RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 DDX58O95786 925 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-202ENST00000336838 PSMA5P28066 241 aa12.48□□□□□ -0.41
CCDC88A-202ENST00000336838 NCOA1Q15788 1441 aa12.48□□□□□ -0.41
CCDC88A-202ENST00000336838 A0A0G2JS52 829 aa12.48□□□□□ -0.41
CCDC88A-202ENST00000336838 NOM1Q5C9Z4 860 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-202ENST00000336838 NKTRP30414 1462 aaKnown RBP12.48□□□□□ -0.41
CCDC88A-202ENST00000336838 IPO7O95373 1038 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-202ENST00000336838 PNISRQ8TF01 805 aaKnown RBP12.47□□□□□ -0.41
CCDC88A-202ENST00000336838 SLC4A10Q6U841 1118 aa12.46□□□□□ -0.41
CCDC88A-202ENST00000336838 MAGI1Q96QZ7 1491 aaPredicted RBP12.46□□□□□ -0.42
CCDC88A-202ENST00000336838 ANO8Q9HCE9 1232 aaPredicted RBP12.46□□□□□ -0.42
CCDC88A-202ENST00000336838 PLIN1O60240 522 aa12.45□□□□□ -0.42
CCDC88A-202ENST00000336838 BICRAQ9NZM4 1560 aa12.45□□□□□ -0.42
CCDC88A-202ENST00000336838 A0A0U1RQG5 324 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-202ENST00000336838 RIPK4P57078 832 aa12.45□□□□□ -0.42
CCDC88A-202ENST00000336838 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.45□□□□□ -0.42
CCDC88A-202ENST00000336838 RPGRIP1LQ68CZ1 1315 aa12.45□□□□□ -0.42
CCDC88A-202ENST00000336838 TAF7LQ5H9L4 462 aa12.45□□□□□ -0.42
CCDC88A-202ENST00000336838 PLEKHH1Q9ULM0 1364 aa12.45□□□□□ -0.42
CCDC88A-202ENST00000336838 ARHGEF12Q9NZN5 1544 aa12.45□□□□□ -0.42
CCDC88A-202ENST00000336838 NGDNQ8NEJ9 315 aaKnown RBP12.44□□□□□ -0.42
CCDC88A-202ENST00000336838 CWC15Q9P013 229 aaKnown RBP12.44□□□□□ -0.42
CCDC88A-202ENST00000336838 RAPGEF6Q8TEU7 1601 aa12.44□□□□□ -0.42
CCDC88A-202ENST00000336838 ABCC11Q96J66 1382 aa12.44□□□□□ -0.42
CCDC88A-202ENST00000336838 TRAK1Q9UPV9 953 aa12.44□□□□□ -0.42
CCDC88A-202ENST00000336838 SNAPC4Q5SXM2 1469 aa12.44□□□□□ -0.42
CCDC88A-202ENST00000336838 C1orf141Q5JVX7 400 aa12.44□□□□□ -0.42
CCDC88A-202ENST00000336838 SRCIN1Q9C0H9 1055 aa12.43□□□□□ -0.42
CCDC88A-202ENST00000336838 SYNE3Q6ZMZ3 975 aa12.43□□□□□ -0.42
CCDC88A-202ENST00000336838 CCDC66A2RUB6 948 aa12.43□□□□□ -0.42
CCDC88A-202ENST00000336838 GNAI3P08754 354 aa12.43□□□□□ -0.42
CCDC88A-202ENST00000336838 TAF3Q5VWG9 929 aa12.43□□□□□ -0.42
CCDC88A-202ENST00000336838 SASS6Q6UVJ0 657 aa12.43□□□□□ -0.42
CCDC88A-202ENST00000336838 NSD2O96028 1365 aa12.43□□□□□ -0.42
CCDC88A-202ENST00000336838 RRP9O43818 475 aaKnown RBP12.43□□□□□ -0.42
CCDC88A-202ENST00000336838 TRIM29Q14134 588 aa12.43□□□□□ -0.42
CCDC88A-202ENST00000336838 SMC3Q9UQE7 1217 aa12.43□□□□□ -0.42
CCDC88A-202ENST00000336838 RILPL2Q969X0 211 aa12.42□□□□□ -0.42
CCDC88A-202ENST00000336838 AKAP17AQ02040 695 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-202ENST00000336838 TRAK2O60296 914 aa12.42□□□□□ -0.42
CCDC88A-202ENST00000336838 CCDC73Q6ZRK6 1079 aa12.42□□□□□ -0.42
CCDC88A-202ENST00000336838 ERC1Q8IUD2 1116 aa12.42□□□□□ -0.42
CCDC88A-202ENST00000336838 CCDC47Q96A33 483 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-202ENST00000336838 C9orf78Q9NZ63 289 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-202ENST00000336838 IFIT2P09913 472 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-202ENST00000336838 PPP2R1AP30153 589 aa12.42□□□□□ -0.42
CCDC88A-202ENST00000336838 TPD52L1Q16890 204 aaPredicted RBP12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 ATAD2Q6PL18 1390 aa12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 RALGAPBQ86X10 1494 aa12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 ANKRD1Q15327 319 aa12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 RRP7AQ9Y3A4 280 aaKnown RBP12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 PAK3O75914 559 aaPredicted RBP12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 RASSF8Q8NHQ8 419 aa12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 CNTROBQ8N137 903 aa12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 KAT6BQ8WYB5 2073 aa12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 UGGT2Q9NYU1 1516 aa12.41□□□□□ -0.42
CCDC88A-202ENST00000336838 TMX4Q9H1E5 349 aaPredicted RBP12.4□□□□□ -0.42
CCDC88A-202ENST00000336838 GPRASP1Q5JY77 1395 aa12.4□□□□□ -0.42
CCDC88A-202ENST00000336838 CDR1P51861 262 aa12.4□□□□□ -0.42
CCDC88A-202ENST00000336838 NUP160Q12769 1436 aa12.4□□□□□ -0.42
CCDC88A-202ENST00000336838 TEFQ10587 303 aa12.4□□□□□ -0.42
CCDC88A-202ENST00000336838 DHX16O60231 1041 aaKnown RBP12.4□□□□□ -0.42
CCDC88A-202ENST00000336838 ERCC4Q92889 916 aaPredicted RBP12.4□□□□□ -0.42
CCDC88A-202ENST00000336838 AEBP1Q8IUX7 1158 aa12.39□□□□□ -0.43
CCDC88A-202ENST00000336838 TRDNQ13061 729 aa12.39□□□□□ -0.43
CCDC88A-202ENST00000336838 ADAMTS8Q9UP79 889 aa12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 PIP4K2AP48426 406 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 ZNF771Q7L3S4 317 aaPredicted RBP12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 AK7Q96M32 723 aa12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 CPLX1O14810 134 aa12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 CCT4P50991 539 aaKnown RBP12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 CHMP3Q9Y3E7 222 aa12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 TSPY26PQ9H489 355 aa12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 G3BP1Q13283 466 aaKnown RBP eCLIP12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 ANO2Q9NQ90 1003 aa12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 AMOTL1Q8IY63 956 aa12.38□□□□□ -0.43
CCDC88A-202ENST00000336838 CSB-PGBD3P0DP91 1061 aa12.37□□□□□ -0.43
CCDC88A-202ENST00000336838 HSP90B2PQ58FF3 399 aa12.37□□□□□ -0.43
CCDC88A-202ENST00000336838 MCTP1Q6DN14 999 aa12.37□□□□□ -0.43
CCDC88A-202ENST00000336838 WDR33Q9C0J8 1336 aaKnown RBP12.37□□□□□ -0.43
CCDC88A-202ENST00000336838 SAFBQ15424 915 aaKnown RBP eCLIP12.37□□□□□ -0.43
CCDC88A-202ENST00000336838 CEP89Q96ST8 783 aa12.37□□□□□ -0.43
CCDC88A-202ENST00000336838 GAS2L2Q8NHY3 880 aa12.37□□□□□ -0.43
CCDC88A-202ENST00000336838 BICD2Q8TD16 824 aa12.37□□□□□ -0.43
CCDC88A-202ENST00000336838 TXLNBQ8N3L3 684 aa12.37□□□□□ -0.43
CCDC88A-202ENST00000336838 MVPQ14764 893 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-202ENST00000336838 MAPKBP1O60336 1514 aa12.36□□□□□ -0.43
CCDC88A-202ENST00000336838 KIF2AO00139 706 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-202ENST00000336838 SOX12O15370 315 aa12.36□□□□□ -0.43
CCDC88A-202ENST00000336838 BCL2L13Q9BXK5 485 aa12.36□□□□□ -0.43
CCDC88A-202ENST00000336838 PDCL2Q8N4E4 241 aa12.36□□□□□ -0.43
CCDC88A-202ENST00000336838 CDK13Q14004 1512 aaKnown RBP12.36□□□□□ -0.43
CCDC88A-202ENST00000336838 TTC5Q8N0Z6 440 aa12.36□□□□□ -0.43
CCDC88A-202ENST00000336838 SENP3Q9H4L4 574 aaPredicted RBP12.36□□□□□ -0.43
CCDC88A-202ENST00000336838 CCDC30Q5VVM6 783 aa12.36□□□□□ -0.43
CCDC88A-202ENST00000336838 FOXD4L1Q9NU39 408 aa12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 PBRM1Q86U86 1689 aa12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 DNMT1P26358 1616 aaKnown RBP12.35□□□□□ -0.43
CCDC88A-202ENST00000336838 JMYQ8N9B5 988 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms