RNA–Protein interactions for RNA: ENST00000375224.1

UBR4-202, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 3,475 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-202ENST00000375224 NINLQ9Y2I6 1382 aa10.86□□□□□ -0.67
UBR4-202ENST00000375224 CARD14Q9BXL6 1004 aa10.86□□□□□ -0.67
UBR4-202ENST00000375224 USP32Q8NFA0 1604 aa10.86□□□□□ -0.67
UBR4-202ENST00000375224 ADAMTS8Q9UP79 889 aa10.86□□□□□ -0.67
UBR4-202ENST00000375224 NGEFQ8N5V2 710 aa10.85□□□□□ -0.67
UBR4-202ENST00000375224 NSD3Q9BZ95 1437 aa10.84□□□□□ -0.67
UBR4-202ENST00000375224 NSD2O96028 1365 aa10.84□□□□□ -0.67
UBR4-202ENST00000375224 CGNL1Q0VF96 1302 aa10.84□□□□□ -0.67
UBR4-202ENST00000375224 RTN4Q9NQC3 1192 aaKnown RBP10.83□□□□□ -0.67
UBR4-202ENST00000375224 YTHDC2Q9H6S0 1430 aaKnown RBP10.83□□□□□ -0.68
UBR4-202ENST00000375224 ANKRD36BQ8N2N9 1353 aa10.83□□□□□ -0.68
UBR4-202ENST00000375224 MORC1Q86VD1 984 aa10.83□□□□□ -0.68
UBR4-202ENST00000375224 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.83□□□□□ -0.68
UBR4-202ENST00000375224 SLC12A5Q9H2X9 1139 aa10.83□□□□□ -0.68
UBR4-202ENST00000375224 RCAN3Q9UKA8 241 aa10.83□□□□□ -0.68
UBR4-202ENST00000375224 TULP4Q9NRJ4 1543 aa10.83□□□□□ -0.68
UBR4-202ENST00000375224 HDGFP51858 240 aaKnown RBP10.83□□□□□ -0.68
UBR4-202ENST00000375224 ALKQ9UM73 1620 aa10.83□□□□□ -0.68
UBR4-202ENST00000375224 POLR3AO14802 1390 aaPredicted RBP10.83□□□□□ -0.68
UBR4-202ENST00000375224 A2ML1A8K2U0 1454 aa10.82□□□□□ -0.68
UBR4-202ENST00000375224 MLECQ14165 292 aa10.82□□□□□ -0.68
UBR4-202ENST00000375224 POGKQ9P215 609 aa10.82□□□□□ -0.68
UBR4-202ENST00000375224 ATAD2Q6PL18 1390 aa10.82□□□□□ -0.68
UBR4-202ENST00000375224 RIMS2Q9UQ26 1411 aa10.81□□□□□ -0.68
UBR4-202ENST00000375224 STK26Q9P289 416 aa10.81□□□□□ -0.68
UBR4-202ENST00000375224 PTPRMP28827 1452 aa10.81□□□□□ -0.68
UBR4-202ENST00000375224 SENP3-EIF4A1A0A087X0R7 540 aa10.81□□□□□ -0.68
UBR4-202ENST00000375224 ZMYM3Q14202 1370 aa10.81□□□□□ -0.68
UBR4-202ENST00000375224 RRP1P56182 461 aaKnown RBP10.81□□□□□ -0.68
UBR4-202ENST00000375224 DLC1Q96QB1 1528 aa10.8□□□□□ -0.68
UBR4-202ENST00000375224 SRPK2P78362 688 aaKnown RBP10.79□□□□□ -0.68
UBR4-202ENST00000375224 CFAP53Q96M91 514 aa10.79□□□□□ -0.68
UBR4-202ENST00000375224 TERF2IPQ9NYB0 399 aa10.79□□□□□ -0.68
UBR4-202ENST00000375224 PRAM1Q96QH2 718 aa10.79□□□□□ -0.68
UBR4-202ENST00000375224 CABP2Q9NPB3 220 aa10.79□□□□□ -0.68
UBR4-202ENST00000375224 GOLGA2Q08379 1002 aa10.78□□□□□ -0.68
UBR4-202ENST00000375224 B4GALNT3Q6L9W6 998 aa10.78□□□□□ -0.68
UBR4-202ENST00000375224 CDCA7LQ96GN5 454 aa10.78□□□□□ -0.68
UBR4-202ENST00000375224 SAFB2Q14151 953 aaKnown RBP eCLIP10.77□□□□□ -0.68
UBR4-202ENST00000375224 RTL5Q5HYW3 569 aaPredicted RBP10.77□□□□□ -0.68
UBR4-202ENST00000375224 ZNF521Q96K83 1311 aa10.77□□□□□ -0.69
UBR4-202ENST00000375224 TNRQ92752 1358 aa10.77□□□□□ -0.69
UBR4-202ENST00000375224 MSH5O43196 834 aa10.77□□□□□ -0.69
UBR4-202ENST00000375224 ABCC11Q96J66 1382 aa10.76□□□□□ -0.69
UBR4-202ENST00000375224 MINK1Q8N4C8 1332 aaPredicted RBP10.76□□□□□ -0.69
UBR4-202ENST00000375224 PLEKHH1Q9ULM0 1364 aa10.76□□□□□ -0.69
UBR4-202ENST00000375224 HDGFL2Q7Z4V5 671 aaPredicted RBP10.76□□□□□ -0.69
UBR4-202ENST00000375224 SETD1AO15047 1707 aaKnown RBP10.75□□□□□ -0.69
UBR4-202ENST00000375224 MED14O60244 1454 aa10.75□□□□□ -0.69
UBR4-202ENST00000375224 SIRT1Q96EB6 747 aa10.75□□□□□ -0.69
UBR4-202ENST00000375224 A0A1W2PP64 1363 aa10.74□□□□□ -0.69
UBR4-202ENST00000375224 CDK19Q9BWU1 502 aa10.74□□□□□ -0.69
UBR4-202ENST00000375224 APAF1O14727 1248 aa10.74□□□□□ -0.69
UBR4-202ENST00000375224 SLFN5Q08AF3 891 aa10.74□□□□□ -0.69
UBR4-202ENST00000375224 NCBP3Q53F19 620 aaKnown RBP10.74□□□□□ -0.69
UBR4-202ENST00000375224 DUSP27Q5VZP5 1158 aa10.74□□□□□ -0.69
UBR4-202ENST00000375224 CCDC146Q8IYE0 955 aa10.74□□□□□ -0.69
UBR4-202ENST00000375224 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.74□□□□□ -0.69
UBR4-202ENST00000375224 E9PSI1 815 aa10.73□□□□□ -0.69
UBR4-202ENST00000375224 MTHFSP49914 203 aa10.73□□□□□ -0.69
UBR4-202ENST00000375224 SHPRHQ149N8 1683 aa10.73□□□□□ -0.69
UBR4-202ENST00000375224 RUNDC1Q96C34 613 aa10.73□□□□□ -0.69
UBR4-202ENST00000375224 ANKRD26Q9UPS8 1709 aa10.73□□□□□ -0.69
UBR4-202ENST00000375224 TNNT2P45379 298 aaPredicted RBP10.72□□□□□ -0.69
UBR4-202ENST00000375224 NBR1Q14596 966 aa10.72□□□□□ -0.69
UBR4-202ENST00000375224 TRMT2AQ8IZ69 625 aaKnown RBP10.72□□□□□ -0.69
UBR4-202ENST00000375224 SENP3Q9H4L4 574 aaPredicted RBP10.72□□□□□ -0.69
UBR4-202ENST00000375224 KNDC1Q76NI1 1749 aa10.72□□□□□ -0.69
UBR4-202ENST00000375224 NLRP1Q9C000 1473 aa10.72□□□□□ -0.69
UBR4-202ENST00000375224 NRXN3Q9Y4C0 1643 aa10.72□□□□□ -0.69
UBR4-202ENST00000375224 FAM135BQ49AJ0 1406 aa10.72□□□□□ -0.69
UBR4-202ENST00000375224 IL27Q8NEV9 243 aa10.71□□□□□ -0.69
UBR4-202ENST00000375224 TMEM2Q9UHN6 1383 aa10.71□□□□□ -0.69
UBR4-202ENST00000375224 UBR1Q8IWV7 1749 aa10.71□□□□□ -0.69
UBR4-202ENST00000375224 FANCIQ9NVI1 1328 aa10.71□□□□□ -0.69
UBR4-202ENST00000375224 ATP7BP35670 1465 aa10.71□□□□□ -0.69
UBR4-202ENST00000375224 TECPR2O15040 1411 aa10.7□□□□□ -0.7
UBR4-202ENST00000375224 NKTRP30414 1462 aaKnown RBP10.7□□□□□ -0.7
UBR4-202ENST00000375224 CD163L1Q9NR16 1453 aa10.7□□□□□ -0.7
UBR4-202ENST00000375224 EXOC6Q8TAG9 804 aa10.7□□□□□ -0.7
UBR4-202ENST00000375224 CABP1Q9NZU7 370 aa10.69□□□□□ -0.7
UBR4-202ENST00000375224 FYB1O15117 783 aa10.69□□□□□ -0.7
UBR4-202ENST00000375224 WAPLQ7Z5K2 1190 aa10.69□□□□□ -0.7
UBR4-202ENST00000375224 KIF20BQ96Q89 1820 aa10.69□□□□□ -0.7
UBR4-202ENST00000375224 WASLO00401 505 aaPredicted RBP10.68□□□□□ -0.7
UBR4-202ENST00000375224 CCDC27Q2M243 656 aa10.68□□□□□ -0.7
UBR4-202ENST00000375224 CPS1P31327 1500 aa10.68□□□□□ -0.7
UBR4-202ENST00000375224 PNNQ9H307 717 aaKnown RBP10.68□□□□□ -0.7
UBR4-202ENST00000375224 METP08581 1390 aa10.68□□□□□ -0.7
UBR4-202ENST00000375224 WDR63Q8IWG1 891 aa10.68□□□□□ -0.7
UBR4-202ENST00000375224 WWC1Q8IX03 1113 aa10.68□□□□□ -0.7
UBR4-202ENST00000375224 GGNBP2Q9H3C7 697 aa10.68□□□□□ -0.7
UBR4-202ENST00000375224 VSIG10Q8N0Z9 540 aa10.67□□□□□ -0.7
UBR4-202ENST00000375224 PLEKHG1Q9ULL1 1385 aa10.67□□□□□ -0.7
UBR4-202ENST00000375224 TCP11L2Q8N4U5 519 aa10.67□□□□□ -0.7
UBR4-202ENST00000375224 EID1Q9Y6B2 187 aa10.67□□□□□ -0.7
UBR4-202ENST00000375224 U2AF1L5P0DN76 240 aaPredicted RBP10.67□□□□□ -0.7
UBR4-202ENST00000375224 U2AF1Q01081 240 aaKnown RBP eCLIP10.67□□□□□ -0.76e-10■■■□□ 14.7
UBR4-202ENST00000375224 IQSEC2Q5JU85 1478 aa10.67□□□□□ -0.7
UBR4-202ENST00000375224 PDE4CQ08493 712 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms