RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 ALKQ9UM73 1620 aa26.76■■□□□ 1.88
VSX1-202ENST00000376709 RIMS2Q9UQ26 1411 aa26.75■■□□□ 1.87
VSX1-202ENST00000376709 PUS7Q96PZ0 661 aaKnown RBP26.75■■□□□ 1.87
VSX1-202ENST00000376709 PLEKHH1Q9ULM0 1364 aa26.74■■□□□ 1.87
VSX1-202ENST00000376709 MORC1Q86VD1 984 aa26.74■■□□□ 1.87
VSX1-202ENST00000376709 YTHDC2Q9H6S0 1430 aaKnown RBP26.73■■□□□ 1.87
VSX1-202ENST00000376709 PTPRMP28827 1452 aa26.72■■□□□ 1.87
VSX1-202ENST00000376709 USP32Q8NFA0 1604 aa26.72■■□□□ 1.87
VSX1-202ENST00000376709 CCDC146Q8IYE0 955 aa26.71■■□□□ 1.87
VSX1-202ENST00000376709 CGNL1Q0VF96 1302 aa26.7■■□□□ 1.87
VSX1-202ENST00000376709 CABP2Q9NPB3 220 aa26.7■■□□□ 1.87
VSX1-202ENST00000376709 PRAM1Q96QH2 718 aa26.68■■□□□ 1.86
VSX1-202ENST00000376709 POLR3AO14802 1390 aaPredicted RBP26.68■■□□□ 1.86
VSX1-202ENST00000376709 ANKRD36BQ8N2N9 1353 aa26.68■■□□□ 1.86
VSX1-202ENST00000376709 TNNT2P45379 298 aaPredicted RBP26.68■■□□□ 1.86
VSX1-202ENST00000376709 TNRQ92752 1358 aa26.67■■□□□ 1.86
VSX1-202ENST00000376709 ZNF521Q96K83 1311 aa26.67■■□□□ 1.86
VSX1-202ENST00000376709 GOLGA2Q08379 1002 aa26.67■■□□□ 1.86
VSX1-202ENST00000376709 SRPK2P78362 688 aaKnown RBP26.65■■□□□ 1.86
VSX1-202ENST00000376709 POGKQ9P215 609 aa26.65■■□□□ 1.86
VSX1-202ENST00000376709 EXOC6Q8TAG9 804 aa26.65■■□□□ 1.86
VSX1-202ENST00000376709 MINK1Q8N4C8 1332 aaPredicted RBP26.64■■□□□ 1.86
VSX1-202ENST00000376709 APAF1O14727 1248 aa26.64■■□□□ 1.85
VSX1-202ENST00000376709 TRHP20396 242 aaPredicted RBP26.64■■□□□ 1.85
VSX1-202ENST00000376709 DUSP27Q5VZP5 1158 aa26.63■■□□□ 1.85
VSX1-202ENST00000376709 SETD1AO15047 1707 aaKnown RBP26.63■■□□□ 1.85
VSX1-202ENST00000376709 NINLQ9Y2I6 1382 aa26.62■■□□□ 1.85
VSX1-202ENST00000376709 NSD2O96028 1365 aa26.61■■□□□ 1.85
VSX1-202ENST00000376709 PLIN1O60240 522 aa26.6■■□□□ 1.85
VSX1-202ENST00000376709 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.6■■□□□ 1.85
VSX1-202ENST00000376709 NRXN3Q9Y4C0 1643 aa26.59■■□□□ 1.85
VSX1-202ENST00000376709 SHPRHQ149N8 1683 aa26.59■■□□□ 1.85
VSX1-202ENST00000376709 ATAD2Q6PL18 1390 aa26.58■■□□□ 1.85
VSX1-202ENST00000376709 A0A1W2PP64 1363 aa26.58■■□□□ 1.84
VSX1-202ENST00000376709 SLFN5Q08AF3 891 aa26.57■■□□□ 1.84
VSX1-202ENST00000376709 NGEFQ8N5V2 710 aa26.57■■□□□ 1.84
VSX1-202ENST00000376709 UBR1Q8IWV7 1749 aa26.56■■□□□ 1.84
VSX1-202ENST00000376709 MTHFSP49914 203 aa26.56■■□□□ 1.84
VSX1-202ENST00000376709 CFAP53Q96M91 514 aa26.56■■□□□ 1.84
VSX1-202ENST00000376709 CEBPAP49715 358 aaPredicted RBP26.55■■□□□ 1.84
VSX1-202ENST00000376709 DLC1Q96QB1 1528 aa26.55■■□□□ 1.84
VSX1-202ENST00000376709 METP08581 1390 aa26.53■■□□□ 1.84
VSX1-202ENST00000376709 ABCC11Q96J66 1382 aa26.53■■□□□ 1.84
VSX1-202ENST00000376709 WAPLQ7Z5K2 1190 aa26.53■■□□□ 1.84
VSX1-202ENST00000376709 TERF2IPQ9NYB0 399 aa26.53■■□□□ 1.84
VSX1-202ENST00000376709 TMEM2Q9UHN6 1383 aa26.52■■□□□ 1.84
VSX1-202ENST00000376709 CDK19Q9BWU1 502 aa26.51■■□□□ 1.83
VSX1-202ENST00000376709 HDGFP51858 240 aaKnown RBP26.5■■□□□ 1.83
VSX1-202ENST00000376709 E9PSI1 815 aa26.5■■□□□ 1.83
VSX1-202ENST00000376709 TRMT2AQ8IZ69 625 aaKnown RBP26.5■■□□□ 1.83
VSX1-202ENST00000376709 FANCIQ9NVI1 1328 aa26.5■■□□□ 1.83
VSX1-202ENST00000376709 MYT1Q01538 1121 aa26.49■■□□□ 1.83
VSX1-202ENST00000376709 NKTRP30414 1462 aaKnown RBP26.49■■□□□ 1.83
VSX1-202ENST00000376709 CRBNQ96SW2 442 aa26.48■■□□□ 1.83
VSX1-202ENST00000376709 SPINK5Q9NQ38 1064 aaPredicted RBP26.48■■□□□ 1.83
VSX1-202ENST00000376709 PLPPR3Q6T4P5 718 aa26.48■■□□□ 1.83
VSX1-202ENST00000376709 C3P01024 1663 aa26.47■■□□□ 1.83
VSX1-202ENST00000376709 RUNDC1Q96C34 613 aa26.47■■□□□ 1.83
VSX1-202ENST00000376709 ANP32EQ9BTT0 268 aa26.47■■□□□ 1.83
VSX1-202ENST00000376709 NLRP1Q9C000 1473 aa26.47■■□□□ 1.83
VSX1-202ENST00000376709 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.46■■□□□ 1.83
VSX1-202ENST00000376709 FER1L4A9Z1Z3 1794 aa26.46■■□□□ 1.83
VSX1-202ENST00000376709 CD163L1Q9NR16 1453 aa26.46■■□□□ 1.83
VSX1-202ENST00000376709 GGNBP2Q9H3C7 697 aa26.46■■□□□ 1.83
VSX1-202ENST00000376709 HDGFL2Q7Z4V5 671 aaPredicted RBP26.45■■□□□ 1.82
VSX1-202ENST00000376709 MSH5O43196 834 aa26.44■■□□□ 1.82
VSX1-202ENST00000376709 WWC1Q8IX03 1113 aa26.44■■□□□ 1.82
VSX1-202ENST00000376709 C20orf194Q5TEA3 1177 aa26.44■■□□□ 1.82
VSX1-202ENST00000376709 ANKRD26Q9UPS8 1709 aa26.43■■□□□ 1.82
VSX1-202ENST00000376709 NEUROD2Q15784 382 aa26.43■■□□□ 1.82
VSX1-202ENST00000376709 TXNDC2Q86VQ3 553 aa26.43■■□□□ 1.82
VSX1-202ENST00000376709 DMRT2Q9Y5R5 561 aa26.43■■□□□ 1.82
VSX1-202ENST00000376709 TCP11L2Q8N4U5 519 aa26.41■■□□□ 1.82
VSX1-202ENST00000376709 CABP1Q9NZU7 370 aa26.41■■□□□ 1.82
VSX1-202ENST00000376709 IQSEC2Q5JU85 1478 aa26.41■■□□□ 1.82
VSX1-202ENST00000376709 LTKP29376 864 aa26.41■■□□□ 1.82
VSX1-202ENST00000376709 FYB1O15117 783 aa26.4■■□□□ 1.82
VSX1-202ENST00000376709 RRP7AQ9Y3A4 280 aaKnown RBP26.4■■□□□ 1.82
VSX1-202ENST00000376709 KNDC1Q76NI1 1749 aa26.4■■□□□ 1.82
VSX1-202ENST00000376709 MED14O60244 1454 aa26.4■■□□□ 1.82
VSX1-202ENST00000376709 U2AF1L5P0DN76 240 aaPredicted RBP26.39■■□□□ 1.82
VSX1-202ENST00000376709 U2AF1Q01081 240 aaKnown RBP eCLIP26.39■■□□□ 1.82
VSX1-202ENST00000376709 ADAMTS13Q76LX8 1427 aa26.39■■□□□ 1.81
VSX1-202ENST00000376709 TECPR2O15040 1411 aa26.38■■□□□ 1.81
VSX1-202ENST00000376709 PLEKHG1Q9ULL1 1385 aa26.37■■□□□ 1.81
VSX1-202ENST00000376709 KIF20BQ96Q89 1820 aa26.37■■□□□ 1.81
VSX1-202ENST00000376709 CPS1P31327 1500 aa26.36■■□□□ 1.81
VSX1-202ENST00000376709 FAM135BQ49AJ0 1406 aa26.36■■□□□ 1.81
VSX1-202ENST00000376709 WASLO00401 505 aaPredicted RBP26.34■■□□□ 1.81
VSX1-202ENST00000376709 ATP7BP35670 1465 aa26.33■■□□□ 1.81
VSX1-202ENST00000376709 SIRT1Q96EB6 747 aa26.32■■□□□ 1.8
VSX1-202ENST00000376709 U2SURPO15042 1029 aaKnown RBP26.31■■□□□ 1.8
VSX1-202ENST00000376709 BCAR3O75815 825 aa26.31■■□□□ 1.8
VSX1-202ENST00000376709 PHF23Q9BUL5 403 aaPredicted RBP26.31■■□□□ 1.8
VSX1-202ENST00000376709 EID1Q9Y6B2 187 aa26.31■■□□□ 1.8
VSX1-202ENST00000376709 CCDC27Q2M243 656 aa26.31■■□□□ 1.8
VSX1-202ENST00000376709 WDR63Q8IWG1 891 aa26.31■■□□□ 1.8
VSX1-202ENST00000376709 ROBO2Q9HCK4 1378 aa26.31■■□□□ 1.8
VSX1-202ENST00000376709 SLIT1O75093 1534 aa26.3■■□□□ 1.8
VSX1-202ENST00000376709 TCERG1O14776 1098 aaKnown RBP26.3■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms