RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 RXRBP28702 533 aa21.51■■□□□ 1.03
PRPF40A-201ENST00000354363 LRPPRCP42704 1394 aaKnown RBP21.51■■□□□ 1.03
PRPF40A-201ENST00000354363 STK26Q9P289 416 aa21.51■■□□□ 1.03
PRPF40A-201ENST00000354363 ACIN1Q9UKV3 1341 aaKnown RBP21.5■■□□□ 1.03
PRPF40A-201ENST00000354363 C8orf37Q96NL8 207 aa21.5■■□□□ 1.03
PRPF40A-201ENST00000354363 CDK12Q9NYV4 1490 aaPredicted RBP21.49■■□□□ 1.03
PRPF40A-201ENST00000354363 ABCC11Q96J66 1382 aa21.48■■□□□ 1.03
PRPF40A-201ENST00000354363 TMEM132EQ6IEE7 984 aa21.48■■□□□ 1.03
PRPF40A-201ENST00000354363 WAPLQ7Z5K2 1190 aa21.48■■□□□ 1.03
PRPF40A-201ENST00000354363 COL22A1Q8NFW1 1626 aaPredicted RBP21.48■■□□□ 1.03
PRPF40A-201ENST00000354363 ESCO1Q5FWF5 840 aa21.46■■□□□ 1.03
PRPF40A-201ENST00000354363 FMN2Q9NZ56 1722 aa21.46■■□□□ 1.03
PRPF40A-201ENST00000354363 PLEKHH1Q9ULM0 1364 aa21.46■■□□□ 1.03
PRPF40A-201ENST00000354363 YTHDC2Q9H6S0 1430 aaKnown RBP21.45■■□□□ 1.02
PRPF40A-201ENST00000354363 ADAMTS2O95450 1211 aa21.45■■□□□ 1.02
PRPF40A-201ENST00000354363 NPHP3Q7Z494 1330 aa21.44■■□□□ 1.02
PRPF40A-201ENST00000354363 PXDNQ92626 1479 aa21.44■■□□□ 1.02
PRPF40A-201ENST00000354363 NRXN1Q9ULB1 1477 aa21.44■■□□□ 1.02
PRPF40A-201ENST00000354363 UPF1Q92900 1129 aaKnown RBP eCLIP21.44■■□□□ 1.02
PRPF40A-201ENST00000354363 QTRT2Q9H974 415 aaKnown RBP21.44■■□□□ 1.02
PRPF40A-201ENST00000354363 RAB3GAP2Q9H2M9 1393 aa21.43■■□□□ 1.02
PRPF40A-201ENST00000354363 NGLY1Q96IV0 654 aa21.43■■□□□ 1.02
PRPF40A-201ENST00000354363 MYOM2P54296 1465 aa21.43■■□□□ 1.02
PRPF40A-201ENST00000354363 RGPD8O14715 1765 aaPredicted RBP21.42■■□□□ 1.02
PRPF40A-201ENST00000354363 C14orf93Q9H972 538 aaKnown RBP21.42■■□□□ 1.02
PRPF40A-201ENST00000354363 MARF1Q9Y4F3 1742 aaKnown RBP21.42■■□□□ 1.02
PRPF40A-201ENST00000354363 NUTM2FA1L443 756 aa21.41■■□□□ 1.02
PRPF40A-201ENST00000354363 RBM6P78332 1123 aaKnown RBP21.41■■□□□ 1.02
PRPF40A-201ENST00000354363 RGS12O14924 1447 aa21.4■■□□□ 1.02
PRPF40A-201ENST00000354363 FOXO3O43524 673 aa21.4■■□□□ 1.02
PRPF40A-201ENST00000354363 XPCQ01831 940 aaPredicted RBP21.39■■□□□ 1.01
PRPF40A-201ENST00000354363 SIRT1Q96EB6 747 aa21.39■■□□□ 1.01
PRPF40A-201ENST00000354363 KIF1AQ12756 1690 aa21.39■■□□□ 1.01
PRPF40A-201ENST00000354363 CFAP70Q5T0N1 1121 aa21.38■■□□□ 1.01
PRPF40A-201ENST00000354363 DHX57Q6P158 1386 aaKnown RBP21.37■■□□□ 1.01
PRPF40A-201ENST00000354363 USP21Q9UK80 565 aa21.37■■□□□ 1.01
PRPF40A-201ENST00000354363 FNBP4Q8N3X1 1017 aaPredicted RBP21.36■■□□□ 1.01
PRPF40A-201ENST00000354363 TRPC5Q9UL62 973 aaPredicted RBP21.33■■□□□ 1
PRPF40A-201ENST00000354363 ATRNO75882 1429 aa21.32■■□□□ 1
PRPF40A-201ENST00000354363 DLC1Q96QB1 1528 aa21.32■■□□□ 1
PRPF40A-201ENST00000354363 PRAM1Q96QH2 718 aa21.3■■□□□ 1
PRPF40A-201ENST00000354363 SPATA31A3Q5VYP0 1347 aa21.3■■□□□ 1
PRPF40A-201ENST00000354363 ADGRB1O14514 1584 aa21.3■■□□□ 1
PRPF40A-201ENST00000354363 SAFB2Q14151 953 aaKnown RBP eCLIP21.29■■□□□ 1
PRPF40A-201ENST00000354363 KRT28Q7Z3Y7 464 aa21.29■■□□□ 1
PRPF40A-201ENST00000354363 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.28■■□□□ 1
PRPF40A-201ENST00000354363 BCL9LQ86UU0 1499 aa21.28■■□□□ 1
PRPF40A-201ENST00000354363 PHF8Q9UPP1 1060 aa21.28■■□□□ 1
PRPF40A-201ENST00000354363 USP32Q8NFA0 1604 aa21.28■■□□□ 1
PRPF40A-201ENST00000354363 ADGRB2O60241 1585 aa21.27■■□□□ 1
PRPF40A-201ENST00000354363 POGKQ9P215 609 aa21.26■□□□□ 0.99
PRPF40A-201ENST00000354363 HRCP23327 699 aa21.25■□□□□ 0.99
PRPF40A-201ENST00000354363 KDM2AQ9Y2K7 1162 aa21.25■□□□□ 0.99
PRPF40A-201ENST00000354363 TNS3Q68CZ2 1445 aa21.24■□□□□ 0.99
PRPF40A-201ENST00000354363 DCAF11Q8TEB1 546 aa21.23■□□□□ 0.99
PRPF40A-201ENST00000354363 ABCA3Q99758 1704 aa21.23■□□□□ 0.99
PRPF40A-201ENST00000354363 PSME1Q06323 249 aa21.22■□□□□ 0.99
PRPF40A-201ENST00000354363 TRAK1Q9UPV9 953 aa21.22■□□□□ 0.99
PRPF40A-201ENST00000354363 ATAD2Q6PL18 1390 aa21.22■□□□□ 0.99
PRPF40A-201ENST00000354363 ANKARQ7Z5J8 1434 aa21.22■□□□□ 0.99
PRPF40A-201ENST00000354363 SLIT2O94813 1529 aa21.22■□□□□ 0.99
PRPF40A-201ENST00000354363 SBNO1A3KN83 1393 aa21.21■□□□□ 0.99
PRPF40A-201ENST00000354363 GJD4Q96KN9 370 aaPredicted RBP21.19■□□□□ 0.98
PRPF40A-201ENST00000354363 STAC3Q96MF2 364 aa21.19■□□□□ 0.98
PRPF40A-201ENST00000354363 TRPM3Q9HCF6 1732 aaPredicted RBP21.19■□□□□ 0.98
PRPF40A-201ENST00000354363 ARHGEF28Q8N1W1 1705 aaKnown RBP21.19■□□□□ 0.98
PRPF40A-201ENST00000354363 UNC5CLQ8IV45 518 aa21.18■□□□□ 0.98
PRPF40A-201ENST00000354363 PMFBP1Q8TBY8 1022 aa21.18■□□□□ 0.98
PRPF40A-201ENST00000354363 HIRIP3Q9BW71 556 aaPredicted RBP21.18■□□□□ 0.98
PRPF40A-201ENST00000354363 GLI3P10071 1580 aa21.18■□□□□ 0.98
PRPF40A-201ENST00000354363 PLCH1Q4KWH8 1693 aa21.18■□□□□ 0.98
PRPF40A-201ENST00000354363 MINK1Q8N4C8 1332 aaPredicted RBP21.17■□□□□ 0.98
PRPF40A-201ENST00000354363 CABLES1Q8TDN4 633 aa21.17■□□□□ 0.98
PRPF40A-201ENST00000354363 NWD2Q9ULI1 1742 aa21.17■□□□□ 0.98
PRPF40A-201ENST00000354363 ARHGEF10O15013 1369 aa21.16■□□□□ 0.98
PRPF40A-201ENST00000354363 TULP4Q9NRJ4 1543 aa21.16■□□□□ 0.98
PRPF40A-201ENST00000354363 HAP1P54257 671 aaPredicted RBP21.16■□□□□ 0.98
PRPF40A-201ENST00000354363 BRWD3Q6RI45 1802 aa21.16■□□□□ 0.98
PRPF40A-201ENST00000354363 PRR36Q9H6K5 1346 aa21.16■□□□□ 0.98
PRPF40A-201ENST00000354363 RALGAPBQ86X10 1494 aa21.15■□□□□ 0.98
PRPF40A-201ENST00000354363 LMOD2Q6P5Q4 547 aa21.15■□□□□ 0.98
PRPF40A-201ENST00000354363 ALS2Q96Q42 1657 aa21.15■□□□□ 0.98
PRPF40A-201ENST00000354363 EP400Q96L91 3159 aa21.15■□□□□ 0.98
PRPF40A-201ENST00000354363 PLEKHG5O94827 1062 aa21.15■□□□□ 0.98
PRPF40A-201ENST00000354363 EIF3AQ14152 1382 aaKnown RBP21.14■□□□□ 0.98
PRPF40A-201ENST00000354363 WASLO00401 505 aaPredicted RBP21.13■□□□□ 0.97
PRPF40A-201ENST00000354363 ITSN1Q15811 1721 aa21.12■□□□□ 0.97
PRPF40A-201ENST00000354363 KIAA1210Q9ULL0 1709 aa21.11■□□□□ 0.97
PRPF40A-201ENST00000354363 GPRASP1Q5JY77 1395 aa21.1■□□□□ 0.97
PRPF40A-201ENST00000354363 NRAPQ86VF7 1730 aa21.09■□□□□ 0.97
PRPF40A-201ENST00000354363 CRYBG1Q9Y4K1 1723 aa21.09■□□□□ 0.97
PRPF40A-201ENST00000354363 VPS72Q15906 364 aa21.08■□□□□ 0.97
PRPF40A-201ENST00000354363 FAM83GA6ND36 823 aa21.07■□□□□ 0.96
PRPF40A-201ENST00000354363 ATP7BP35670 1465 aa21.07■□□□□ 0.96
PRPF40A-201ENST00000354363 CCDC125Q86Z20 511 aa21.06■□□□□ 0.96
PRPF40A-201ENST00000354363 NGDNQ8NEJ9 315 aaKnown RBP21.05■□□□□ 0.96
PRPF40A-201ENST00000354363 COL14A1Q05707 1796 aaKnown RBP21.05■□□□□ 0.96
PRPF40A-201ENST00000354363 SEPT12Q8IYM1 358 aa21.04■□□□□ 0.96
PRPF40A-201ENST00000354363 NUDT16Q96DE0 195 aaKnown RBP21.04■□□□□ 0.96
PRPF40A-201ENST00000354363 TOPAZ1Q8N9V7 1692 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms