RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SAFB2Q14151 953 aaKnown RBP eCLIP21.28■■□□□ 1
CCDC40-202ENST00000374876 PLEKHH1Q9ULM0 1364 aa21.28■■□□□ 1
CCDC40-202ENST00000374876 IQSEC2Q5JU85 1478 aa21.28■■□□□ 1
CCDC40-202ENST00000374876 RALGAPBQ86X10 1494 aa21.28■■□□□ 1
CCDC40-202ENST00000374876 PTCH1Q13635 1447 aa21.27■■□□□ 1
CCDC40-202ENST00000374876 HNRNPUQ00839 825 aaKnown RBP eCLIP21.27■■□□□ 1
CCDC40-202ENST00000374876 KIAA1210Q9ULL0 1709 aa21.27■■□□□ 1
CCDC40-202ENST00000374876 TECPR2O15040 1411 aa21.27■□□□□ 0.99
CCDC40-202ENST00000374876 PRAM1Q96QH2 718 aa21.26■□□□□ 0.99
CCDC40-202ENST00000374876 NEFLP07196 543 aa21.26■□□□□ 0.99
CCDC40-202ENST00000374876 C19orf44Q9H6X5 657 aa21.26■□□□□ 0.99
CCDC40-202ENST00000374876 TRPM1Q7Z4N2 1603 aa21.25■□□□□ 0.99
CCDC40-202ENST00000374876 ROCK2O75116 1388 aaKnown RBP21.25■□□□□ 0.99
CCDC40-202ENST00000374876 MSH6P52701 1360 aa21.25■□□□□ 0.99
CCDC40-202ENST00000374876 FKBP8Q14318 412 aa21.25■□□□□ 0.99
CCDC40-202ENST00000374876 POGKQ9P215 609 aa21.24■□□□□ 0.99
CCDC40-202ENST00000374876 NCOA3Q9Y6Q9 1424 aa21.24■□□□□ 0.99
CCDC40-202ENST00000374876 TOM1O60784 492 aa21.23■□□□□ 0.99
CCDC40-202ENST00000374876 SIRT1Q96EB6 747 aa21.23■□□□□ 0.99
CCDC40-202ENST00000374876 CARD11Q9BXL7 1154 aa21.23■□□□□ 0.99
CCDC40-202ENST00000374876 KNDC1Q76NI1 1749 aa21.23■□□□□ 0.99
CCDC40-202ENST00000374876 PIP4K2BP78356 416 aa21.22■□□□□ 0.99
CCDC40-202ENST00000374876 FBXO41Q8TF61 875 aa21.22■□□□□ 0.99
CCDC40-202ENST00000374876 ATF3P18847 181 aa21.21■□□□□ 0.99
CCDC40-202ENST00000374876 FAM135BQ49AJ0 1406 aa21.2■□□□□ 0.99
CCDC40-202ENST00000374876 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.2■□□□□ 0.98
CCDC40-202ENST00000374876 CCDC184Q52MB2 194 aa21.19■□□□□ 0.98
CCDC40-202ENST00000374876 POLR3GLQ9BT43 218 aa21.19■□□□□ 0.98
CCDC40-202ENST00000374876 MRS2Q9HD23 443 aa21.19■□□□□ 0.98
CCDC40-202ENST00000374876 ADGRL3Q9HAR2 1447 aa21.19■□□□□ 0.98
CCDC40-202ENST00000374876 NALCNQ8IZF0 1738 aa21.18■□□□□ 0.98
CCDC40-202ENST00000374876 DLC1Q96QB1 1528 aa21.18■□□□□ 0.98
CCDC40-202ENST00000374876 CADPS2Q86UW7 1296 aa21.17■□□□□ 0.98
CCDC40-202ENST00000374876 SLAIN2Q9P270 581 aa21.17■□□□□ 0.98
CCDC40-202ENST00000374876 MINK1Q8N4C8 1332 aaPredicted RBP21.17■□□□□ 0.98
CCDC40-202ENST00000374876 ARHGEF28Q8N1W1 1705 aaKnown RBP21.16■□□□□ 0.98
CCDC40-202ENST00000374876 GPRASP1Q5JY77 1395 aa21.15■□□□□ 0.98
CCDC40-202ENST00000374876 NUTM2FA1L443 756 aa21.15■□□□□ 0.98
CCDC40-202ENST00000374876 FAM9BQ8IZU0 186 aa21.14■□□□□ 0.98
CCDC40-202ENST00000374876 ILDR1Q86SU0 546 aaPredicted RBP21.14■□□□□ 0.97
CCDC40-202ENST00000374876 CENPJQ9HC77 1338 aaPredicted RBP21.11■□□□□ 0.97
CCDC40-202ENST00000374876 ST20-MTHFSA0A0A6YYL1 179 aa21.11■□□□□ 0.97
CCDC40-202ENST00000374876 DCCP43146 1447 aa21.11■□□□□ 0.97
CCDC40-202ENST00000374876 MST1RQ04912 1400 aa21.09■□□□□ 0.97
CCDC40-202ENST00000374876 ORAI2Q96SN7 254 aa21.07■□□□□ 0.96
CCDC40-202ENST00000374876 WASLO00401 505 aaPredicted RBP21.06■□□□□ 0.96
CCDC40-202ENST00000374876 CDC42BPGQ6DT37 1551 aa21.06■□□□□ 0.96
CCDC40-202ENST00000374876 EIF3AQ14152 1382 aaKnown RBP21.05■□□□□ 0.96
CCDC40-202ENST00000374876 C1orf167Q5SNV9 1468 aa21.05■□□□□ 0.96
CCDC40-202ENST00000374876 CNGB1Q14028 1251 aaPredicted RBP21.05■□□□□ 0.96
CCDC40-202ENST00000374876 BRINP3Q76B58 766 aa21.05■□□□□ 0.96
CCDC40-202ENST00000374876 ESCO1Q5FWF5 840 aa21.04■□□□□ 0.96
CCDC40-202ENST00000374876 CDK19Q9BWU1 502 aa21.04■□□□□ 0.96
CCDC40-202ENST00000374876 ZBED9Q6R2W3 1325 aa21.04■□□□□ 0.96
CCDC40-202ENST00000374876 ROBO1Q9Y6N7 1651 aa21.04■□□□□ 0.96
CCDC40-202ENST00000374876 QRICH2Q9H0J4 1663 aa21.03■□□□□ 0.96
CCDC40-202ENST00000374876 HSPA1LP34931 641 aa21.02■□□□□ 0.96
CCDC40-202ENST00000374876 DDX17Q92841 729 aaKnown RBP21.02■□□□□ 0.96
CCDC40-202ENST00000374876 ADGRB2O60241 1585 aa21.01■□□□□ 0.95
CCDC40-202ENST00000374876 FMN2Q9NZ56 1722 aa21.01■□□□□ 0.95
CCDC40-202ENST00000374876 CABP2Q9NPB3 220 aa21■□□□□ 0.95
CCDC40-202ENST00000374876 RGPD8O14715 1765 aaPredicted RBP20.99■□□□□ 0.95
CCDC40-202ENST00000374876 PRR36Q9H6K5 1346 aa20.99■□□□□ 0.95
CCDC40-202ENST00000374876 SRPK2P78362 688 aaKnown RBP20.99■□□□□ 0.95
CCDC40-202ENST00000374876 NUDT16Q96DE0 195 aaKnown RBP20.98■□□□□ 0.95
CCDC40-202ENST00000374876 TSHZ2Q9NRE2 1034 aa20.98■□□□□ 0.95
CCDC40-202ENST00000374876 PMFBP1Q8TBY8 1022 aa20.97■□□□□ 0.95
CCDC40-202ENST00000374876 TESK2Q96S53 571 aa20.97■□□□□ 0.95
CCDC40-202ENST00000374876 EVC2Q86UK5 1308 aa20.96■□□□□ 0.95
CCDC40-202ENST00000374876 USP32Q8NFA0 1604 aa20.96■□□□□ 0.95
CCDC40-202ENST00000374876 FOXO3O43524 673 aa20.95■□□□□ 0.94
CCDC40-202ENST00000374876 KTN1Q86UP2 1357 aaKnown RBP20.95■□□□□ 0.94
CCDC40-202ENST00000374876 TULP4Q9NRJ4 1543 aa20.95■□□□□ 0.94
CCDC40-202ENST00000374876 PHF8Q9UPP1 1060 aa20.94■□□□□ 0.94
CCDC40-202ENST00000374876 TMC1Q8TDI8 760 aa20.94■□□□□ 0.94
CCDC40-202ENST00000374876 XPCQ01831 940 aaPredicted RBP20.93■□□□□ 0.94
CCDC40-202ENST00000374876 ANKARQ7Z5J8 1434 aa20.92■□□□□ 0.94
CCDC40-202ENST00000374876 RALBP1Q15311 655 aa20.92■□□□□ 0.94
CCDC40-202ENST00000374876 SBNO2Q9Y2G9 1366 aa20.92■□□□□ 0.94
CCDC40-202ENST00000374876 ATP7BP35670 1465 aa20.91■□□□□ 0.94
CCDC40-202ENST00000374876 CCDC61Q9Y6R9 512 aa20.91■□□□□ 0.94
CCDC40-202ENST00000374876 IRX6P78412 446 aaPredicted RBP20.9■□□□□ 0.94
CCDC40-202ENST00000374876 MYBBP1AQ9BQG0 1328 aaKnown RBP20.9■□□□□ 0.94
CCDC40-202ENST00000374876 PHLPP1O60346 1717 aa20.9■□□□□ 0.94
CCDC40-202ENST00000374876 PNISRQ8TF01 805 aaKnown RBP20.89■□□□□ 0.93
CCDC40-202ENST00000374876 ERICH6BQ5W0A0 696 aa20.88■□□□□ 0.93
CCDC40-202ENST00000374876 CABP1Q9NZU7 370 aa20.88■□□□□ 0.93
CCDC40-202ENST00000374876 BRD4O60885 1362 aaPredicted RBP20.87■□□□□ 0.93
CCDC40-202ENST00000374876 NGDNQ8NEJ9 315 aaKnown RBP20.87■□□□□ 0.93
CCDC40-202ENST00000374876 AHDC1Q5TGY3 1603 aaPredicted RBP20.87■□□□□ 0.93
CCDC40-202ENST00000374876 DISP3Q9P2K9 1392 aa20.87■□□□□ 0.93
CCDC40-202ENST00000374876 NPHP3Q7Z494 1330 aa20.87■□□□□ 0.93
CCDC40-202ENST00000374876 PSME1Q06323 249 aa20.87■□□□□ 0.93
CCDC40-202ENST00000374876 NHSL1Q5SYE7 1610 aa20.86■□□□□ 0.93
CCDC40-202ENST00000374876 TMF1P82094 1093 aa20.86■□□□□ 0.93
CCDC40-202ENST00000374876 KRT28Q7Z3Y7 464 aa20.85■□□□□ 0.93
CCDC40-202ENST00000374876 PPIP5K1Q6PFW1 1433 aa20.85■□□□□ 0.93
CCDC40-202ENST00000374876 SOS2Q07890 1332 aaPredicted RBP20.85■□□□□ 0.93
CCDC40-202ENST00000374876 ACEP12821 1306 aa20.84■□□□□ 0.93
CCDC40-202ENST00000374876 PLEKHG3A1L390 1219 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms