RNA–Protein interactions for RNA: ENST00000375274.6

PTCH1-203, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 4,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-203ENST00000375274 RNF214Q8ND24 703 aa14.04□□□□□ -0.16
PTCH1-203ENST00000375274 ERBINQ96RT1 1412 aa14.04□□□□□ -0.16
PTCH1-203ENST00000375274 SCAPERQ9BY12 1400 aa14.03□□□□□ -0.16
PTCH1-203ENST00000375274 PRKAR2BP31323 418 aa14.03□□□□□ -0.16
PTCH1-203ENST00000375274 TNNT3P45378 269 aaPredicted RBP14.03□□□□□ -0.16
PTCH1-203ENST00000375274 SLFN5Q08AF3 891 aa14.03□□□□□ -0.16
PTCH1-203ENST00000375274 GCC1Q96CN9 775 aa14.03□□□□□ -0.16
PTCH1-203ENST00000375274 CCDC9Q9Y3X0 531 aaKnown RBP14.03□□□□□ -0.16
PTCH1-203ENST00000375274 NEXNQ0ZGT2 675 aa14.03□□□□□ -0.16
PTCH1-203ENST00000375274 BICD2Q8TD16 824 aa14.03□□□□□ -0.16
PTCH1-203ENST00000375274 TOMM22Q9NS69 142 aa14.03□□□□□ -0.16
PTCH1-203ENST00000375274 RABEP1Q15276 862 aa14.02□□□□□ -0.16
PTCH1-203ENST00000375274 C1orf141Q5JVX7 400 aa14.02□□□□□ -0.16
PTCH1-203ENST00000375274 ATF7IPQ6VMQ6 1270 aa14.02□□□□□ -0.16
PTCH1-203ENST00000375274 ISY1Q9ULR0 285 aaKnown RBP14.02□□□□□ -0.16
PTCH1-203ENST00000375274 POLA1P09884 1462 aaPredicted RBP14.02□□□□□ -0.16
PTCH1-203ENST00000375274 MVPQ14764 893 aaKnown RBP14.02□□□□□ -0.16
PTCH1-203ENST00000375274 RNF20Q5VTR2 975 aa14.02□□□□□ -0.16
PTCH1-203ENST00000375274 NOB1Q9ULX3 412 aaKnown RBP14.02□□□□□ -0.16
PTCH1-203ENST00000375274 CT47B1P0C2W7 299 aaPredicted RBP14.02□□□□□ -0.17
PTCH1-203ENST00000375274 R3HCC1Q9Y3T6 440 aaKnown RBP14.02□□□□□ -0.17
PTCH1-203ENST00000375274 NEK4P51957 841 aa14.02□□□□□ -0.17
PTCH1-203ENST00000375274 MBD3O95983 291 aa14.01□□□□□ -0.17
PTCH1-203ENST00000375274 ZNF592Q92610 1267 aa14.01□□□□□ -0.17
PTCH1-203ENST00000375274 MCM4P33991 863 aa14.01□□□□□ -0.17
PTCH1-203ENST00000375274 HSP90AB4PQ58FF6 505 aa14.01□□□□□ -0.17
PTCH1-203ENST00000375274 C1orf115Q9H7X2 142 aa14.01□□□□□ -0.17
PTCH1-203ENST00000375274 SKAP1Q86WV1 359 aa14□□□□□ -0.17
PTCH1-203ENST00000375274 NCOA1Q15788 1441 aa14□□□□□ -0.17
PTCH1-203ENST00000375274 MAP3K1Q13233 1512 aa14□□□□□ -0.17
PTCH1-203ENST00000375274 TWISTNBQ3B726 338 aaPredicted RBP14□□□□□ -0.17
PTCH1-203ENST00000375274 C20orf194Q5TEA3 1177 aa14□□□□□ -0.17
PTCH1-203ENST00000375274 SUPT6HQ7KZ85 1726 aaKnown RBP14□□□□□ -0.17
PTCH1-203ENST00000375274 ARHGAP5Q13017 1502 aa14□□□□□ -0.17
PTCH1-203ENST00000375274 CREBRFQ8IUR6 639 aa14□□□□□ -0.17
PTCH1-203ENST00000375274 TOPBP1Q92547 1522 aa14□□□□□ -0.17
PTCH1-203ENST00000375274 SYNJ2O15056 1496 aa14□□□□□ -0.17
PTCH1-203ENST00000375274 RASSF8Q8NHQ8 419 aa13.99□□□□□ -0.17
PTCH1-203ENST00000375274 PRPF40AO75400 957 aaKnown RBP13.99□□□□□ -0.17
PTCH1-203ENST00000375274 TPM3P06753 285 aa13.99□□□□□ -0.17
PTCH1-203ENST00000375274 G3BP1Q13283 466 aaKnown RBP eCLIP13.99□□□□□ -0.17
PTCH1-203ENST00000375274 CPLX2Q6PUV4 134 aaKnown RBP13.99□□□□□ -0.17
PTCH1-203ENST00000375274 WWC1Q8IX03 1113 aa13.99□□□□□ -0.17
PTCH1-203ENST00000375274 GOLGA6L1Q8N7Z2 621 aa13.99□□□□□ -0.17
PTCH1-203ENST00000375274 ERC2O15083 957 aa13.99□□□□□ -0.17
PTCH1-203ENST00000375274 CCDC39Q9UFE4 941 aa13.99□□□□□ -0.17
PTCH1-203ENST00000375274 LAMC3Q9Y6N6 1575 aa13.98□□□□□ -0.17
PTCH1-203ENST00000375274 MCM2P49736 904 aa13.98□□□□□ -0.17
PTCH1-203ENST00000375274 GNAI3P08754 354 aa13.98□□□□□ -0.17
PTCH1-203ENST00000375274 UBTFL1P0CB47 393 aaPredicted RBP13.98□□□□□ -0.17
PTCH1-203ENST00000375274 GRPEL1Q9HAV7 217 aa13.98□□□□□ -0.17
PTCH1-203ENST00000375274 CCDC173Q0VFZ6 552 aa13.97□□□□□ -0.17
PTCH1-203ENST00000375274 DDX58O95786 925 aaKnown RBP13.97□□□□□ -0.17
PTCH1-203ENST00000375274 SASS6Q6UVJ0 657 aa13.97□□□□□ -0.17
PTCH1-203ENST00000375274 EPRSP07814 1512 aaKnown RBP13.97□□□□□ -0.17
PTCH1-203ENST00000375274 HECW1Q76N89 1606 aa13.97□□□□□ -0.17
PTCH1-203ENST00000375274 PCF11O94913 1555 aaKnown RBP13.97□□□□□ -0.17
PTCH1-203ENST00000375274 K7ELQ4 463 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-203ENST00000375274 LRRFIP1Q32MZ4 808 aaKnown RBP13.96□□□□□ -0.17
PTCH1-203ENST00000375274 CCAR2Q8N163 923 aaKnown RBP13.96□□□□□ -0.17
PTCH1-203ENST00000375274 MAP7D2Q96T17 732 aa13.96□□□□□ -0.17
PTCH1-203ENST00000375274 CIZ1Q9ULV3 898 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-203ENST00000375274 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.96□□□□□ -0.17
PTCH1-203ENST00000375274 NESP48681 1621 aa13.96□□□□□ -0.17
PTCH1-203ENST00000375274 CPLX1O14810 134 aa13.96□□□□□ -0.18
PTCH1-203ENST00000375274 CHD1LQ86WJ1 897 aa13.95□□□□□ -0.18
PTCH1-203ENST00000375274 IFT57Q9NWB7 429 aa13.95□□□□□ -0.18
PTCH1-203ENST00000375274 SURF6O75683 361 aaKnown RBP13.95□□□□□ -0.18
PTCH1-203ENST00000375274 TPM2P07951 284 aa13.95□□□□□ -0.18
PTCH1-203ENST00000375274 CDK13Q14004 1512 aaKnown RBP13.94□□□□□ -0.18
PTCH1-203ENST00000375274 MTERF4Q7Z6M4 381 aaKnown RBP13.94□□□□□ -0.18
PTCH1-203ENST00000375274 ZNF771Q7L3S4 317 aaPredicted RBP13.94□□□□□ -0.18
PTCH1-203ENST00000375274 CWC22Q9HCG8 908 aaKnown RBP13.94□□□□□ -0.18
PTCH1-203ENST00000375274 ESPNB1AK53 854 aa13.94□□□□□ -0.18
PTCH1-203ENST00000375274 CCDC73Q6ZRK6 1079 aa13.94□□□□□ -0.18
PTCH1-203ENST00000375274 CLASRPQ8N2M8 674 aaKnown RBP13.94□□□□□ -0.18
PTCH1-203ENST00000375274 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-203ENST00000375274 PRAM1Q96QH2 718 aa13.93□□□□□ -0.18
PTCH1-203ENST00000375274 HOMER1Q86YM7 354 aa13.93□□□□□ -0.18
PTCH1-203ENST00000375274 TTC5Q8N0Z6 440 aa13.93□□□□□ -0.18
PTCH1-203ENST00000375274 TPD52L1Q16890 204 aaPredicted RBP13.93□□□□□ -0.18
PTCH1-203ENST00000375274 PES1O00541 588 aaKnown RBP13.93□□□□□ -0.18
PTCH1-203ENST00000375274 CNTROBQ8N137 903 aa13.92□□□□□ -0.18
PTCH1-203ENST00000375274 NOC3LQ8WTT2 800 aaKnown RBP13.92□□□□□ -0.18
PTCH1-203ENST00000375274 RPRD2Q5VT52 1461 aaKnown RBP13.92□□□□□ -0.18
PTCH1-203ENST00000375274 SYNE3Q6ZMZ3 975 aa13.92□□□□□ -0.18
PTCH1-203ENST00000375274 AKAP17AQ02040 695 aaKnown RBP13.91□□□□□ -0.18
PTCH1-203ENST00000375274 ZNF428Q96B54 188 aa13.91□□□□□ -0.18
PTCH1-203ENST00000375274 TSPY26PQ9H489 355 aa13.91□□□□□ -0.18
PTCH1-203ENST00000375274 ABCC5O15440 1437 aa13.91□□□□□ -0.18
PTCH1-203ENST00000375274 RARSP54136 660 aaKnown RBP13.91□□□□□ -0.18
PTCH1-203ENST00000375274 CCDC27Q2M243 656 aa13.91□□□□□ -0.18
PTCH1-203ENST00000375274 CCDC30Q5VVM6 783 aa13.91□□□□□ -0.18
PTCH1-203ENST00000375274 GNAI2P04899 355 aa13.91□□□□□ -0.18
PTCH1-203ENST00000375274 TPM1P09493 284 aa13.91□□□□□ -0.18
PTCH1-203ENST00000375274 DUSP27Q5VZP5 1158 aa13.91□□□□□ -0.18
PTCH1-203ENST00000375274 TRIM29Q14134 588 aa13.9□□□□□ -0.18
PTCH1-203ENST00000375274 TSR1Q2NL82 804 aaKnown RBP13.9□□□□□ -0.18
PTCH1-203ENST00000375274 PLEKHH2Q8IVE3 1493 aa13.9□□□□□ -0.18
PTCH1-203ENST00000375274 FIBPO43427 364 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 149.2 ms