RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 CDC42BPGQ6DT37 1551 aa31.09■■■□□ 2.57
VSX1-201ENST00000376707 WAPLQ7Z5K2 1190 aa31.08■■■□□ 2.57
VSX1-201ENST00000376707 ABCC11Q96J66 1382 aa31.07■■■□□ 2.56
VSX1-201ENST00000376707 LAMC1P11047 1609 aa31.06■■■□□ 2.56
VSX1-201ENST00000376707 SOS2Q07890 1332 aaPredicted RBP31.06■■■□□ 2.56
VSX1-201ENST00000376707 ESCO1Q5FWF5 840 aa31.05■■■□□ 2.56
VSX1-201ENST00000376707 AFF2P51816 1311 aa31.04■■■□□ 2.56
VSX1-201ENST00000376707 C8orf37Q96NL8 207 aa31.03■■■□□ 2.56
VSX1-201ENST00000376707 YTHDC2Q9H6S0 1430 aaKnown RBP31.03■■■□□ 2.56
VSX1-201ENST00000376707 RXRBP28702 533 aa31.01■■■□□ 2.55
VSX1-201ENST00000376707 C14orf93Q9H972 538 aaKnown RBP31.01■■■□□ 2.55
VSX1-201ENST00000376707 PLEKHH1Q9ULM0 1364 aa31.01■■■□□ 2.55
VSX1-201ENST00000376707 KNDC1Q76NI1 1749 aa31.01■■■□□ 2.55
VSX1-201ENST00000376707 MYOM2P54296 1465 aa31.01■■■□□ 2.55
VSX1-201ENST00000376707 NPHP3Q7Z494 1330 aa30.99■■■□□ 2.55
VSX1-201ENST00000376707 NRXN1Q9ULB1 1477 aa30.99■■■□□ 2.55
VSX1-201ENST00000376707 NUTM2FA1L443 756 aa30.98■■■□□ 2.55
VSX1-201ENST00000376707 CFAP70Q5T0N1 1121 aa30.98■■■□□ 2.55
VSX1-201ENST00000376707 ADAMTS2O95450 1211 aa30.97■■■□□ 2.55
VSX1-201ENST00000376707 DHX57Q6P158 1386 aaKnown RBP30.96■■■□□ 2.55
VSX1-201ENST00000376707 SIRT1Q96EB6 747 aa30.95■■■□□ 2.55
VSX1-201ENST00000376707 FOXO3O43524 673 aa30.94■■■□□ 2.54
VSX1-201ENST00000376707 NGLY1Q96IV0 654 aa30.94■■■□□ 2.54
VSX1-201ENST00000376707 PXDNQ92626 1479 aa30.9■■■□□ 2.54
VSX1-201ENST00000376707 XPCQ01831 940 aaPredicted RBP30.9■■■□□ 2.54
VSX1-201ENST00000376707 QTRT2Q9H974 415 aaKnown RBP30.9■■■□□ 2.54
VSX1-201ENST00000376707 CDK12Q9NYV4 1490 aaPredicted RBP30.89■■■□□ 2.54
VSX1-201ENST00000376707 HRCP23327 699 aa30.89■■■□□ 2.54
VSX1-201ENST00000376707 FMN2Q9NZ56 1722 aa30.87■■■□□ 2.53
VSX1-201ENST00000376707 RBM6P78332 1123 aaKnown RBP30.86■■■□□ 2.53
VSX1-201ENST00000376707 PRAM1Q96QH2 718 aa30.86■■■□□ 2.53
VSX1-201ENST00000376707 COL22A1Q8NFW1 1626 aaPredicted RBP30.86■■■□□ 2.53
VSX1-201ENST00000376707 SAFB2Q14151 953 aaKnown RBP eCLIP30.85■■■□□ 2.53
VSX1-201ENST00000376707 KDM2AQ9Y2K7 1162 aa30.84■■■□□ 2.53
VSX1-201ENST00000376707 DCAF11Q8TEB1 546 aa30.83■■■□□ 2.53
VSX1-201ENST00000376707 POGKQ9P215 609 aa30.83■■■□□ 2.53
VSX1-201ENST00000376707 USP21Q9UK80 565 aa30.82■■■□□ 2.52
VSX1-201ENST00000376707 KIF1AQ12756 1690 aa30.81■■■□□ 2.52
VSX1-201ENST00000376707 DLC1Q96QB1 1528 aa30.8■■■□□ 2.52
VSX1-201ENST00000376707 UPF1Q92900 1129 aaKnown RBP eCLIP30.8■■■□□ 2.52
VSX1-201ENST00000376707 FNBP4Q8N3X1 1017 aaPredicted RBP30.78■■■□□ 2.52
VSX1-201ENST00000376707 RGS12O14924 1447 aa30.78■■■□□ 2.52
VSX1-201ENST00000376707 ADGRB1O14514 1584 aa30.78■■■□□ 2.52
VSX1-201ENST00000376707 KRT28Q7Z3Y7 464 aa30.77■■■□□ 2.52
VSX1-201ENST00000376707 STAC3Q96MF2 364 aa30.77■■■□□ 2.52
VSX1-201ENST00000376707 TRPC5Q9UL62 973 aaPredicted RBP30.77■■■□□ 2.52
VSX1-201ENST00000376707 PHF8Q9UPP1 1060 aa30.77■■■□□ 2.52
VSX1-201ENST00000376707 TRAK1Q9UPV9 953 aa30.76■■■□□ 2.51
VSX1-201ENST00000376707 SPATA31A3Q5VYP0 1347 aa30.75■■■□□ 2.51
VSX1-201ENST00000376707 PSME1Q06323 249 aa30.72■■■□□ 2.51
VSX1-201ENST00000376707 ANKARQ7Z5J8 1434 aa30.69■■■□□ 2.5
VSX1-201ENST00000376707 ADGRB2O60241 1585 aa30.68■■■□□ 2.5
VSX1-201ENST00000376707 ATRNO75882 1429 aa30.68■■■□□ 2.5
VSX1-201ENST00000376707 HIRIP3Q9BW71 556 aaPredicted RBP30.68■■■□□ 2.5
VSX1-201ENST00000376707 RGPD8O14715 1765 aaPredicted RBP30.68■■■□□ 2.5
VSX1-201ENST00000376707 MINK1Q8N4C8 1332 aaPredicted RBP30.68■■■□□ 2.5
VSX1-201ENST00000376707 TNS3Q68CZ2 1445 aa30.67■■■□□ 2.5
VSX1-201ENST00000376707 BCL9LQ86UU0 1499 aa30.65■■■□□ 2.5
VSX1-201ENST00000376707 HAP1P54257 671 aaPredicted RBP30.65■■■□□ 2.5
VSX1-201ENST00000376707 PMFBP1Q8TBY8 1022 aa30.65■■■□□ 2.5
VSX1-201ENST00000376707 MARF1Q9Y4F3 1742 aaKnown RBP30.64■■■□□ 2.5
VSX1-201ENST00000376707 SBNO1A3KN83 1393 aa30.64■■■□□ 2.5
VSX1-201ENST00000376707 EIF3AQ14152 1382 aaKnown RBP30.64■■■□□ 2.5
VSX1-201ENST00000376707 LMOD2Q6P5Q4 547 aa30.63■■■□□ 2.49
VSX1-201ENST00000376707 USP32Q8NFA0 1604 aa30.62■■■□□ 2.49
VSX1-201ENST00000376707 ARHGEF10O15013 1369 aa30.6■■■□□ 2.49
VSX1-201ENST00000376707 PLEKHG5O94827 1062 aa30.6■■■□□ 2.49
VSX1-201ENST00000376707 WASLO00401 505 aaPredicted RBP30.59■■■□□ 2.49
VSX1-201ENST00000376707 ATAD2Q6PL18 1390 aa30.58■■■□□ 2.49
VSX1-201ENST00000376707 CABLES1Q8TDN4 633 aa30.58■■■□□ 2.49
VSX1-201ENST00000376707 TULP4Q9NRJ4 1543 aa30.57■■■□□ 2.49
VSX1-201ENST00000376707 UNC5CLQ8IV45 518 aa30.57■■■□□ 2.48
VSX1-201ENST00000376707 GJD4Q96KN9 370 aaPredicted RBP30.57■■■□□ 2.48
VSX1-201ENST00000376707 PRR36Q9H6K5 1346 aa30.56■■■□□ 2.48
VSX1-201ENST00000376707 SLIT2O94813 1529 aa30.56■■■□□ 2.48
VSX1-201ENST00000376707 GPRASP1Q5JY77 1395 aa30.55■■■□□ 2.48
VSX1-201ENST00000376707 ARHGEF28Q8N1W1 1705 aaKnown RBP30.52■■■□□ 2.48
VSX1-201ENST00000376707 TNKS1BP1Q9C0C2 1729 aaKnown RBP30.52■■■□□ 2.48
VSX1-201ENST00000376707 NGDNQ8NEJ9 315 aaKnown RBP30.5■■■□□ 2.47
VSX1-201ENST00000376707 RALGAPBQ86X10 1494 aa30.48■■■□□ 2.47
VSX1-201ENST00000376707 NUDT16Q96DE0 195 aaKnown RBP30.46■■■□□ 2.47
VSX1-201ENST00000376707 TRPM3Q9HCF6 1732 aaPredicted RBP30.46■■■□□ 2.47
VSX1-201ENST00000376707 ABCA3Q99758 1704 aa30.45■■■□□ 2.47
VSX1-201ENST00000376707 KIAA1210Q9ULL0 1709 aa30.44■■■□□ 2.46
VSX1-201ENST00000376707 GLI3P10071 1580 aa30.44■■■□□ 2.46
VSX1-201ENST00000376707 ATP7BP35670 1465 aa30.44■■■□□ 2.46
VSX1-201ENST00000376707 PAK3O75914 559 aaPredicted RBP30.43■■■□□ 2.46
VSX1-201ENST00000376707 VPS72Q15906 364 aa30.43■■■□□ 2.46
VSX1-201ENST00000376707 CDK19Q9BWU1 502 aa30.43■■■□□ 2.46
VSX1-201ENST00000376707 NBPF1Q3BBV0 1214 aa30.42■■■□□ 2.46
VSX1-201ENST00000376707 CCDC9Q9Y3X0 531 aaKnown RBP30.42■■■□□ 2.46
VSX1-201ENST00000376707 FAM83GA6ND36 823 aa30.41■■■□□ 2.46
VSX1-201ENST00000376707 PLCH1Q4KWH8 1693 aa30.41■■■□□ 2.46
VSX1-201ENST00000376707 ALS2Q96Q42 1657 aa30.41■■■□□ 2.46
VSX1-201ENST00000376707 ITSN1Q15811 1721 aa30.39■■■□□ 2.46
VSX1-201ENST00000376707 NWD2Q9ULI1 1742 aa30.39■■■□□ 2.46
VSX1-201ENST00000376707 CCDC125Q86Z20 511 aa30.35■■■□□ 2.45
VSX1-201ENST00000376707 SEPT12Q8IYM1 358 aa30.35■■■□□ 2.45
VSX1-201ENST00000376707 BTG4Q9NY30 223 aa30.34■■■□□ 2.45
VSX1-201ENST00000376707 CCDC61Q9Y6R9 512 aa30.34■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms