RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ABCC11Q96J66 1382 aa18.13■□□□□ 0.49
HMGB1-202ENST00000339872 CEP170BQ9Y4F5 1589 aaPredicted RBP18.13■□□□□ 0.49
HMGB1-202ENST00000339872 TXNDC2Q86VQ3 553 aa18.13■□□□□ 0.49
HMGB1-202ENST00000339872 SLC12A5Q9H2X9 1139 aa18.13■□□□□ 0.49
HMGB1-202ENST00000339872 CABP2Q9NPB3 220 aa18.13■□□□□ 0.49
HMGB1-202ENST00000339872 CARD14Q9BXL6 1004 aa18.12■□□□□ 0.49
HMGB1-202ENST00000339872 EID1Q9Y6B2 187 aa18.12■□□□□ 0.49
HMGB1-202ENST00000339872 NPC1L1Q9UHC9 1359 aa18.12■□□□□ 0.49
HMGB1-202ENST00000339872 ADAMTS13Q76LX8 1427 aa18.12■□□□□ 0.49
HMGB1-202ENST00000339872 SRPK2P78362 688 aaKnown RBP18.12■□□□□ 0.49
HMGB1-202ENST00000339872 PNISRQ8TF01 805 aaKnown RBP18.12■□□□□ 0.49
HMGB1-202ENST00000339872 PLEKHH1Q9ULM0 1364 aa18.11■□□□□ 0.49
HMGB1-202ENST00000339872 WAPLQ7Z5K2 1190 aa18.1■□□□□ 0.49
HMGB1-202ENST00000339872 THEMISQ8N1K5 641 aaPredicted RBP18.1■□□□□ 0.49
HMGB1-202ENST00000339872 CPS1P31327 1500 aa18.1■□□□□ 0.49
HMGB1-202ENST00000339872 NSD3Q9BZ95 1437 aa18.1■□□□□ 0.49
HMGB1-202ENST00000339872 TECPR2O15040 1411 aa18.09■□□□□ 0.49
HMGB1-202ENST00000339872 USP32Q8NFA0 1604 aa18.08■□□□□ 0.48
HMGB1-202ENST00000339872 ZNF142P52746 1687 aaPredicted RBP18.08■□□□□ 0.48
HMGB1-202ENST00000339872 ATAD2Q6PL18 1390 aa18.08■□□□□ 0.48
HMGB1-202ENST00000339872 ANKRD36BQ8N2N9 1353 aa18.07■□□□□ 0.48
HMGB1-202ENST00000339872 NINLQ9Y2I6 1382 aa18.07■□□□□ 0.48
HMGB1-202ENST00000339872 FAM135BQ49AJ0 1406 aa18.06■□□□□ 0.48
HMGB1-202ENST00000339872 MED14O60244 1454 aa18.06■□□□□ 0.48
HMGB1-202ENST00000339872 PPP2R1AP30153 589 aa18.06■□□□□ 0.48
HMGB1-202ENST00000339872 CDK19Q9BWU1 502 aa18.06■□□□□ 0.48
HMGB1-202ENST00000339872 SLC26A8Q96RN1 970 aa18.05■□□□□ 0.48
HMGB1-202ENST00000339872 ZBED9Q6R2W3 1325 aa18.05■□□□□ 0.48
HMGB1-202ENST00000339872 DIP2AQ14689 1571 aa18.04■□□□□ 0.48
HMGB1-202ENST00000339872 A0A1W2PP64 1363 aa18.03■□□□□ 0.48
HMGB1-202ENST00000339872 SIRT1Q96EB6 747 aa18.02■□□□□ 0.48
HMGB1-202ENST00000339872 ROBO2Q9HCK4 1378 aa18.02■□□□□ 0.47
HMGB1-202ENST00000339872 SETD1BQ9UPS6 1966 aaKnown RBP18.01■□□□□ 0.47
HMGB1-202ENST00000339872 CGNL1Q0VF96 1302 aa18.01■□□□□ 0.47
HMGB1-202ENST00000339872 PTPRUQ92729 1446 aa18■□□□□ 0.47
HMGB1-202ENST00000339872 CD163L1Q9NR16 1453 aa17.99■□□□□ 0.47
HMGB1-202ENST00000339872 TERF2IPQ9NYB0 399 aa17.99■□□□□ 0.47
HMGB1-202ENST00000339872 TBX22Q9Y458 520 aa17.99■□□□□ 0.47
HMGB1-202ENST00000339872 WASLO00401 505 aaPredicted RBP17.98■□□□□ 0.47
HMGB1-202ENST00000339872 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.98■□□□□ 0.47
HMGB1-202ENST00000339872 MORC1Q86VD1 984 aa17.98■□□□□ 0.47
HMGB1-202ENST00000339872 ADGRB2O60241 1585 aa17.97■□□□□ 0.47
HMGB1-202ENST00000339872 NSD2O96028 1365 aa17.97■□□□□ 0.47
HMGB1-202ENST00000339872 SENP3-EIF4A1A0A087X0R7 540 aa17.97■□□□□ 0.47
HMGB1-202ENST00000339872 CABP1Q9NZU7 370 aa17.97■□□□□ 0.47
HMGB1-202ENST00000339872 HDGFL2Q7Z4V5 671 aaPredicted RBP17.95■□□□□ 0.46
HMGB1-202ENST00000339872 AMOTL2Q9Y2J4 779 aa17.95■□□□□ 0.46
HMGB1-202ENST00000339872 XRN1Q8IZH2 1706 aaKnown RBP17.95■□□□□ 0.46
HMGB1-202ENST00000339872 ATP7BP35670 1465 aa17.95■□□□□ 0.46
HMGB1-202ENST00000339872 ANKRD26Q9UPS8 1709 aa17.95■□□□□ 0.46
HMGB1-202ENST00000339872 BLMP54132 1417 aaPredicted RBP17.94■□□□□ 0.46
HMGB1-202ENST00000339872 PTCH1Q13635 1447 aa17.94■□□□□ 0.46
HMGB1-202ENST00000339872 ANKLE2Q86XL3 938 aa17.94■□□□□ 0.46
HMGB1-202ENST00000339872 KIF20BQ96Q89 1820 aa17.94■□□□□ 0.46
HMGB1-202ENST00000339872 PPIP5K1Q6PFW1 1433 aa17.93■□□□□ 0.46
HMGB1-202ENST00000339872 TNNT2P45379 298 aaPredicted RBP17.93■□□□□ 0.46
HMGB1-202ENST00000339872 WDR43Q15061 677 aaKnown RBP eCLIP17.93■□□□□ 0.46
HMGB1-202ENST00000339872 INSRP06213 1382 aa17.92■□□□□ 0.46
HMGB1-202ENST00000339872 NUDT16Q96DE0 195 aaKnown RBP17.91■□□□□ 0.46
HMGB1-202ENST00000339872 ITSN1Q15811 1721 aa17.91■□□□□ 0.46
HMGB1-202ENST00000339872 ADAMTS8Q9UP79 889 aa17.9■□□□□ 0.46
HMGB1-202ENST00000339872 CDC42BPGQ6DT37 1551 aa17.9■□□□□ 0.46
HMGB1-202ENST00000339872 PIK3R4Q99570 1358 aa17.89■□□□□ 0.46
HMGB1-202ENST00000339872 TOPAZ1Q8N9V7 1692 aa17.89■□□□□ 0.45
HMGB1-202ENST00000339872 AKAP12Q02952 1782 aa17.88■□□□□ 0.45
HMGB1-202ENST00000339872 NCKAP5LQ9HCH0 1330 aa17.88■□□□□ 0.45
HMGB1-202ENST00000339872 GGNBP2Q9H3C7 697 aa17.88■□□□□ 0.45
HMGB1-202ENST00000339872 CHD2O14647 1828 aaKnown RBP17.88■□□□□ 0.45
HMGB1-202ENST00000339872 MON2Q7Z3U7 1717 aa17.88■□□□□ 0.45
HMGB1-202ENST00000339872 POLR3AO14802 1390 aaPredicted RBP17.88■□□□□ 0.45
HMGB1-202ENST00000339872 PRR36Q9H6K5 1346 aa17.88■□□□□ 0.45
HMGB1-202ENST00000339872 CCDC61Q9Y6R9 512 aa17.88■□□□□ 0.45
HMGB1-202ENST00000339872 CPSF1Q10570 1443 aaKnown RBP17.87■□□□□ 0.45
HMGB1-202ENST00000339872 FYB1O15117 783 aa17.87■□□□□ 0.45
HMGB1-202ENST00000339872 SHPRHQ149N8 1683 aa17.87■□□□□ 0.45
HMGB1-202ENST00000339872 SALL2Q9Y467 1007 aaPredicted RBP17.87■□□□□ 0.45
HMGB1-202ENST00000339872 KCNA6P17658 529 aa17.86■□□□□ 0.45
HMGB1-202ENST00000339872 EDC4Q6P2E9 1401 aaKnown RBP17.85■□□□□ 0.45
HMGB1-202ENST00000339872 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.85■□□□□ 0.45
HMGB1-202ENST00000339872 NPHP4O75161 1426 aaPredicted RBP17.85■□□□□ 0.45
HMGB1-202ENST00000339872 SMG6Q86US8 1419 aaKnown RBP17.85■□□□□ 0.45
HMGB1-202ENST00000339872 MTHFSP49914 203 aa17.84■□□□□ 0.45
HMGB1-202ENST00000339872 NUTM2FA1L443 756 aa17.84■□□□□ 0.45
HMGB1-202ENST00000339872 NEFLP07196 543 aa17.84■□□□□ 0.45
HMGB1-202ENST00000339872 SUPT16HQ9Y5B9 1047 aaKnown RBP17.83■□□□□ 0.45
HMGB1-202ENST00000339872 CFAP53Q96M91 514 aa17.82■□□□□ 0.44
HMGB1-202ENST00000339872 NUDCQ9Y266 331 aa17.82■□□□□ 0.44
HMGB1-202ENST00000339872 RGPD8O14715 1765 aaPredicted RBP17.82■□□□□ 0.44
HMGB1-202ENST00000339872 NKTRP30414 1462 aaKnown RBP17.81■□□□□ 0.44
HMGB1-202ENST00000339872 FKBP8Q14318 412 aa17.81■□□□□ 0.44
HMGB1-202ENST00000339872 NALCNQ8IZF0 1738 aa17.8■□□□□ 0.44
HMGB1-202ENST00000339872 NRKQ7Z2Y5 1582 aa17.8■□□□□ 0.44
HMGB1-202ENST00000339872 CCDC146Q8IYE0 955 aa17.79■□□□□ 0.44
HMGB1-202ENST00000339872 FMN2Q9NZ56 1722 aa17.79■□□□□ 0.44
HMGB1-202ENST00000339872 ZNF692Q9BU19 519 aaPredicted RBP17.78■□□□□ 0.44
HMGB1-202ENST00000339872 ACEP12821 1306 aa17.78■□□□□ 0.44
HMGB1-202ENST00000339872 NME9Q86XW9 330 aa17.77■□□□□ 0.44
HMGB1-202ENST00000339872 PLEKHG3A1L390 1219 aa17.77■□□□□ 0.43
HMGB1-202ENST00000339872 PDE3BQ13370 1112 aa17.76■□□□□ 0.43
HMGB1-202ENST00000339872 MAP2P11137 1827 aaKnown RBP17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms