RNA–Protein interactions for RNA: ENST00000339570.9

SCARB1-202, Transcript of scavenger receptor class B member 1, humanhuman

TSL 5 BASIC

Gene SCARB1, Length 3,329 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB1-202ENST00000339570 LNPKQ9C0E8 428 aa20.47■□□□□ 0.87
SCARB1-202ENST00000339570 UNC13BO14795 1591 aa20.46■□□□□ 0.87
SCARB1-202ENST00000339570 ZKSCAN2Q63HK3 967 aa20.45■□□□□ 0.86
SCARB1-202ENST00000339570 IQGAP3Q86VI3 1631 aa20.45■□□□□ 0.86
SCARB1-202ENST00000339570 NAP1L5Q96NT1 182 aaPredicted RBP20.45■□□□□ 0.86
SCARB1-202ENST00000339570 C1orf115Q9H7X2 142 aa20.45■□□□□ 0.86
SCARB1-202ENST00000339570 SRPK2P78362 688 aaKnown RBP20.44■□□□□ 0.86
SCARB1-202ENST00000339570 ERVK-7P63135 1459 aa20.43■□□□□ 0.86
SCARB1-202ENST00000339570 HSP90AA1P07900 732 aaKnown RBP20.43■□□□□ 0.86
SCARB1-202ENST00000339570 MVPQ14764 893 aaKnown RBP20.43■□□□□ 0.86
SCARB1-202ENST00000339570 GOLGA6L3A6NEY3 463 aa20.43■□□□□ 0.86
SCARB1-202ENST00000339570 MYH16Q9H6N6 1097 aa20.43■□□□□ 0.86
SCARB1-202ENST00000339570 MADDQ8WXG6 1647 aa20.43■□□□□ 0.86
SCARB1-202ENST00000339570 SSH1Q8WYL5 1049 aa20.42■□□□□ 0.86
SCARB1-202ENST00000339570 NOB1Q9ULX3 412 aaKnown RBP20.42■□□□□ 0.86
SCARB1-202ENST00000339570 TRIM27P14373 513 aa20.41■□□□□ 0.86
SCARB1-202ENST00000339570 ANTXR1Q9H6X2 564 aa20.41■□□□□ 0.86
SCARB1-202ENST00000339570 PLCH2O75038 1416 aa20.41■□□□□ 0.86
SCARB1-202ENST00000339570 NOS1P29475 1434 aa20.41■□□□□ 0.86
SCARB1-202ENST00000339570 XRCC6P12956 609 aaKnown RBP eCLIP20.4■□□□□ 0.86
SCARB1-202ENST00000339570 FAM43AQ8N2R8 423 aa20.4■□□□□ 0.86
SCARB1-202ENST00000339570 MCM4P33991 863 aa20.4■□□□□ 0.86
SCARB1-202ENST00000339570 SYNMO15061 1565 aa20.39■□□□□ 0.86
SCARB1-202ENST00000339570 CLTCL1P53675 1640 aa20.39■□□□□ 0.85
SCARB1-202ENST00000339570 TMEM57Q8N5G2 664 aa20.39■□□□□ 0.85
SCARB1-202ENST00000339570 HSCBQ8IWL3 235 aa20.38■□□□□ 0.85
SCARB1-202ENST00000339570 THUMPD2Q9BTF0 503 aaKnown RBP20.38■□□□□ 0.85
SCARB1-202ENST00000339570 TRAK2O60296 914 aa20.38■□□□□ 0.85
SCARB1-202ENST00000339570 MINK1Q8N4C8 1332 aaPredicted RBP20.37■□□□□ 0.85
SCARB1-202ENST00000339570 RIPK4P57078 832 aa20.36■□□□□ 0.85
SCARB1-202ENST00000339570 L1TD1Q5T7N2 865 aaKnown RBP20.36■□□□□ 0.85
SCARB1-202ENST00000339570 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.35■□□□□ 0.852e-8■□□□□ 8.6
SCARB1-202ENST00000339570 ABCC2Q92887 1545 aa20.35■□□□□ 0.85
SCARB1-202ENST00000339570 LAMC1P11047 1609 aa20.35■□□□□ 0.85
SCARB1-202ENST00000339570 HSP90AB1P08238 724 aaKnown RBP20.35■□□□□ 0.85
SCARB1-202ENST00000339570 POLR3AO14802 1390 aaPredicted RBP20.35■□□□□ 0.85
SCARB1-202ENST00000339570 APBB1O00213 710 aa20.35■□□□□ 0.85
SCARB1-202ENST00000339570 WDR63Q8IWG1 891 aa20.35■□□□□ 0.85
SCARB1-202ENST00000339570 KDM5AP29375 1690 aaKnown RBP20.34■□□□□ 0.85
SCARB1-202ENST00000339570 RNF17Q9BXT8 1623 aaKnown RBP20.34■□□□□ 0.85
SCARB1-202ENST00000339570 IQGAP1P46940 1657 aa20.33■□□□□ 0.85
SCARB1-202ENST00000339570 ANKRD45Q5TZF3 282 aa20.33■□□□□ 0.85
SCARB1-202ENST00000339570 HMOX1P09601 288 aa20.33■□□□□ 0.84
SCARB1-202ENST00000339570 RBM42Q9BTD8 480 aaKnown RBP20.32■□□□□ 0.84
SCARB1-202ENST00000339570 MYOM1P52179 1685 aa20.32■□□□□ 0.84
SCARB1-202ENST00000339570 NPC1L1Q9UHC9 1359 aa20.32■□□□□ 0.84
SCARB1-202ENST00000339570 CHMP5Q9NZZ3 219 aa20.32■□□□□ 0.84
SCARB1-202ENST00000339570 TMPOP42166 694 aaKnown RBP20.31■□□□□ 0.84
SCARB1-202ENST00000339570 PTPRTO14522 1441 aa20.31■□□□□ 0.84
SCARB1-202ENST00000339570 ATF7IPQ6VMQ6 1270 aa20.3■□□□□ 0.84
SCARB1-202ENST00000339570 NLRP1Q9C000 1473 aa20.3■□□□□ 0.84
SCARB1-202ENST00000339570 PLXNC1O60486 1568 aa20.3■□□□□ 0.84
SCARB1-202ENST00000339570 RSPH6AQ9H0K4 717 aa20.3■□□□□ 0.84
SCARB1-202ENST00000339570 PNNQ9H307 717 aaKnown RBP20.29■□□□□ 0.84
SCARB1-202ENST00000339570 TRPM2O94759 1503 aa20.28■□□□□ 0.84
SCARB1-202ENST00000339570 DDX19BQ9UMR2 479 aa20.28■□□□□ 0.84
SCARB1-202ENST00000339570 NGEFQ8N5V2 710 aa20.27■□□□□ 0.84
SCARB1-202ENST00000339570 NCLP19338 710 aaKnown RBP20.27■□□□□ 0.84
SCARB1-202ENST00000339570 TRIM35Q9UPQ4 493 aa20.26■□□□□ 0.83
SCARB1-202ENST00000339570 CLASP1Q7Z460 1538 aa20.26■□□□□ 0.83
SCARB1-202ENST00000339570 EVC2Q86UK5 1308 aa20.26■□□□□ 0.83
SCARB1-202ENST00000339570 NINLQ9Y2I6 1382 aa20.26■□□□□ 0.83
SCARB1-202ENST00000339570 STAC3Q96MF2 364 aa20.25■□□□□ 0.83
SCARB1-202ENST00000339570 SLC24A1O60721 1099 aa20.25■□□□□ 0.83
SCARB1-202ENST00000339570 CD2BP2O95400 341 aaKnown RBP20.24■□□□□ 0.83
SCARB1-202ENST00000339570 CEP152O94986 1710 aa20.24■□□□□ 0.83
SCARB1-202ENST00000339570 ABCC1P33527 1531 aa20.24■□□□□ 0.83
SCARB1-202ENST00000339570 C14orf93Q9H972 538 aaKnown RBP20.24■□□□□ 0.83
SCARB1-202ENST00000339570 SPHKAPQ2M3C7 1700 aa20.23■□□□□ 0.83
SCARB1-202ENST00000339570 FANCAO15360 1455 aa20.23■□□□□ 0.83
SCARB1-202ENST00000339570 TPRNQ4KMQ1 711 aa20.23■□□□□ 0.83
SCARB1-202ENST00000339570 CHD1O14646 1710 aa20.23■□□□□ 0.83
SCARB1-202ENST00000339570 ABCA6Q8N139 1617 aa20.22■□□□□ 0.83
SCARB1-202ENST00000339570 TNPO1Q92973 898 aaKnown RBP20.22■□□□□ 0.83
SCARB1-202ENST00000339570 FOXD4L5Q5VV16 416 aaPredicted RBP20.22■□□□□ 0.83
SCARB1-202ENST00000339570 FOXD4L4Q8WXT5 416 aaPredicted RBP20.22■□□□□ 0.83
SCARB1-202ENST00000339570 PRKAR2BP31323 418 aa20.21■□□□□ 0.83
SCARB1-202ENST00000339570 ZBTB7CA1YPR0 619 aa20.21■□□□□ 0.83
SCARB1-202ENST00000339570 TRIM44Q96DX7 344 aaPredicted RBP20.21■□□□□ 0.83
SCARB1-202ENST00000339570 PHF23Q9BUL5 403 aaPredicted RBP20.2■□□□□ 0.82
SCARB1-202ENST00000339570 GRPEL1Q9HAV7 217 aa20.2■□□□□ 0.82
SCARB1-202ENST00000339570 ATAD2Q6PL18 1390 aa20.2■□□□□ 0.82
SCARB1-202ENST00000339570 ADGRL1O94910 1474 aa20.2■□□□□ 0.82
SCARB1-202ENST00000339570 TSPYL6Q8N831 410 aa20.2■□□□□ 0.82
SCARB1-202ENST00000339570 RAPGEF3O95398 923 aa20.2■□□□□ 0.82
SCARB1-202ENST00000339570 CHD1LQ86WJ1 897 aa20.2■□□□□ 0.82
SCARB1-202ENST00000339570 DIAPH1O60610 1272 aaKnown RBP20.19■□□□□ 0.82
SCARB1-202ENST00000339570 PRAM1Q96QH2 718 aa20.19■□□□□ 0.82
SCARB1-202ENST00000339570 GAS2L3Q86XJ1 694 aa20.19■□□□□ 0.82
SCARB1-202ENST00000339570 ZFYVE16Q7Z3T8 1539 aa20.18■□□□□ 0.82
SCARB1-202ENST00000339570 SOX12O15370 315 aa20.18■□□□□ 0.82
SCARB1-202ENST00000339570 DCTN1Q14203 1278 aa20.18■□□□□ 0.82
SCARB1-202ENST00000339570 ZBTB40Q9NUA8 1239 aa20.17■□□□□ 0.82
SCARB1-202ENST00000339570 FYB1O15117 783 aa20.17■□□□□ 0.82
SCARB1-202ENST00000339570 CABP1Q9NZU7 370 aa20.17■□□□□ 0.82
SCARB1-202ENST00000339570 ZNF518AQ6AHZ1 1483 aa20.17■□□□□ 0.82
SCARB1-202ENST00000339570 IPO8O15397 1037 aaKnown RBP20.17■□□□□ 0.82
SCARB1-202ENST00000339570 SSFA2P28290 1259 aa20.17■□□□□ 0.82
SCARB1-202ENST00000339570 STAG3Q9UJ98 1225 aa20.16■□□□□ 0.82
SCARB1-202ENST00000339570 ZCCHC11Q5TAX3 1644 aaKnown RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms