RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 SPATA31E1Q6ZUB1 1445 aa20.69■□□□□ 0.9
CXCL12-202ENST00000374426 CDC42BPGQ6DT37 1551 aa20.68■□□□□ 0.9
CXCL12-202ENST00000374426 RGL3Q3MIN7 710 aa20.67■□□□□ 0.9
CXCL12-202ENST00000374426 SRCAPQ6ZRS2 3230 aa20.66■□□□□ 0.9
CXCL12-202ENST00000374426 ESCO1Q5FWF5 840 aa20.66■□□□□ 0.9
CXCL12-202ENST00000374426 TECPR2O15040 1411 aa20.66■□□□□ 0.9
CXCL12-202ENST00000374426 NPHP3Q7Z494 1330 aa20.65■□□□□ 0.9
CXCL12-202ENST00000374426 MPHOSPH9Q99550 1183 aa20.65■□□□□ 0.9
CXCL12-202ENST00000374426 COL22A1Q8NFW1 1626 aaPredicted RBP20.64■□□□□ 0.9
CXCL12-202ENST00000374426 PXDNQ92626 1479 aa20.64■□□□□ 0.89
CXCL12-202ENST00000374426 LRPPRCP42704 1394 aaKnown RBP20.64■□□□□ 0.89
CXCL12-202ENST00000374426 ANKRD30BQ9BXX2 1392 aa20.64■□□□□ 0.89
CXCL12-202ENST00000374426 WAPLQ7Z5K2 1190 aa20.64■□□□□ 0.89
CXCL12-202ENST00000374426 FNBP4Q8N3X1 1017 aaPredicted RBP20.64■□□□□ 0.89
CXCL12-202ENST00000374426 STK26Q9P289 416 aa20.64■□□□□ 0.89
CXCL12-202ENST00000374426 USP21Q9UK80 565 aa20.64■□□□□ 0.89
CXCL12-202ENST00000374426 MYOM2P54296 1465 aa20.63■□□□□ 0.89
CXCL12-202ENST00000374426 ABCC11Q96J66 1382 aa20.62■□□□□ 0.89
CXCL12-202ENST00000374426 IFT172Q9UG01 1749 aa20.62■□□□□ 0.89
CXCL12-202ENST00000374426 FOXO3O43524 673 aa20.62■□□□□ 0.89
CXCL12-202ENST00000374426 PIK3C2GO75747 1445 aa20.61■□□□□ 0.89
CXCL12-202ENST00000374426 PLEKHH1Q9ULM0 1364 aa20.61■□□□□ 0.89
CXCL12-202ENST00000374426 XPCQ01831 940 aaPredicted RBP20.61■□□□□ 0.89
CXCL12-202ENST00000374426 TMEM132EQ6IEE7 984 aa20.61■□□□□ 0.89
CXCL12-202ENST00000374426 TRPC5Q9UL62 973 aaPredicted RBP20.61■□□□□ 0.89
CXCL12-202ENST00000374426 EP400Q96L91 3159 aa20.6■□□□□ 0.89
CXCL12-202ENST00000374426 NUTM2FA1L443 756 aa20.6■□□□□ 0.89
CXCL12-202ENST00000374426 ATRNO75882 1429 aa20.59■□□□□ 0.89
CXCL12-202ENST00000374426 KNDC1Q76NI1 1749 aa20.58■□□□□ 0.88
CXCL12-202ENST00000374426 YTHDC2Q9H6S0 1430 aaKnown RBP20.56■□□□□ 0.88
CXCL12-202ENST00000374426 BCL9LQ86UU0 1499 aa20.56■□□□□ 0.88
CXCL12-202ENST00000374426 ATAD2Q6PL18 1390 aa20.55■□□□□ 0.88
CXCL12-202ENST00000374426 FMN2Q9NZ56 1722 aa20.53■□□□□ 0.88
CXCL12-202ENST00000374426 C14orf93Q9H972 538 aaKnown RBP20.52■□□□□ 0.88
CXCL12-202ENST00000374426 MARF1Q9Y4F3 1742 aaKnown RBP20.52■□□□□ 0.88
CXCL12-202ENST00000374426 NRXN1Q9ULB1 1477 aa20.51■□□□□ 0.87
CXCL12-202ENST00000374426 SIRT1Q96EB6 747 aa20.51■□□□□ 0.87
CXCL12-202ENST00000374426 SPATA31A3Q5VYP0 1347 aa20.51■□□□□ 0.87
CXCL12-202ENST00000374426 KIF1AQ12756 1690 aa20.49■□□□□ 0.87
CXCL12-202ENST00000374426 CFAP70Q5T0N1 1121 aa20.49■□□□□ 0.87
CXCL12-202ENST00000374426 GJD4Q96KN9 370 aaPredicted RBP20.48■□□□□ 0.87
CXCL12-202ENST00000374426 KRT28Q7Z3Y7 464 aa20.47■□□□□ 0.87
CXCL12-202ENST00000374426 ACIN1Q9UKV3 1341 aaKnown RBP20.47■□□□□ 0.87
CXCL12-202ENST00000374426 DHX57Q6P158 1386 aaKnown RBP20.46■□□□□ 0.87
CXCL12-202ENST00000374426 SLIT2O94813 1529 aa20.46■□□□□ 0.87
CXCL12-202ENST00000374426 PHF8Q9UPP1 1060 aa20.45■□□□□ 0.86
CXCL12-202ENST00000374426 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.44■□□□□ 0.86
CXCL12-202ENST00000374426 UNC5CLQ8IV45 518 aa20.44■□□□□ 0.86
CXCL12-202ENST00000374426 PRAM1Q96QH2 718 aa20.44■□□□□ 0.86
CXCL12-202ENST00000374426 RGPD8O14715 1765 aaPredicted RBP20.44■□□□□ 0.86
CXCL12-202ENST00000374426 USP32Q8NFA0 1604 aa20.43■□□□□ 0.86
CXCL12-202ENST00000374426 SAFB2Q14151 953 aaKnown RBP eCLIP20.43■□□□□ 0.86
CXCL12-202ENST00000374426 TNS3Q68CZ2 1445 aa20.43■□□□□ 0.86
CXCL12-202ENST00000374426 RALGAPBQ86X10 1494 aa20.43■□□□□ 0.86
CXCL12-202ENST00000374426 GLI3P10071 1580 aa20.42■□□□□ 0.86
CXCL12-202ENST00000374426 PSME1Q06323 249 aa20.41■□□□□ 0.86
CXCL12-202ENST00000374426 CABLES1Q8TDN4 633 aa20.4■□□□□ 0.86
CXCL12-202ENST00000374426 DLC1Q96QB1 1528 aa20.4■□□□□ 0.86
CXCL12-202ENST00000374426 RAB3GAP2Q9H2M9 1393 aa20.4■□□□□ 0.86
CXCL12-202ENST00000374426 SBNO1A3KN83 1393 aa20.39■□□□□ 0.85
CXCL12-202ENST00000374426 CCDC125Q86Z20 511 aa20.39■□□□□ 0.85
CXCL12-202ENST00000374426 ADGRB1O14514 1584 aa20.38■□□□□ 0.85
CXCL12-202ENST00000374426 HAP1P54257 671 aaPredicted RBP20.38■□□□□ 0.85
CXCL12-202ENST00000374426 POGKQ9P215 609 aa20.38■□□□□ 0.85
CXCL12-202ENST00000374426 ANKARQ7Z5J8 1434 aa20.37■□□□□ 0.85
CXCL12-202ENST00000374426 ARHGEF10O15013 1369 aa20.36■□□□□ 0.85
CXCL12-202ENST00000374426 PLEKHG5O94827 1062 aa20.36■□□□□ 0.85
CXCL12-202ENST00000374426 LMOD2Q6P5Q4 547 aa20.36■□□□□ 0.85
CXCL12-202ENST00000374426 PMFBP1Q8TBY8 1022 aa20.36■□□□□ 0.85
CXCL12-202ENST00000374426 ADGRB2O60241 1585 aa20.36■□□□□ 0.85
CXCL12-202ENST00000374426 VPS72Q15906 364 aa20.35■□□□□ 0.85
CXCL12-202ENST00000374426 ZRANB1Q9UGI0 708 aa20.35■□□□□ 0.85
CXCL12-202ENST00000374426 ABCA3Q99758 1704 aa20.34■□□□□ 0.85
CXCL12-202ENST00000374426 TRAK1Q9UPV9 953 aa20.34■□□□□ 0.85
CXCL12-202ENST00000374426 SEPT12Q8IYM1 358 aa20.33■□□□□ 0.85
CXCL12-202ENST00000374426 HIRIP3Q9BW71 556 aaPredicted RBP20.33■□□□□ 0.85
CXCL12-202ENST00000374426 PLCH1Q4KWH8 1693 aa20.32■□□□□ 0.84
CXCL12-202ENST00000374426 BLMP54132 1417 aaPredicted RBP20.32■□□□□ 0.84
CXCL12-202ENST00000374426 NWD2Q9ULI1 1742 aa20.32■□□□□ 0.84
CXCL12-202ENST00000374426 BRWD3Q6RI45 1802 aa20.32■□□□□ 0.84
CXCL12-202ENST00000374426 FAM83GA6ND36 823 aa20.31■□□□□ 0.84
CXCL12-202ENST00000374426 ONECUT3O60422 494 aaPredicted RBP20.31■□□□□ 0.84
CXCL12-202ENST00000374426 MINK1Q8N4C8 1332 aaPredicted RBP20.3■□□□□ 0.84
CXCL12-202ENST00000374426 PRR36Q9H6K5 1346 aa20.3■□□□□ 0.84
CXCL12-202ENST00000374426 DCAF11Q8TEB1 546 aa20.3■□□□□ 0.84
CXCL12-202ENST00000374426 KDM2AQ9Y2K7 1162 aa20.3■□□□□ 0.84
CXCL12-202ENST00000374426 TRPM3Q9HCF6 1732 aaPredicted RBP20.3■□□□□ 0.84
CXCL12-202ENST00000374426 CCDC9Q9Y3X0 531 aaKnown RBP20.29■□□□□ 0.84
CXCL12-202ENST00000374426 TULP4Q9NRJ4 1543 aa20.27■□□□□ 0.84
CXCL12-202ENST00000374426 EIF3AQ14152 1382 aaKnown RBP20.27■□□□□ 0.84
CXCL12-202ENST00000374426 GPRASP1Q5JY77 1395 aa20.27■□□□□ 0.84
CXCL12-202ENST00000374426 WASLO00401 505 aaPredicted RBP20.27■□□□□ 0.84
CXCL12-202ENST00000374426 ALS2Q96Q42 1657 aa20.26■□□□□ 0.83
CXCL12-202ENST00000374426 DEFB132Q7Z7B7 95 aa20.26■□□□□ 0.83
CXCL12-202ENST00000374426 KRT27Q7Z3Y8 459 aa20.25■□□□□ 0.83
CXCL12-202ENST00000374426 STAC3Q96MF2 364 aa20.25■□□□□ 0.83
CXCL12-202ENST00000374426 BTG4Q9NY30 223 aa20.24■□□□□ 0.83
CXCL12-202ENST00000374426 NRAPQ86VF7 1730 aa20.24■□□□□ 0.83
CXCL12-202ENST00000374426 SF3B2Q13435 895 aaKnown RBP20.21■□□□□ 0.83
CXCL12-202ENST00000374426 FAM98CQ17RN3 349 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms