RNA–Protein interactions for RNA: ENST00000373316.4

PGK1-201, Transcript of phosphoglycerate kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PGK1, Length 4,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1-201ENST00000373316 NINLQ9Y2I6 1382 aa13.35□□□□□ -0.27
PGK1-201ENST00000373316 PTMAP06454 111 aaKnown RBP13.34□□□□□ -0.27
PGK1-201ENST00000373316 PANK3Q9H999 370 aa13.34□□□□□ -0.27
PGK1-201ENST00000373316 TRPM2O94759 1503 aa13.34□□□□□ -0.27
PGK1-201ENST00000373316 CFAP74Q9C0B2 1584 aa13.34□□□□□ -0.27
PGK1-201ENST00000373316 SYAP1Q96A49 352 aaPredicted RBP13.34□□□□□ -0.27
PGK1-201ENST00000373316 MROH2AA6NES4 1674 aa13.34□□□□□ -0.27
PGK1-201ENST00000373316 VGFO15240 615 aaPredicted RBP13.34□□□□□ -0.27
PGK1-201ENST00000373316 RTF1Q92541 710 aaKnown RBP13.34□□□□□ -0.27
PGK1-201ENST00000373316 CSPP1Q1MSJ5 1256 aa13.33□□□□□ -0.28
PGK1-201ENST00000373316 VWDEQ8N2E2 1590 aa13.32□□□□□ -0.28
PGK1-201ENST00000373316 EVC2Q86UK5 1308 aa13.32□□□□□ -0.28
PGK1-201ENST00000373316 RNF17Q9BXT8 1623 aaKnown RBP13.32□□□□□ -0.28
PGK1-201ENST00000373316 TRPM1Q7Z4N2 1603 aa13.32□□□□□ -0.28
PGK1-201ENST00000373316 RRP1P56182 461 aaKnown RBP13.31□□□□□ -0.28
PGK1-201ENST00000373316 GLI2P10070 1586 aa13.3□□□□□ -0.28
PGK1-201ENST00000373316 NUTM2FA1L443 756 aa13.29□□□□□ -0.28
PGK1-201ENST00000373316 NEUROD2Q15784 382 aa13.29□□□□□ -0.28
PGK1-201ENST00000373316 FAM161AQ3B820 660 aa13.29□□□□□ -0.28
PGK1-201ENST00000373316 DEKP35659 375 aaKnown RBP13.29□□□□□ -0.28
PGK1-201ENST00000373316 CHAF1AQ13111 956 aaPredicted RBP13.28□□□□□ -0.28
PGK1-201ENST00000373316 SKOR2Q2VWA4 1001 aaPredicted RBP13.28□□□□□ -0.28
PGK1-201ENST00000373316 U2AF1L5P0DN76 240 aaPredicted RBP13.28□□□□□ -0.28
PGK1-201ENST00000373316 U2AF1Q01081 240 aaKnown RBP eCLIP13.28□□□□□ -0.281e-6■■■□□ 15.3
PGK1-201ENST00000373316 DDX11L8A8MPP1 907 aa13.28□□□□□ -0.28
PGK1-201ENST00000373316 LAS1LQ9Y4W2 734 aaKnown RBP13.28□□□□□ -0.28
PGK1-201ENST00000373316 CDK11BP21127 795 aaKnown RBP13.27□□□□□ -0.28
PGK1-201ENST00000373316 SYNMO15061 1565 aa13.27□□□□□ -0.28
PGK1-201ENST00000373316 EIF2AK4Q9P2K8 1649 aaKnown RBP13.27□□□□□ -0.28
PGK1-201ENST00000373316 MINK1Q8N4C8 1332 aaPredicted RBP13.27□□□□□ -0.29
PGK1-201ENST00000373316 CAMSAP1Q5T5Y3 1602 aa13.27□□□□□ -0.29
PGK1-201ENST00000373316 C14orf37Q86TY3 774 aa13.27□□□□□ -0.29
PGK1-201ENST00000373316 CABP2Q9NPB3 220 aa13.27□□□□□ -0.29
PGK1-201ENST00000373316 WAPLQ7Z5K2 1190 aa13.27□□□□□ -0.29
PGK1-201ENST00000373316 RBM33Q96EV2 1170 aaKnown RBP13.27□□□□□ -0.29
PGK1-201ENST00000373316 GPATCH3Q96I76 525 aa13.27□□□□□ -0.29
PGK1-201ENST00000373316 MADDQ8WXG6 1647 aa13.26□□□□□ -0.29
PGK1-201ENST00000373316 OS9Q13438 667 aaPredicted RBP13.25□□□□□ -0.29
PGK1-201ENST00000373316 SLC12A5Q9H2X9 1139 aa13.25□□□□□ -0.29
PGK1-201ENST00000373316 MSNP26038 577 aaKnown RBP13.25□□□□□ -0.29
PGK1-201ENST00000373316 CLTCQ00610 1675 aaKnown RBP13.25□□□□□ -0.29
PGK1-201ENST00000373316 ZMYM3Q14202 1370 aa13.25□□□□□ -0.29
PGK1-201ENST00000373316 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.24□□□□□ -0.29
PGK1-201ENST00000373316 KIAA1211Q6ZU35 1233 aa13.24□□□□□ -0.29
PGK1-201ENST00000373316 STK31Q9BXU1 1019 aa13.24□□□□□ -0.29
PGK1-201ENST00000373316 MYO5BQ9ULV0 1848 aa13.24□□□□□ -0.29
PGK1-201ENST00000373316 PHF14O94880 888 aa13.24□□□□□ -0.29
PGK1-201ENST00000373316 KIF1BO60333 1816 aa13.23□□□□□ -0.29
PGK1-201ENST00000373316 SLC26A8Q96RN1 970 aa13.23□□□□□ -0.29
PGK1-201ENST00000373316 NCKAP5LQ9HCH0 1330 aa13.23□□□□□ -0.29
PGK1-201ENST00000373316 GOLGA6L4A6NEF3 574 aa13.22□□□□□ -0.29
PGK1-201ENST00000373316 CT47B1P0C2W7 299 aaPredicted RBP13.22□□□□□ -0.29
PGK1-201ENST00000373316 ZKSCAN2Q63HK3 967 aa13.22□□□□□ -0.29
PGK1-201ENST00000373316 SMC4Q9NTJ3 1288 aa13.22□□□□□ -0.29
PGK1-201ENST00000373316 ITPRIPQ8IWB1 547 aa13.22□□□□□ -0.29
PGK1-201ENST00000373316 PRAM1Q96QH2 718 aa13.22□□□□□ -0.29
PGK1-201ENST00000373316 EID1Q9Y6B2 187 aa13.22□□□□□ -0.29
PGK1-201ENST00000373316 GPRASP1Q5JY77 1395 aa13.21□□□□□ -0.29
PGK1-201ENST00000373316 DNAJC5Q9H3Z4 198 aa13.21□□□□□ -0.29
PGK1-201ENST00000373316 C14orf93Q9H972 538 aaKnown RBP13.21□□□□□ -0.29
PGK1-201ENST00000373316 DDX19BQ9UMR2 479 aa13.21□□□□□ -0.29
PGK1-201ENST00000373316 TXNDC2Q86VQ3 553 aa13.21□□□□□ -0.3
PGK1-201ENST00000373316 PER1O15534 1290 aaPredicted RBP13.21□□□□□ -0.3
PGK1-201ENST00000373316 KCNJ4P48050 445 aa13.21□□□□□ -0.3
PGK1-201ENST00000373316 SMG6Q86US8 1419 aaKnown RBP13.2□□□□□ -0.3
PGK1-201ENST00000373316 FBLN1P23142 703 aa13.2□□□□□ -0.3
PGK1-201ENST00000373316 DNTTIP2Q5QJE6 756 aaKnown RBP13.2□□□□□ -0.3
PGK1-201ENST00000373316 ST18O60284 1047 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 KIF3AQ9Y496 699 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 LMTK2Q8IWU2 1503 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 GOLGA6L3A6NEY3 463 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 SLC52A1Q9NWF4 448 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 RPGRIP1LQ68CZ1 1315 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 KIF16BQ96L93 1317 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 ADGRB3O60242 1522 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 PLEKHG5O94827 1062 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 CARD14Q9BXL6 1004 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 SCAF11Q99590 1463 aaKnown RBP13.19□□□□□ -0.3
PGK1-201ENST00000373316 RUNDC1Q96C34 613 aa13.19□□□□□ -0.3
PGK1-201ENST00000373316 CCDC34Q96HJ3 373 aa13.18□□□□□ -0.3
PGK1-201ENST00000373316 PDE4AP27815 886 aa13.18□□□□□ -0.3
PGK1-201ENST00000373316 API5Q9BZZ5 524 aaKnown RBP13.18□□□□□ -0.3
PGK1-201ENST00000373316 ZMYM4Q5VZL5 1548 aa13.18□□□□□ -0.3
PGK1-201ENST00000373316 ERVK-7P63135 1459 aa13.18□□□□□ -0.3
PGK1-201ENST00000373316 NAP1L5Q96NT1 182 aaPredicted RBP13.17□□□□□ -0.3
PGK1-201ENST00000373316 PIK3C2BO00750 1634 aa13.17□□□□□ -0.3
PGK1-201ENST00000373316 PIK3C2GO75747 1445 aa13.17□□□□□ -0.3
PGK1-201ENST00000373316 LTKP29376 864 aa13.17□□□□□ -0.3
PGK1-201ENST00000373316 FGD1P98174 961 aa13.17□□□□□ -0.3
PGK1-201ENST00000373316 PLEKHH1Q9ULM0 1364 aa13.17□□□□□ -0.3
PGK1-201ENST00000373316 KIAA2012Q0VF49 1180 aa13.16□□□□□ -0.3
PGK1-201ENST00000373316 ATP6V1DQ9Y5K8 247 aa13.16□□□□□ -0.3
PGK1-201ENST00000373316 PREX1Q8TCU6 1659 aa13.16□□□□□ -0.3
PGK1-201ENST00000373316 TPM4P67936 248 aa13.15□□□□□ -0.3
PGK1-201ENST00000373316 ARHGEF40Q8TER5 1519 aa13.14□□□□□ -0.31
PGK1-201ENST00000373316 NEXMIFQ5QGS0 1516 aa13.14□□□□□ -0.31
PGK1-201ENST00000373316 CCDC146Q8IYE0 955 aa13.14□□□□□ -0.31
PGK1-201ENST00000373316 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.12□□□□□ -0.312e-8■□□□□ 9.3
PGK1-201ENST00000373316 WWC1Q8IX03 1113 aa13.12□□□□□ -0.31
PGK1-201ENST00000373316 METP08581 1390 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms