7B7 95 aa23.49■■□□□ 1.35
VCX3A-201ENST00000381089 STAC3Q96MF2 364 aa23.49■■□□□ 1.35
VCX3A-201ENST00000381089 HIRIP3Q9BW71 556 aaPredicted RBP23.49■■□□□ 1.35
VCX3A-201ENST00000381089 MINK1Q8N4C8 1332 aaPredicted RBP23.48■■□□□ 1.35
VCX3A-201ENST00000381089 BTG4Q9NY30 223 aa23.47■■□□□ 1.35
VCX3A-201ENST00000381089 TULP4Q9NRJ4 1543 aa23.47■■□□□ 1.35
VCX3A-201ENST00000381089 DCAF11Q8TEB1 546 aa23.46■■□□□ 1.35
VCX3A-201ENST00000381089 KDM2AQ9Y2K7 1162 aa23.46■■□□□ 1.35
VCX3A-201ENST00000381089 TRPM3Q9HCF6 1732 aaPredicted RBP23.45■■□□□ 1.34
VCX3A-201ENST00000381089 WASLO00401 505 aaPredicted RBP23.45■■□□□ 1.34
VCX3A-201ENST00000381089 NGDNQ8NEJ9 315 aaKnown RBP23.45■■□□□ 1.34
VCX3A-201ENST00000381089 COL14A1Q05707 1796 aaKnown RBP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms