RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ABCC11Q96J66 1382 aa19.75■□□□□ 0.75
HMGA1-203ENST00000374116 C14orf37Q86TY3 774 aa19.75■□□□□ 0.75
HMGA1-203ENST00000374116 CPS1P31327 1500 aa19.74■□□□□ 0.75
HMGA1-203ENST00000374116 NKTRP30414 1462 aaKnown RBP19.74■□□□□ 0.75
HMGA1-203ENST00000374116 CCER2I3L3R5 266 aa19.73■□□□□ 0.75
HMGA1-203ENST00000374116 ANP32CO43423 234 aa19.73■□□□□ 0.75
HMGA1-203ENST00000374116 POGKQ9P215 609 aa19.73■□□□□ 0.75
HMGA1-203ENST00000374116 CERKQ8TCT0 537 aa19.72■□□□□ 0.75
HMGA1-203ENST00000374116 KNDC1Q76NI1 1749 aa19.72■□□□□ 0.75
HMGA1-203ENST00000374116 TECPR2O15040 1411 aa19.72■□□□□ 0.75
HMGA1-203ENST00000374116 ARHGEF28Q8N1W1 1705 aaKnown RBP19.72■□□□□ 0.75
HMGA1-203ENST00000374116 PTCH1Q13635 1447 aa19.71■□□□□ 0.75
HMGA1-203ENST00000374116 WASHC2AQ641Q2 1341 aa19.7■□□□□ 0.74
HMGA1-203ENST00000374116 GPRASP1Q5JY77 1395 aa19.7■□□□□ 0.74
HMGA1-203ENST00000374116 MINK1Q8N4C8 1332 aaPredicted RBP19.69■□□□□ 0.74
HMGA1-203ENST00000374116 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.69■□□□□ 0.74
HMGA1-203ENST00000374116 NALCNQ8IZF0 1738 aa19.67■□□□□ 0.74
HMGA1-203ENST00000374116 NUTM2FA1L443 756 aa19.67■□□□□ 0.74
HMGA1-203ENST00000374116 DLC1Q96QB1 1528 aa19.66■□□□□ 0.74
HMGA1-203ENST00000374116 FAM135BQ49AJ0 1406 aa19.65■□□□□ 0.74
HMGA1-203ENST00000374116 CENPJQ9HC77 1338 aaPredicted RBP19.64■□□□□ 0.74
HMGA1-203ENST00000374116 ST20-MTHFSA0A0A6YYL1 179 aa19.64■□□□□ 0.73
HMGA1-203ENST00000374116 C11orf95C9JLR9 678 aaPredicted RBP19.64■□□□□ 0.73
HMGA1-203ENST00000374116 USP47Q96K76 1375 aa19.64■□□□□ 0.73
HMGA1-203ENST00000374116 SIRT1Q96EB6 747 aa19.63■□□□□ 0.73
HMGA1-203ENST00000374116 C19orf44Q9H6X5 657 aa19.63■□□□□ 0.73
HMGA1-203ENST00000374116 MSH6P52701 1360 aa19.63■□□□□ 0.73
HMGA1-203ENST00000374116 CCDC7Q96M83 1385 aa19.63■□□□□ 0.73
HMGA1-203ENST00000374116 ADGRL3Q9HAR2 1447 aa19.62■□□□□ 0.73
HMGA1-203ENST00000374116 QRICH2Q9H0J4 1663 aa19.62■□□□□ 0.73
HMGA1-203ENST00000374116 UBAP1LF5GYI3 381 aa19.6■□□□□ 0.73
HMGA1-203ENST00000374116 ATF3P18847 181 aa19.6■□□□□ 0.73
HMGA1-203ENST00000374116 EIF3AQ14152 1382 aaKnown RBP19.6■□□□□ 0.73
HMGA1-203ENST00000374116 PIP4K2BP78356 416 aa19.59■□□□□ 0.73
HMGA1-203ENST00000374116 NCOA3Q9Y6Q9 1424 aa19.58■□□□□ 0.72
HMGA1-203ENST00000374116 KIF7Q2M1P5 1343 aa19.55■□□□□ 0.72
HMGA1-203ENST00000374116 CADPS2Q86UW7 1296 aa19.55■□□□□ 0.72
HMGA1-203ENST00000374116 TESK2Q96S53 571 aa19.55■□□□□ 0.72
HMGA1-203ENST00000374116 CDK19Q9BWU1 502 aa19.55■□□□□ 0.72
HMGA1-203ENST00000374116 SLAIN2Q9P270 581 aa19.55■□□□□ 0.72
HMGA1-203ENST00000374116 RGPD8O14715 1765 aaPredicted RBP19.54■□□□□ 0.72
HMGA1-203ENST00000374116 WASLO00401 505 aaPredicted RBP19.54■□□□□ 0.72
HMGA1-203ENST00000374116 CABP2Q9NPB3 220 aa19.54■□□□□ 0.72
HMGA1-203ENST00000374116 TOM1O60784 492 aa19.53■□□□□ 0.72
HMGA1-203ENST00000374116 SRPK2P78362 688 aaKnown RBP19.53■□□□□ 0.72
HMGA1-203ENST00000374116 ORAI2Q96SN7 254 aa19.53■□□□□ 0.72
HMGA1-203ENST00000374116 CDC42BPGQ6DT37 1551 aa19.52■□□□□ 0.72
HMGA1-203ENST00000374116 MST1RQ04912 1400 aa19.52■□□□□ 0.72
HMGA1-203ENST00000374116 TULP4Q9NRJ4 1543 aa19.52■□□□□ 0.72
HMGA1-203ENST00000374116 IQSEC2Q5JU85 1478 aa19.52■□□□□ 0.72
HMGA1-203ENST00000374116 ADGRB2O60241 1585 aa19.51■□□□□ 0.71
HMGA1-203ENST00000374116 PRR36Q9H6K5 1346 aa19.51■□□□□ 0.71
HMGA1-203ENST00000374116 FMN2Q9NZ56 1722 aa19.51■□□□□ 0.71
HMGA1-203ENST00000374116 DCCP43146 1447 aa19.5■□□□□ 0.71
HMGA1-203ENST00000374116 DDX17Q92841 729 aaKnown RBP19.5■□□□□ 0.71
HMGA1-203ENST00000374116 DISP3Q9P2K9 1392 aa19.49■□□□□ 0.71
HMGA1-203ENST00000374116 ESCO1Q5FWF5 840 aa19.49■□□□□ 0.71
HMGA1-203ENST00000374116 EVC2Q86UK5 1308 aa19.49■□□□□ 0.71
HMGA1-203ENST00000374116 C1orf167Q5SNV9 1468 aa19.49■□□□□ 0.71
HMGA1-203ENST00000374116 USP32Q8NFA0 1604 aa19.49■□□□□ 0.71
HMGA1-203ENST00000374116 PMFBP1Q8TBY8 1022 aa19.47■□□□□ 0.71
HMGA1-203ENST00000374116 NUDT16Q96DE0 195 aaKnown RBP19.47■□□□□ 0.71
HMGA1-203ENST00000374116 POLR3GLQ9BT43 218 aa19.47■□□□□ 0.71
HMGA1-203ENST00000374116 BRINP3Q76B58 766 aa19.46■□□□□ 0.71
HMGA1-203ENST00000374116 ROBO1Q9Y6N7 1651 aa19.46■□□□□ 0.71
HMGA1-203ENST00000374116 SBNO2Q9Y2G9 1366 aa19.45■□□□□ 0.7
HMGA1-203ENST00000374116 ATP7BP35670 1465 aa19.44■□□□□ 0.7
HMGA1-203ENST00000374116 TMF1P82094 1093 aa19.44■□□□□ 0.7
HMGA1-203ENST00000374116 XPCQ01831 940 aaPredicted RBP19.44■□□□□ 0.7
HMGA1-203ENST00000374116 FOXO3O43524 673 aa19.42■□□□□ 0.7
HMGA1-203ENST00000374116 CABP1Q9NZU7 370 aa19.41■□□□□ 0.7
HMGA1-203ENST00000374116 TMC1Q8TDI8 760 aa19.41■□□□□ 0.7
HMGA1-203ENST00000374116 PRKRIP1Q9H875 184 aaPredicted RBP19.4■□□□□ 0.7
HMGA1-203ENST00000374116 PHF8Q9UPP1 1060 aa19.4■□□□□ 0.7
HMGA1-203ENST00000374116 CCDC61Q9Y6R9 512 aa19.39■□□□□ 0.7
HMGA1-203ENST00000374116 PPIP5K1Q6PFW1 1433 aa19.39■□□□□ 0.69
HMGA1-203ENST00000374116 ANKARQ7Z5J8 1434 aa19.39■□□□□ 0.69
HMGA1-203ENST00000374116 SLC12A5Q9H2X9 1139 aa19.39■□□□□ 0.69
HMGA1-203ENST00000374116 HSPA1LP34931 641 aa19.37■□□□□ 0.69
HMGA1-203ENST00000374116 NGDNQ8NEJ9 315 aaKnown RBP19.37■□□□□ 0.69
HMGA1-203ENST00000374116 TOPAZ1Q8N9V7 1692 aa19.36■□□□□ 0.69
HMGA1-203ENST00000374116 ACEP12821 1306 aa19.35■□□□□ 0.69
HMGA1-203ENST00000374116 ITSN1Q15811 1721 aa19.35■□□□□ 0.69
HMGA1-203ENST00000374116 ATAD2Q6PL18 1390 aa19.34■□□□□ 0.69
HMGA1-203ENST00000374116 PLEKHG5O94827 1062 aa19.32■□□□□ 0.68
HMGA1-203ENST00000374116 PSME1Q06323 249 aa19.32■□□□□ 0.68
HMGA1-203ENST00000374116 PHLPP1O60346 1717 aa19.32■□□□□ 0.68
HMGA1-203ENST00000374116 PLEKHG3A1L390 1219 aa19.32■□□□□ 0.68
HMGA1-203ENST00000374116 SLC24A1O60721 1099 aa19.32■□□□□ 0.68
HMGA1-203ENST00000374116 KRT28Q7Z3Y7 464 aa19.31■□□□□ 0.68
HMGA1-203ENST00000374116 KIF1AQ12756 1690 aa19.3■□□□□ 0.68
HMGA1-203ENST00000374116 CDCA8Q53HL2 280 aa19.3■□□□□ 0.68
HMGA1-203ENST00000374116 NHSL1Q5SYE7 1610 aa19.3■□□□□ 0.68
HMGA1-203ENST00000374116 NPHP3Q7Z494 1330 aa19.29■□□□□ 0.68
HMGA1-203ENST00000374116 MYOM1P52179 1685 aa19.29■□□□□ 0.68
HMGA1-203ENST00000374116 PAK3O75914 559 aaPredicted RBP19.29■□□□□ 0.68
HMGA1-203ENST00000374116 CCDC184Q52MB2 194 aa19.29■□□□□ 0.68
HMGA1-203ENST00000374116 CD163L1Q9NR16 1453 aa19.28■□□□□ 0.68
HMGA1-203ENST00000374116 LMOD2Q6P5Q4 547 aa19.28■□□□□ 0.68
HMGA1-203ENST00000374116 POLR3AO14802 1390 aaPredicted RBP19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms